SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000129071
Gene: MBD4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:129430947-129440179 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_004500459 chr3:129423675-129448710 Sample_02_0045 Embryo endodermal CyT49_ES_D7 459 8 660 104 2 83 785 C3ORF25,MBD4,IFT122,RPL32P3,SNORA7B
SE_02_030000240 chr3:129427549-129452081 Sample_02_0300 Neuroblastoma CLB-PE 240 1 645 91 1 113 857 C3ORF25,MBD4,IFT122,RPL32P3,SNORA7B
SE_02_082700926 chr3:129434070-129447750 Sample_02_0827 Stomach normal gastric 926 3 348 49 0 55 370 MBD4,IFT122,SNORA7B,RPL32P3,EFCAB12
SE_02_146800774 chr3:129435484-129498252 Sample_02_1468 Blood HUDEP-2_WT 774 10 1719 236 5 270 1750 MBD4,IFT122,SNORA7B,EFCAB12,H1FOO,RHO,RPL32P3
SE_02_103300645 chr3:129438083-129462853 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 645 4 632 90 0 68 487 MBD4,IFT122,SNORA7B,RPL32P3,EFCAB12
SE_04_000100550 chr3:129438352-129490911 Sample_04_0001 Blood heat shocked K562 550 6 1417 190 2 186 1455 MBD4,IFT122,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_111600653 chr3:129438586-129482043 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 653 9 1133 154 1 154 1123 MBD4,IFT122,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_131000828 chr3:129438691-129499114 Sample_02_1310 Bone marrow ASMSCs 828 10 1674 232 5 257 1613 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_01_009800994 chr3:129438989-129507241 Sample_01_0098 Heart left ventricle_51y 994 15 1924 250 5 330 1952 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_091300903 chr3:129439055-129505606 Sample_02_0913 Heart left ventricle_DCM_LV1304 903 16 1881 249 5 320 1883 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_081600422 chr3:129439063-129500455 Sample_02_0816 Ovary Clear cell ovarian cancer 422 26 1709 234 5 268 1703 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_01_010101478 chr3:129439135-129454305 Sample_01_0101 Pancreas pancreas_54y 1478 5 393 58 0 58 288 MBD4,IFT122,SNORA7B,RPL32P3,EFCAB12
SE_02_091201046 chr3:129439192-129505513 Sample_02_0912 Heart left ventricle_DCM_LV1300 1046 16 1872 248 5 315 1883 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_082100299 chr3:129439385-129462715 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 299 3 606 85 0 67 483 MBD4,IFT122,SNORA7B,RPL32P3,EFCAB12
SE_02_090800971 chr3:129440069-129507511 Sample_02_0908 Heart left ventricle_DCM_LV1262 971 18 1910 250 5 326 1844 MBD4,IFT122,H1FOO,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_075700135 chr3:129440157-129470011 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 135 5 786 104 0 95 618 MBD4,IFT122,SNORA7B,RPL32P3,EFCAB12
SE_02_075400103 chr3:129440245-129469265 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 103 3 772 102 0 90 574 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_109900499 chr3:129441834-129490930 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 499 20 1323 180 2 165 1243 IFT122,MBD4,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_098800741 chr3:129441839-129469309 Sample_02_0988 Blood K562_EPZ 741 10 716 97 0 76 509 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_075200650 chr3:129441849-129453991 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 650 2 307 51 0 35 76 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_075300344 chr3:129441876-129468434 Sample_02_0753 Embryo ES-derived progenitors_FG type 344 9 677 93 0 74 489 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_052500753 chr3:129441947-129461958 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 753 11 507 76 0 46 271 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_091500930 chr3:129441991-129502162 Sample_02_0915 Heart left ventricle_DCM_LV1371 930 16 1676 233 5 252 1491 IFT122,H1FOO,MBD4,SNORA7B,EFCAB12,RHO,RPL32P3
SE_02_148300871 chr3:129442010-129473878 Sample_02_1483 Bone RD-ES 871 9 813 114 0 79 533 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_049300988 chr3:129442599-129450573 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 988 5 193 28 0 17 44 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_047600759 chr3:129442719-129470006 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 759 12 705 91 0 77 533 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_082200354 chr3:129444017-129462753 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 354 4 482 67 0 44 271 IFT122,SNORA7B,RPL32P3,EFCAB12,MBD4
SE_02_103502084 chr3:129448777-129493093 Sample_02_1035 Mammary gland HCC70_Vehicle 2084 16 1224 157 4 166 1308 IFT122,MBD4,RHO,RPL32P3,EFCAB12
SE_02_047401337 chr3:129460467-129496111 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1337 6 998 134 5 158 1240 IFT122,H1FOO,RHO,EFCAB12,MBD4
SE_02_088901353 chr3:129460597-129514550 Sample_02_0889 Heart left ventricle_LV1183 1353 10 1562 183 5 281 1796 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_088800910 chr3:129460642-129505578 Sample_02_0888 Heart left ventricle_LV1160 910 12 1322 169 5 256 1510 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_00_005200987 chr3:129460760-129505666 Sample_00_0052 Heart left ventricle 3y 987 15 1323 169 5 256 1503 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089801276 chr3:129460778-129505628 Sample_02_0898 Heart left ventricle_LV1356 1276 9 1321 169 5 256 1502 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089601249 chr3:129460902-129514710 Sample_02_0896 Heart left ventricle_LV1294 1249 14 1558 182 5 281 1809 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089000816 chr3:129461002-129505642 Sample_02_0890 Heart left ventricle_LV1200 816 8 1316 168 5 256 1476 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089701070 chr3:129461049-129514703 Sample_02_0897 Heart left ventricle_LV1325 1070 14 1555 182 5 281 1786 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_090001000 chr3:129461126-129505304 Sample_02_0900 Heart left ventricle_LV1452 1000 16 1305 167 5 241 1462 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089201134 chr3:129461130-129507927 Sample_02_0892 Heart left ventricle_LV1215 1134 12 1371 170 5 266 1612 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089900846 chr3:129461162-129501057 Sample_02_0899 Heart left ventricle_LV1400 846 10 1157 154 5 204 1282 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_119900320 chr3:129461286-129497710 Sample_02_1199 Brain GBM35 320 9 1032 139 5 159 1183 IFT122,H1FOO,RHO,EFCAB12,MBD4
SE_02_090301345 chr3:129461324-129507640 Sample_02_0903 Heart left ventricle_DCM_LV1009 1345 13 1356 170 5 263 1550 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_02_089500696 chr3:129461335-129505420 Sample_02_0895 Heart left ventricle_LV1259 696 14 1300 168 5 239 1445 IFT122,H1FOO,MBD4,EFCAB12,RHO
SE_00_005300330 chr3:129481761-129496413 Sample_00_0053 Embryo trophoblast cell originated from H1 330 5 449 67 4 68 522 IFT122,H1FOO,RHO,MBD4
SE_02_122301186 chr3:129484644-129505598 Sample_02_1223 Bone marrow KMS28BM 1186 4 678 87 4 159 655 IFT122,H1FOO,RHO,MBD4
Genomic distribution of SEs associated with MBD4
Genome Browser

The strength of the tissue affected by the gene

Expression of MBD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)