SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000163827
Gene: LRRC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:46515385-46580099 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_007600558 chr3:46532750-46569112 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 558 1 946 148 16 37 547 LRRC2,RTP3,TDGF1,LOC100132146
SE_02_022600252 chr3:46535464-46562537 Sample_02_0226 Blood KOPTK1 252 3 741 121 14 8 371 LRRC2,RTP3,TDGF1,LOC100132146
SE_01_002500169 chr3:46535671-46558979 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 169 3 668 109 8 8 304 LRRC2,RTP3,TDGF1
SE_02_034800466 chr3:46535674-46559195 Sample_02_0348 Peripheral blood CUTLL1_wild-type 466 4 669 110 9 8 317 LRRC2,RTP3,TDGF1
SE_02_011001040 chr3:46536069-46560603 Sample_02_0110 Ovaries IOE11 1040 3 686 110 10 8 371 LRRC2,RTP3,TDGF1
SE_02_022100260 chr3:46536290-46553746 Sample_02_0221 Blood CCRF-CEM 260 3 496 80 5 8 193 LRRC2,RTP3,TDGF1
SE_02_027400540 chr3:46536644-46561192 Sample_02_0274 Endometriosis hTERT_KD 540 5 692 112 11 8 371 LRRC2,RTP3,TDGF1
SE_02_011100896 chr3:46536751-46560292 Sample_02_0111 Ovaries IOE4 896 3 660 108 10 8 371 LRRC2,RTP3,TDGF1
SE_00_002400025 chr3:46549315-46586661 Sample_00_0024 Embryo mesendoderm 25 7 990 158 14 46 873 LRRC2,TDGF1,LOC100132146
SE_02_036800506 chr3:46556177-46567792 Sample_02_0368 Skeletal muscle NS134 506 2 278 45 11 28 323 LRRC2,TDGF1,LOC100132146
SE_02_036700514 chr3:46557229-46567767 Sample_02_0367 Skeletal muscle NS129 514 1 237 37 11 28 319 LRRC2,TDGF1,LOC100132146
SE_02_088901169 chr3:46557370-46567246 Sample_02_0889 Heart left ventricle_LV1183 1169 1 222 36 11 28 291 LRRC2,LRRC2-AS1,TDGF1,LOC100132146
SE_02_089300721 chr3:46557915-46567121 Sample_02_0893 Heart left ventricle_LV1226 721 1 194 28 11 28 213 LRRC2,LRRC2-AS1,TDGF1,LOC100132146
SE_02_090401446 chr3:46558077-46567079 Sample_02_0904 Heart left ventricle_DCM_LV1028 1446 1 188 26 11 28 213 LRRC2,LRRC2-AS1,TDGF1,LOC100132146
SE_00_004600933 chr3:46559324-46566934 Sample_00_0046 Heart right ventricle_34y 933 7 155 22 7 28 191 LRRC2,LRRC2-AS1,TDGF1,LOC100132146
Genomic distribution of SEs associated with LRRC2
Genome Browser

The strength of the tissue affected by the gene

Expression of LRRC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)