Gene overview

Strategies/Algorithm: closest_active Ensembl ID:
Gene: LINC01599 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_048300508 chr14:49998881-50003763 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 508 3 133 6 0 17 255 LINC01588,MIR6076,LINC01599
SE_02_059300645 chr14:49999383-50004113 Sample_02_0593 Fetal spleenocytes fetal naive T cells 645 2 130 5 0 14 255 LINC01588,MIR6076,C14orf182,C14orf183,ARF6,SOS2,LINC01599
SE_02_065700441 chr14:49999709-50014184 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 441 5 409 58 1 34 698 LINC01588,LINC01599,MIR6076
SE_02_134500121 chr14:50031678-50101055 Sample_02_1345 Leukophereses leukophereses_p358 121 20 2003 192 10 73 986 LINC01599,LINC01588,VCPKMT
SE_02_078300064 chr14:50037222-50096605 Sample_02_0783 Blood MEC2 64 12 1737 168 8 64 986 LINC01599,LINC01588,VCPKMT
SE_02_078400049 chr14:50037353-50096459 Sample_02_0784 Blood OSU-CLL 49 11 1730 166 8 64 986 LINC01599,LINC01588,VCPKMT
SE_02_078200095 chr14:50037380-50096720 Sample_02_0782 Blood MEC1 95 12 1736 168 8 64 986 LINC01599,LINC01588,VCPKMT
SE_02_081600484 chr14:50037709-50086328 Sample_02_0816 Ovary Clear cell ovarian cancer 484 12 1450 144 8 59 702 LINC01599,LINC01588,VCPKMT
SE_02_117401055 chr14:50037851-50068367 Sample_02_1174 Brain GBM02 1055 13 938 73 8 54 465 LINC01599,LINC01588,VCPKMT
SE_02_145800241 chr14:50038178-50085966 Sample_02_1458 Pancreas THP1+PANC1_shNC 241 12 1428 143 8 59 619 LINC01599,LINC01588,VCPKMT
SE_02_132100604 chr14:50059518-50068418 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 604 3 226 15 0 25 0 LINC01599,VCPKMT
SE_02_153700291 chr14:50059571-50068440 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 291 2 227 15 0 25 0 LINC01599,VCPKMT
SE_02_132000604 chr14:50059591-50068418 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 604 4 226 15 0 25 0 LINC01599,VCPKMT
SE_02_087600373 chr14:50059610-50063316 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 373 1 91 8 0 21 0 LINC01599
SE_02_072700996 chr14:50059648-50063273 Sample_02_0727 Fetal lung IMR90_Etoposide 996 1 89 8 0 21 0 LINC01599
SE_02_079900404 chr14:50059658-50063279 Sample_02_0799 Brain MESMN1 404 1 89 8 0 21 0 LINC01599
SE_02_066000787 chr14:50059757-50084148 Sample_02_0660 Mammary gland MCF10DCIS 787 5 665 80 0 30 132 LINC01599,VCPKMT
SE_02_122801003 chr14:50059808-50068445 Sample_02_1228 Mammary gland MDA-MB-231_2 1003 4 221 14 0 25 0 LINC01599,VCPKMT
SE_02_153600273 chr14:50059878-50067830 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 273 2 204 14 0 25 0 LINC01599,VCPKMT
SE_02_050700443 chr14:50059894-50063198 Sample_02_0507 Esophagus TE7_1 443 3 83 7 0 21 0 LINC01599
SE_02_044800934 chr14:50059904-50068483 Sample_02_0448 Bone MNNG 934 3 221 14 0 25 0 LINC01599,VCPKMT
SE_02_135400910 chr14:50059974-50063466 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 910 1 83 7 0 21 0 LINC01599
SE_02_135200964 chr14:50060017-50063469 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 964 1 82 7 0 21 0 LINC01599
SE_02_153400484 chr14:50060063-50068400 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 484 2 214 14 0 25 0 LINC01599,VCPKMT
SE_02_153500366 chr14:50060127-50068452 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 366 4 216 14 0 25 0 LINC01599,VCPKMT
SE_02_135301114 chr14:50060284-50063290 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 1114 1 76 7 0 21 0 LINC01599
SE_02_066100565 chr14:50060334-50083093 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 565 4 607 74 0 30 0 LINC01599,VCPKMT
SE_02_122200139 chr14:50060616-50087921 Sample_02_1222 Bone marrow KMS12 139 5 741 83 0 24 215 LINC01599,VCPKMT
SE_02_142901052 chr14:50060644-50088641 Sample_02_1429 Blood GM12878_WT 1052 7 764 83 0 24 215 LINC01599,VCPKMT,C14orf183,L2HGDH
SE_02_122300646 chr14:50060648-50067898 Sample_02_1223 Bone marrow KMS28BM 646 2 191 11 0 18 0 LINC01599,VCPKMT
SE_02_122100530 chr14:50060648-50068704 Sample_02_1221 Bone marrow KMS11 530 3 215 12 0 18 0 LINC01599,VCPKMT
SE_02_073600102 chr14:50060754-50095859 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 102 11 970 103 0 27 459 LINC01599,VCPKMT
SE_02_045400627 chr14:50080540-50103652 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 627 10 641 62 2 7 459 LINC01599,VCPKMT
SE_02_045600475 chr14:50080545-50105131 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 475 9 682 68 2 12 459 LINC01599,VCPKMT
SE_00_004700373 chr14:50080835-50096807 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 373 4 452 34 0 7 459 LINC01599,VCPKMT
SE_02_139300307 chr14:50081458-50102565 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 307 9 583 56 2 6 459 LINC01599,VCPKMT
SE_02_082700950 chr14:50097833-50113970 Sample_02_0827 Stomach normal gastric 950 3 487 71 2 13 167 VCPKMT,LINC01599

Genomic distribution of SEs associated with LINC01599

The strength of the tissue affected by the gene


Expression of LINC01599