SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000238120
Gene: LINC01589 Gene type: lncRNA
Strand: - External links:
Genomic region: chr22:45604432-45605621 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099100094 chr22:45504804-45553788 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 94 16 1692 77 4 113 1303 FBLN1,LINC01589
SE_02_104600198 chr22:45512490-45650939 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 198 46 4613 302 12 287 3322 FBLN1,LINC01589,ATXN10
SE_02_126800656 chr22:45537458-45553934 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 656 4 577 15 0 65 574 FBLN1,LINC01589
SE_02_126501406 chr22:45537461-45553920 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1406 4 575 15 0 65 574 FBLN1,LINC01589
SE_02_126900462 chr22:45537473-45554472 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 462 5 593 15 0 67 574 FBLN1,LINC01589
SE_02_103502094 chr22:45539246-45579839 Sample_02_1035 Mammary gland HCC70_Vehicle 2094 18 1333 46 3 120 1333 FBLN1,LINC01589
SE_02_113200243 chr22:45571727-45646745 Sample_02_1132 Pancreas KLM1 wt 243 34 2450 199 6 145 1493 FBLN1,LINC01589,ATXN10
SE_02_127300057 chr22:45573517-45647934 Sample_02_1273 Cervix HeLa 57 14 2442 204 6 145 1493 FBLN1,LINC01589,ATXN10
SE_02_109800157 chr22:45573967-45610573 Sample_02_1098 Blood THP1_DMSO_noPMA 157 14 1268 91 3 81 1431 FBLN1,LINC01589
SE_02_133100037 chr22:45574047-45658224 Sample_02_1331 Blood Molm13_CTRL 37 21 2760 221 6 153 1493 FBLN1,LINC01589,ATXN10
SE_02_084100325 chr22:45574122-45619207 Sample_02_0841 Blood THP-1_untr 325 10 1542 110 3 83 1431 FBLN1,LINC01589
SE_02_102900578 chr22:45574410-45647925 Sample_02_1029 Colon HCT116 578 21 2416 202 6 145 1479 FBLN1,LINC01589,ATXN10
SE_02_080800326 chr22:45575618-45649553 Sample_02_0808 Ovary RMG1_ARID1A KO 326 36 2424 203 6 153 1387 FBLN1,LINC01589,ATXN10
SE_02_099400761 chr22:45576840-45613058 Sample_02_0994 Blood MOLM13_SIK3TQ 761 14 1248 93 2 80 1309 FBLN1,LINC01589
SE_02_103000509 chr22:45576886-45646278 Sample_02_1030 Colon DKO 509 20 2280 192 5 138 1362 FBLN1,LINC01589,ATXN10
SE_02_099300591 chr22:45577359-45613036 Sample_02_0993 Blood MOLM-13_empty 591 23 1226 93 2 77 1198 FBLN1,LINC01589
SE_02_099500677 chr22:45577461-45612952 Sample_02_0995 Blood MOLM-13_empty vector 677 20 1218 93 2 77 1198 FBLN1,LINC01589
SE_04_000900173 chr22:45577556-45646958 Sample_04_0009 Lung A549 173 9 2271 194 5 139 1260 FBLN1,LINC01589,ATXN10
SE_02_050500213 chr22:45577572-45648873 Sample_02_0505 Esophagus KYSE70_1 213 26 2328 199 5 147 1260 FBLN1,LINC01589,ATXN10
SE_02_051600212 chr22:45577572-45648873 Sample_02_0516 Esophagus KYSE70 212 27 2328 199 5 147 1260 FBLN1,LINC01589,ATXN10
SE_02_049100441 chr22:45577632-45648223 Sample_02_0491 Pharyng Detroit 562-Control 441 15 2309 199 5 139 1260 FBLN1,LINC01589,ATXN10
SE_02_076200738 chr22:45577696-45646435 Sample_02_0762 Podocyte podocyte_CTL 738 10 2254 192 5 137 1260 FBLN1,LINC01589,ATXN10
SE_02_082600441 chr22:45577718-45648488 Sample_02_0826 Stomach gastric tumor 441 32 2312 199 5 142 1260 FBLN1,LINC01589,ATXN10
SE_02_049200466 chr22:45577735-45648051 Sample_02_0492 Pharyng Detroit 562_LPS 466 19 2301 199 5 139 1260 FBLN1,LINC01589,ATXN10
SE_02_076800113 chr22:45577939-45647286 Sample_02_0768 Ovary SKOV3 113 32 2278 196 5 139 1260 FBLN1,LINC01589,ATXN10
SE_02_050600625 chr22:45578538-45645806 Sample_02_0506 Esophagus TE5_1 625 18 2218 192 5 115 1260 FBLN1,LINC01589,ATXN10
SE_02_051700626 chr22:45578538-45645806 Sample_02_0517 Esophagus TE5 626 18 2218 192 5 115 1260 FBLN1,LINC01589,ATXN10
SE_00_005300689 chr22:45579346-45588713 Sample_00_0053 Embryo trophoblast cell originated from H1 689 3 320 35 0 20 0 FBLN1,LINC01589
SE_02_134500450 chr22:45580494-45616997 Sample_02_1345 Leukophereses leukophereses_p358 450 12 1264 100 2 49 1198 FBLN1,LINC01589
SE_02_141800614 chr22:45588219-45613332 Sample_02_1418 Brain SF9427 614 5 873 61 2 34 1198 FBLN1,LINC01589
SE_02_071300641 chr22:45596994-45646328 Sample_02_0713 Pancreas BxPC3_sgTP63 641 17 1604 137 4 72 1260 FBLN1,LINC01589,ATXN10
SE_02_136700554 chr22:45597009-45646379 Sample_02_1367 Pancreas Capan1-untreated 554 16 1606 137 4 72 1257 FBLN1,LINC01589,ATXN10
SE_02_103601236 chr22:45597012-45655650 Sample_02_1036 Mammary gland HCC70_XY018 1236 27 1910 158 4 83 1257 FBLN1,LINC01589,ATXN10
SE_02_071200442 chr22:45597092-45646242 Sample_02_0712 Pancreas BxPC3_sgNEG 442 14 1603 137 4 71 1248 FBLN1,LINC01589,ATXN10
SE_02_125400230 chr22:45597149-45645721 Sample_02_1254 Bladder Bladder tumor Basal1 230 11 1590 136 4 71 1239 FBLN1,LINC01589,ATXN10
SE_02_105400430 chr22:45597291-45646027 Sample_02_1054 Esophagus SKGT4 430 13 1588 137 4 71 1219 FBLN1,LINC01589,ATXN10
SE_02_136600770 chr22:45597301-45645741 Sample_02_1366 Pancreas BxPC3-untreated 770 15 1583 137 4 71 1217 FBLN1,LINC01589,ATXN10
SE_02_102700053 chr22:45597304-45650116 Sample_02_1027 Esophagus KYSE180_1 53 23 1722 146 4 83 1217 FBLN1,LINC01589,ATXN10
SE_02_103100379 chr22:45599566-45650439 Sample_02_1031 Head and neck SCC1 contol 379 20 1643 143 4 82 797 FBLN1,LINC01589,ATXN10
SE_02_158200399 chr22:45600422-45645697 Sample_02_1582 Renal OS-RC-2 399 10 1440 126 4 61 658 FBLN1,LINC01589,ATXN10
SE_02_103800254 chr22:45600523-45645742 Sample_02_1038 Pharynx FaDu LPS 254 17 1438 127 4 61 646 FBLN1,LINC01589,ATXN10
SE_02_158100400 chr22:45601032-45609993 Sample_02_1581 Renal OS-LM1 400 2 299 19 0 0 521 FBLN1,LINC01589
SE_02_102500356 chr22:45601165-45646623 Sample_02_1025 Esophagus KYSE150 356 10 1436 126 4 64 565 LINC01589,ATXN10
SE_02_154000113 chr22:45601468-45647704 Sample_02_1540 Nasopharyngeal HK1 113 14 1457 130 4 64 498 LINC01589,ATXN10
SE_02_061001091 chr22:45601661-45613655 Sample_02_0610 Liposarcoma MLS 1765-92 1091 2 392 28 1 2 403 LINC01589
SE_02_113100120 chr22:45601911-45645688 Sample_02_1131 Pancreas T3M4 wt 120 15 1388 123 4 60 412 LINC01589,ATXN10
SE_02_126501062 chr22:45602127-45613819 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1062 4 380 27 1 2 310 LINC01589
SE_02_151000609 chr22:45602191-45640623 Sample_02_1510 Lung H3122_LR_Pano 609 12 1239 105 2 55 357 LINC01589,ATXN10
SE_02_081100501 chr22:45602247-45645682 Sample_02_0811 Thyroid BCPAP 501 13 1376 122 4 60 344 LINC01589,ATXN10
SE_02_126900940 chr22:45602257-45613519 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 940 4 368 26 1 2 280 LINC01589
SE_02_094700117 chr22:45602295-45646319 Sample_02_0947 Tongue Cal27 117 9 1388 123 4 61 329 LINC01589,ATXN10
SE_02_094600569 chr22:45602330-45646279 Sample_02_0946 Tongue HN12 569 8 1388 123 4 61 320 LINC01589,ATXN10
SE_02_126800574 chr22:45602339-45613681 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 574 6 370 26 1 2 258 LINC01589
SE_02_103700330 chr22:45602423-45645738 Sample_02_1037 Pharynx FaDu Control 330 11 1375 123 4 60 301 LINC01589,ATXN10
SE_02_126701510 chr22:45603011-45619160 Sample_02_1267 Bone Im-GCT-4072_G34W 1510 5 520 34 1 2 142 LINC01589
SE_02_071500030 chr22:45603053-45645595 Sample_02_0715 Pancreas SUIT2_TP63dN 30 8 1344 120 4 60 204 LINC01589,ATXN10
SE_02_048102120 chr22:45603116-45645778 Sample_02_0481 Mammary gland MDA-MB231 2120 10 1347 120 4 60 204 LINC01589,ATXN10
SE_02_071900102 chr22:45603288-45640736 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 102 8 1199 100 2 55 204 LINC01589,ATXN10
SE_02_154101152 chr22:45603342-45642699 Sample_02_1541 Nasopharyngeal HNE1 1152 7 1264 109 2 56 204 LINC01589,ATXN10
SE_02_072100307 chr22:45603373-45643444 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 307 12 1276 111 2 60 204 LINC01589,ATXN10
SE_02_071700256 chr22:45603395-45645783 Sample_02_0717 Pancreas HPAFII_GFP_DOX 256 12 1336 118 4 60 204 LINC01589,ATXN10
SE_02_125900936 chr22:45603462-45614471 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 936 6 351 23 1 2 142 LINC01589
SE_02_153700582 chr22:45603471-45639775 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 582 6 1160 97 2 55 204 LINC01589,ATXN10
SE_02_153600527 chr22:45603478-45639646 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 527 6 1157 97 2 55 204 LINC01589,ATXN10
SE_02_071600146 chr22:45603513-45645739 Sample_02_0716 Pancreas SUIT2_GFP 146 9 1332 118 4 60 204 LINC01589,ATXN10
SE_02_065201048 chr22:45603591-45645682 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1048 10 1328 117 4 60 204 LINC01589,ATXN10
SE_02_071400082 chr22:45603599-45645972 Sample_02_0714 Pancreas SUIT2_MTV 82 9 1333 118 4 60 204 LINC01589,ATXN10
SE_02_064701161 chr22:45603614-45640009 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1161 10 1168 98 2 55 204 LINC01589,ATXN10
SE_02_147000346 chr22:45604670-45645945 Sample_02_1470 Umbilical Vein H441 346 7 1302 116 4 60 151 LINC01589,ATXN10
SE_02_138800948 chr22:45607538-45619786 Sample_02_1388 Peripheral blood JB6_ALK+ 948 3 387 26 1 2 0 LINC01589
SE_02_137000455 chr22:45608382-45645707 Sample_02_1370 Pancreas Patu8902-untreated 455 8 1160 107 4 60 62 ATXN10,LINC01589
SE_02_136500359 chr22:45624698-45647803 Sample_02_1365 Pancreas AsPC1-untreated 359 9 718 63 3 58 24 ATXN10,LINC01589
SE_02_123000685 chr22:45624724-45646341 Sample_02_1230 Lung PC9 685 6 674 57 3 55 16 ATXN10,LINC01589
SE_02_102600466 chr22:45624824-45646532 Sample_02_1026 Esophagus KYSE200 466 8 672 56 3 58 0 ATXN10,LINC01589
SE_02_070500478 chr22:45625429-45646327 Sample_02_0705 Pancreas AsPC1 WT 478 7 651 54 3 55 0 ATXN10,LINC01589
SE_02_123200453 chr22:45625465-45645638 Sample_02_1232 Lung PC9_siMED13L-2 453 4 637 53 3 54 0 ATXN10,LINC01589
SE_02_123100392 chr22:45625479-45646220 Sample_02_1231 Lung PC9_siMED13L-1 392 6 650 54 3 54 0 ATXN10,LINC01589
SE_02_123300594 chr22:45625545-45646436 Sample_02_1233 Lung PC9_miR-4497 mimic 594 5 651 54 3 55 0 ATXN10,LINC01589
SE_02_070600301 chr22:45625578-45643324 Sample_02_0706 Pancreas SUIT2 WT 301 7 572 47 1 51 0 ATXN10,LINC01589
SE_02_076600767 chr22:45625603-45646479 Sample_02_0766 Ovary PEO1 767 13 649 54 3 57 0 ATXN10,LINC01589
SE_02_070400250 chr22:45625630-45640504 Sample_02_0704 Pancreas HPAFII WT 250 5 489 35 1 48 0 ATXN10,LINC01589
SE_02_070900505 chr22:45625740-45646251 Sample_02_0709 Pancreas hT85_organoid 505 9 642 54 3 53 0 ATXN10,LINC01589
SE_02_130500603 chr22:45625745-45642904 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 603 5 561 45 1 49 0 ATXN10,LINC01589
SE_02_050700178 chr22:45625849-45646384 Sample_02_0507 Esophagus TE7_1 178 11 641 54 3 54 0 ATXN10,LINC01589
SE_02_103501948 chr22:45625968-45646384 Sample_02_1035 Mammary gland HCC70_Vehicle 1948 13 637 54 3 54 0 ATXN10,LINC01589
SE_02_094500277 chr22:45626042-45646736 Sample_02_0945 Brain SF767 277 7 641 55 3 57 0 ATXN10,LINC01589
Genomic distribution of SEs associated with LINC01589
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01589

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)