SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000236882
Gene: LINC01554 Gene type: lncRNA
Strand: + External links:
Genomic region: chr5:95838245-95860133 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009400187 chr5:95801858-95884696 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 187 17 2240 214 14 134 739 GLRX,LINC01554
SE_01_009700242 chr5:95802988-95884417 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 242 12 2197 210 14 133 739 GLRX,LINC01554
SE_02_104300645 chr5:95807536-95878576 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 645 34 1922 196 12 116 739 GLRX,LINC01554
SE_02_155300388 chr5:95807611-95869388 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 388 23 1670 183 12 97 739 GLRX,LINC01554
SE_02_066300267 chr5:95807813-95893535 Sample_02_0663 Thyroid TT 267 23 2231 207 13 192 1085 ELL2,GLRX,LINC01554
SE_02_142600096 chr5:95807942-95884963 Sample_02_1426 Shoulder fibroblast_341 96 26 2053 197 13 132 749 GLRX,LINC01554
SE_02_131500213 chr5:95808013-95871353 Sample_02_1315 Brain hMGLs_INPP5D SNP 213 23 1700 179 12 109 739 GLRX,LINC01554
SE_02_119200145 chr5:95808181-95882764 Sample_02_1192 Brain GBM26 145 15 2005 194 12 130 739 GLRX,LINC01554
SE_02_131000102 chr5:95808190-95931209 Sample_02_1310 Bone marrow ASMSCs 102 21 3237 286 18 333 1419 ELL2,GLRX,LINC01554,LOC101929710
SE_02_142700152 chr5:95808212-95884564 Sample_02_1427 Shoulder fibroblast_343 152 23 2041 195 13 132 739 GLRX,LINC01554
SE_02_119100137 chr5:95808224-95871387 Sample_02_1191 Brain GBM25 137 22 1699 179 12 109 739 GLRX,LINC01554
SE_02_158400267 chr5:95808355-95870568 Sample_02_1584 Brain U87 GBM_Mock 267 12 1671 179 12 100 739 GLRX,LINC01554
SE_02_131100143 chr5:95808453-95884071 Sample_02_1311 Bone marrow HDMSCs 143 16 2018 195 13 132 739 GLRX,LINC01554
SE_02_056900277 chr5:95808540-95885226 Sample_02_0569 Periodontal ligament mesenchymal stem cell 277 20 2041 195 13 132 773 ELL2,GLRX,LINC01554
SE_02_119600521 chr5:95809233-95871850 Sample_02_1196 Brain GBM32 521 24 1681 174 12 113 739 GLRX,LINC01554
SE_02_143700829 chr5:95809443-95884554 Sample_02_1437 Liver LSEC-TNF 829 18 1996 187 13 132 739 GLRX,LINC01554
SE_02_143800617 chr5:95809844-95885215 Sample_02_1438 Liver LSEC 617 15 2002 187 13 132 771 ELL2,GLRX,LINC01554
SE_02_143600639 chr5:95810699-95870747 Sample_02_1436 Liver LSEC-Ctrl 639 15 1616 170 12 100 739 GLRX,LINC01554
SE_02_137700182 chr5:95812344-95870975 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 182 23 1566 169 12 101 739 GLRX,LINC01554
SE_02_048100347 chr5:95816769-95864579 Sample_02_0481 Mammary gland MDA-MB231 347 10 1286 155 7 70 547 GLRX,LINC01554
SE_02_132000498 chr5:95817165-95871274 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 498 13 1437 160 9 102 546 GLRX,LINC01554
SE_02_127300206 chr5:95821425-95871915 Sample_02_1273 Cervix HeLa 206 8 1357 152 7 107 546 GLRX,LINC01554
SE_02_151300973 chr5:95832460-95844390 Sample_02_1513 Lung Transitional AT2->1 cells 973 4 309 41 2 6 0 GLRX,LINC01554
SE_02_077100658 chr5:95834038-95870571 Sample_02_0771 Ovary OVCA429_shGRHL2 658 15 998 111 5 80 420 LINC01554,GLRX
SE_02_067100147 chr5:95834048-95884552 Sample_02_0671 Mammary gland breast cancer_DSG 147 22 1358 127 6 112 420 LINC01554,GLRX
SE_02_089300669 chr5:95834049-95870329 Sample_02_0893 Heart left ventricle_LV1226 669 8 990 111 5 80 420 LINC01554,GLRX,C5orf27
SE_02_053300723 chr5:95834069-95871471 Sample_02_0533 Blood vessel Circle of Willis_54y 723 15 1019 111 5 92 420 LINC01554,GLRX
SE_02_060600874 chr5:95834226-95863798 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 874 6 839 101 3 54 420 LINC01554,GLRX,TTC37
SE_01_010101077 chr5:95834281-95870701 Sample_01_0101 Pancreas pancreas_54y 1077 9 997 109 5 80 420 LINC01554,GLRX
SE_02_076300994 chr5:95834287-95880188 Sample_02_0763 Podocyte podocyte_DEX 994 10 1250 122 5 98 420 LINC01554,GLRX
SE_02_060500909 chr5:95834300-95867158 Sample_02_0605 Skin Skin Fibroblast_DMSO 909 6 910 104 4 75 420 LINC01554,GLRX,TTC37
SE_02_145400182 chr5:95834417-95907891 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 182 15 1898 172 9 230 1024 ELL2,LINC01554,GLRX
SE_02_137400477 chr5:95834455-95870682 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 477 20 988 108 5 80 420 LINC01554,GLRX
SE_02_145200184 chr5:95834472-95870936 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 184 9 996 108 5 81 420 LINC01554,GLRX
SE_02_118800466 chr5:95834589-95871115 Sample_02_1188 Brain GBM18 466 12 998 108 5 89 420 LINC01554,GLRX
SE_00_004600866 chr5:95834680-95863340 Sample_00_0046 Heart right ventricle_34y 866 8 816 99 3 53 420 LINC01554,GLRX
SE_02_047600265 chr5:95834701-95880063 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 265 15 1234 121 5 98 420 LINC01554,GLRX
SE_02_138000372 chr5:95834816-95884361 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 372 17 1337 124 6 112 420 LINC01554,GLRX
SE_02_095100307 chr5:95838302-95868974 Sample_02_0951 HMSCs hMSCs 307 16 856 97 4 72 420 LINC01554,GLRX
SE_02_132201375 chr5:95842912-95870856 Sample_02_1322 Connective Tissue HT1080_WT 1375 6 785 84 4 76 420 LINC01554,GLRX
SE_02_077501022 chr5:95849219-95881581 Sample_02_0775 Pancreas EndoC-BH1_SE 1022 15 902 73 4 101 420 LINC01554,GLRX
SE_02_079100105 chr5:95849226-95870723 Sample_02_0791 Brain 2455 105 5 618 60 4 72 420 LINC01554,GLRX
SE_02_077600067 chr5:95849624-95942393 Sample_02_0776 Pancreas EndoC-BH1 67 32 2416 191 11 352 1100 ELL2,LINC01554,LOC101929710,GLRX
SE_02_046500962 chr5:95855851-95863492 Sample_02_0465 Adipose subcutaneous adipocytes 962 1 244 23 2 44 280 LINC01554,GLRX
SE_02_046600920 chr5:95856437-95864317 Sample_02_0466 Adipose visceral adipocytes 920 1 243 22 2 43 280 LINC01554,GLRX,ELL2
SE_02_142800581 chr5:95856487-95865709 Sample_02_1428 Shoulder fibroblast_316 581 1 274 22 2 53 280 LINC01554,GLRX
SE_02_116801009 chr5:95856495-95863748 Sample_02_1168 Biliary H69_TGF Vehicle_2 1009 1 235 21 2 41 280 LINC01554,GLRX
SE_02_116900953 chr5:95856509-95870663 Sample_02_1169 Biliary H69_TGF beta_16h_2 953 3 391 29 4 66 280 LINC01554,GLRX
SE_02_116700869 chr5:95856532-95863770 Sample_02_1167 Biliary H69_TGF Vehicle_1 869 1 231 20 2 40 280 LINC01554,GLRX
SE_02_116600935 chr5:95856535-95864225 Sample_02_1166 Biliary H69_TGF beta_16h_1 935 1 236 20 2 40 280 LINC01554,GLRX
SE_02_156600782 chr5:95856865-95864027 Sample_02_1566 Dermal Dermal fibroblast 782 1 227 20 2 40 256 LINC01554,GLRX
SE_02_072700528 chr5:95856887-95871132 Sample_02_0727 Fetal lung IMR90_Etoposide 528 6 394 28 4 75 254 LINC01554,GLRX
SE_02_138800312 chr5:95857019-95888273 Sample_02_1388 Peripheral blood JB6_ALK+ 312 5 807 47 5 126 486 ELL2,LINC01554,GLRX
SE_02_137900434 chr5:95857111-95870837 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 434 5 386 27 4 67 239 LINC01554,GLRX
SE_02_062000783 chr5:95857136-95870810 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 783 9 385 27 4 67 238 LINC01554,GLRX
SE_02_137501043 chr5:95857151-95863406 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 1043 3 213 18 2 40 234 LINC01554,GLRX
SE_02_117500795 chr5:95857159-95870923 Sample_02_1175 Brain GBM03 795 7 386 27 4 67 234 LINC01554,GLRX
SE_02_139000337 chr5:95857209-95884798 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 337 6 743 43 5 98 234 LINC01554,GLRX
SE_02_047500162 chr5:95857265-95884922 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 162 6 742 43 5 98 234 LINC01554,GLRX
SE_02_125400303 chr5:95857322-95884923 Sample_02_1254 Bladder Bladder tumor Basal1 303 11 742 43 5 98 234 LINC01554,GLRX
SE_02_138900245 chr5:95857328-95891117 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 245 6 872 48 5 148 555 ELL2,LINC01554,GLRX
SE_02_047400501 chr5:95857334-95870962 Sample_02_0474 Fibroblast umbilical cord Fibroblast 501 5 388 27 4 67 234 LINC01554,GLRX
SE_02_067000224 chr5:95857367-95871342 Sample_02_0670 Mammary gland breast cancer FA 224 9 393 27 4 75 234 LINC01554,GLRX
SE_02_058800291 chr5:95857391-95870962 Sample_02_0588 Cervix HeLa Kyoto_untreated 291 10 386 27 4 67 234 LINC01554,GLRX
SE_02_126900865 chr5:95857395-95865549 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 865 2 253 20 2 52 234 LINC01554,GLRX
SE_02_149400549 chr5:95857630-95870923 Sample_02_1494 Other monocyte-derived dendritic cells_0h 549 9 378 26 3 61 234 LINC01554,GLRX
SE_02_058900293 chr5:95857967-95866054 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 293 5 250 18 1 46 234 LINC01554,GLRX
Genomic distribution of SEs associated with LINC01554
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01554

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)