Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000233723
Gene: LINC01122 Gene type: lncRNA
Strand: + External links:
Genomic region: chr2:58427799-59063766 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_156701115 chr2:58427181-58450539 Sample_02_1567 iPSCs CiPSC 1115 5 582 12 4 93 0 LINC01122
SE_02_157001435 chr2:58427225-58450405 Sample_02_1570 iPSCs EiPSC 1435 6 581 12 4 93 0 LINC01122
SE_02_075500787 chr2:58427236-58448171 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 787 4 520 10 3 74 0 LINC01122
SE_02_049300299 chr2:58427247-58434761 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 299 4 180 3 1 0 0 LINC01122
SE_02_141000343 chr2:58467001-58571931 Sample_02_1410 Brain GSC6 343 18 2620 35 3 598 49 LINC01122
SE_02_068700356 chr2:58496921-58544939 Sample_02_0687 Lung NCI-H146_no infection 356 14 1175 19 0 292 49 LINC01122
SE_02_123600238 chr2:58512621-58544071 Sample_02_1236 Skin MKL1_virus_positive 238 14 741 12 0 261 49 LINC01122
SE_02_123700331 chr2:58517900-58548143 Sample_02_1237 Skin MKL2_virus_positive 331 13 724 13 0 258 49 LINC01122
SE_02_067700036 chr2:58529542-58554119 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 36 17 649 16 2 170 0 LINC01122
SE_02_117200110 chr2:58531378-58570467 Sample_02_1172 Embryo H9 WT 110 5 968 21 3 279 0 LINC01122
SE_02_157000049 chr2:58532540-58571415 Sample_02_1570 iPSCs EiPSC 49 7 967 22 3 282 0 LINC01122
SE_02_074200378 chr2:58532905-58553618 Sample_02_0742 Embryo ESCs_day0 378 9 541 15 2 168 0 LINC01122
SE_02_067500115 chr2:58532922-58553897 Sample_02_0675 Embryo H1 hESC-derived neural progenitor cells_Smad_0hr 115 15 552 15 2 168 0 LINC01122
SE_02_156700055 chr2:58533414-58571368 Sample_02_1567 iPSCs CiPSC 55 9 943 22 3 281 0 LINC01122
SE_02_086100018 chr2:58533460-58570624 Sample_02_0861 iPSCs SAH_WT 18 12 924 22 3 277 0 LINC01122
SE_02_157200124 chr2:58533498-58554168 Sample_02_1572 iPSCs FiPSC 124 4 545 15 2 168 0 LINC01122
SE_02_067900272 chr2:58533906-58545119 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 272 13 265 4 0 153 0 LINC01122
SE_02_067600223 chr2:58533952-58544167 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 223 10 244 3 0 151 0 LINC01122
SE_02_086000348 chr2:58534242-58542994 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 348 6 215 3 0 109 0 LINC01122
SE_02_067800250 chr2:58534242-58543261 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 250 10 221 3 0 109 0 LINC01122
SE_02_151600898 chr2:58607051-58635222 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 898 5 771 12 3 0 0 LINC01122
SE_02_151500870 chr2:58607280-58638859 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 870 7 852 10 4 0 0 LINC01122
SE_02_050700476 chr2:58612875-58635592 Sample_02_0507 Esophagus TE7_1 476 10 593 6 2 0 0 LINC01122
SE_02_103300093 chr2:58663969-58769643 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 93 17 2833 58 15 257 0 LINC01122
SE_02_054500817 chr2:58687830-58735756 Sample_02_0545 Bone marrow K562 WT 817 8 1269 42 6 0 0 LINC01122
SE_02_113000656 chr2:58709159-58741165 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 656 13 811 11 7 0 0 LINC01122
SE_02_133900057 chr2:58710324-58739630 Sample_02_1339 Bone marrow ficolled whole bone marrow 57 15 735 8 7 0 0 LINC01122
SE_02_143000353 chr2:58717901-58741245 Sample_02_1430 Blood Kasumi-3_mock-infected 353 7 573 1 7 0 0 LINC01122
SE_02_057600369 chr2:58726263-58765727 Sample_02_0576 Blood HEL_sgLKB1e2 369 15 1013 1 10 144 0 LINC01122
SE_02_058000425 chr2:58726267-58765265 Sample_02_0580 Blood HEL_sgSIK3e4 425 15 1002 1 10 144 0 LINC01122
SE_02_057900392 chr2:58726300-58764996 Sample_02_0579 Blood HEL_sgNeg2 392 18 994 1 10 144 0 LINC01122
SE_02_133900024 chr2:58756492-58785131 Sample_02_1339 Bone marrow ficolled whole bone marrow 24 7 644 2 2 321 0 LINC01122

Genomic distribution of SEs associated with LINC01122

The strength of the tissue affected by the gene


Expression of LINC01122