SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000243083
Gene: LINC00870 Gene type: lncRNA
Strand: + External links:
Genomic region: chr3:72151236-72207776 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_127200866 chr3:71982315-72000503 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 866 7 578 16 7 17 0 LINC00877,LINC00870
SE_02_147800232 chr3:72117967-72158010 Sample_02_1478 Bone EW-3 232 12 1191 19 5 71 74 LINC00870,LINC00877
SE_02_098800203 chr3:72127330-72190365 Sample_02_0988 Blood K562_EPZ 203 24 1854 30 11 89 485 LINC00870,LINC00877
SE_04_000100413 chr3:72132627-72191100 Sample_04_0001 Blood heat shocked K562 413 10 1724 24 9 85 485 LINC00870,LINC00877
SE_02_109900584 chr3:72135253-72194151 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 584 24 1719 22 8 97 485 LINC00870,LINC00877
SE_02_098700489 chr3:72135273-72194242 Sample_02_0987 Blood K562_Control_1 489 15 1722 22 8 99 485 LINC00870,LINC00877
SE_02_054500402 chr3:72138039-72194698 Sample_02_0545 Bone marrow K562 WT 402 18 1640 21 8 98 485 LINC00870,LINC00877
SE_02_077600502 chr3:72140732-72170212 Sample_02_0776 Pancreas EndoC-BH1 502 3 840 11 3 54 133 LINC00870,LINC00877
SE_02_157300012 chr3:72141335-72195570 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 12 12 1550 21 8 96 485 LINC00870,LINC00877
SE_02_121300388 chr3:72143878-72194297 Sample_02_1213 Brain GBM31 388 17 1452 21 8 95 485 LINC00870,LINC00877
SE_02_077500913 chr3:72144639-72170896 Sample_02_0775 Pancreas EndoC-BH1_SE 913 5 762 12 4 53 133 LINC00870,LINC00877
SE_02_117300624 chr3:72144652-72190417 Sample_02_1173 Brain GBM01 624 20 1322 21 8 79 485 LINC00870,LINC00877
SE_02_120400459 chr3:72144666-72189855 Sample_02_1204 Brain NB2 459 11 1304 21 8 78 485 LINC00870,LINC00877
SE_02_101300214 chr3:72144671-72190195 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 214 17 1313 21 8 78 485 LINC00870,LINC00877
SE_02_119601185 chr3:72144715-72190364 Sample_02_1196 Brain GBM32 1185 17 1318 21 8 78 485 LINC00870,LINC00877
SE_02_120300504 chr3:72144725-72190318 Sample_02_1203 Brain NB1 504 16 1318 21 8 78 485 LINC00870,LINC00877
SE_02_119800855 chr3:72144781-72186983 Sample_02_1198 Brain GBM34 855 18 1221 21 7 78 485 LINC00870,LINC00877
SE_02_120500947 chr3:72144784-72190178 Sample_02_1205 Brain NB3 947 13 1311 21 8 78 485 LINC00870,LINC00877
SE_02_100700172 chr3:72144803-72172366 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 172 6 797 12 4 56 218 LINC00870,LINC00877
SE_02_100000088 chr3:72145824-72188845 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 88 16 1246 21 7 75 485 LINC00870,LINC00877
SE_02_100900202 chr3:72155110-72190212 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 202 10 1002 19 7 48 411 LINC00870
SE_02_121900481 chr3:72157825-72179265 Sample_02_1219 Bone marrow H929 481 8 603 14 5 38 411 LINC00870
SE_01_009600521 chr3:72158009-72186835 Sample_01_0096 B-cell lymphoma DOHH2 521 6 831 19 6 48 411 LINC00870
SE_02_122700626 chr3:72161745-72186493 Sample_02_1227 Bone marrow U266 626 5 722 17 5 31 352 LINC00870
SE_02_115700268 chr3:72161775-72186945 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 268 16 728 17 5 31 352 LINC00870
SE_02_115600245 chr3:72162277-72187328 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 245 10 720 17 5 31 352 LINC00870
SE_02_122000489 chr3:72162345-72178473 Sample_02_1220 Bone marrow JJN3 489 2 457 11 3 20 352 LINC00870
SE_02_100100154 chr3:72172397-72177182 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 154 2 135 3 0 4 255 LINC00870
SE_02_044600677 chr3:72214167-72319653 Sample_02_0446 Bone osteosarcoma tumor P2 677 30 3246 44 16 247 0 LINC00870
SE_02_147500430 chr3:72220637-72290091 Sample_02_1475 Bone CHLA-25 430 17 2118 32 7 181 0 LINC00870
SE_02_120500430 chr3:72229954-72290343 Sample_02_1205 Brain NB3 430 20 1877 30 5 123 0 LINC00870
SE_02_121300187 chr3:72229979-72291783 Sample_02_1213 Brain GBM31 187 18 1914 30 5 129 0 LINC00870
SE_02_120300194 chr3:72230447-72291782 Sample_02_1203 Brain NB1 194 24 1898 30 5 128 0 LINC00870
SE_02_117300259 chr3:72230727-72291936 Sample_02_1173 Brain GBM01 259 29 1897 30 5 128 0 LINC00870
SE_02_120400192 chr3:72230817-72291789 Sample_02_1204 Brain NB2 192 21 1888 30 5 128 0 LINC00870
SE_02_119600579 chr3:72230834-72290044 Sample_02_1196 Brain GBM32 579 22 1845 30 5 122 0 LINC00870
SE_02_119800435 chr3:72230853-72289892 Sample_02_1198 Brain GBM34 435 22 1842 30 5 122 0 LINC00870
SE_02_101300127 chr3:72230968-72291780 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 127 31 1880 30 5 128 0 LINC00870
SE_02_100000162 chr3:72231042-72257090 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 162 12 816 19 2 59 0 LINC00870
SE_02_100700154 chr3:72231043-72247855 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 154 8 552 13 2 39 0 LINC00870
SE_02_100500136 chr3:72231321-72260894 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 136 9 935 22 2 76 0 LINC00870
SE_02_055300111 chr3:72231413-72319394 Sample_02_0553 Other HSSY2 shCt 111 24 2717 35 14 188 0 LINC00870
SE_02_110200210 chr3:72231506-72348013 Sample_02_1102 Brain LA-N-5 210 49 3567 68 19 261 0 LINC00870
SE_02_100900061 chr3:72231697-72289912 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 61 17 1815 30 5 120 0 LINC00870
SE_02_100800205 chr3:72231772-72261876 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 205 10 952 22 2 74 0 LINC00870
SE_02_110800158 chr3:72231793-72354024 Sample_02_1108 Brain SK-N-BE_2_-C 158 37 3740 80 19 262 0 LINC00870
SE_02_100600188 chr3:72234052-72259136 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 188 4 759 14 2 64 0 LINC00870
SE_02_105800362 chr3:72234052-72319559 Sample_02_1058 Bone A673_SA2 Rescue 362 29 2612 29 14 185 0 LINC00870
SE_02_115600412 chr3:72255277-72275354 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 412 10 617 9 1 57 0 LINC00870
SE_02_055200314 chr3:72268736-72304218 Sample_02_0552 Other SYO1 shCt 314 13 1069 8 4 84 0 LINC00870
SE_02_100000377 chr3:72272345-72290077 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 377 6 540 4 2 35 0 LINC00870
Genomic distribution of SEs associated with LINC00870
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00870

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)