SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000233208
Gene: LINC00642 Gene type: lncRNA
Strand: + External links:
Genomic region: chr14:90453571-90490763 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110500322 chr14:90399457-90465172 Sample_02_1105 Brain NBL-S 322 23 1895 64 3 168 901 CALM1,LINC00642
SE_02_103100444 chr14:90409949-90457939 Sample_02_1031 Head and neck SCC1 contol 444 13 1432 49 1 60 256 LINC00642,CALM1
SE_02_104601812 chr14:90419226-90465196 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1812 11 1361 32 1 71 333 LINC00642,CALM1
SE_02_123500461 chr14:90435833-90454464 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 461 13 492 16 1 20 0 LINC00642,CALM1
SE_02_106300231 chr14:90436047-90455868 Sample_02_1063 Brain CLB-GA-control 231 10 527 16 1 24 93 LINC00642,CALM1
SE_02_106400210 chr14:90436392-90455465 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 210 6 497 16 1 24 77 LINC00642,CALM1
SE_02_103700273 chr14:90438267-90445450 Sample_02_1037 Pharynx FaDu Control 273 5 171 6 0 14 0 LINC00642,CALM1
SE_02_104600124 chr14:90483578-90631147 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 124 70 4731 159 15 354 659 TTC7B,LOC101928909,LINC00642
SE_02_097000337 chr14:90483634-90525962 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 337 17 1414 93 5 78 0 LINC00642
SE_02_077500229 chr14:90484572-90549410 Sample_02_0775 Pancreas EndoC-BH1_SE 229 21 2186 116 7 142 194 TTC7B,LINC00642
SE_02_079800374 chr14:90486435-90525893 Sample_02_0798 Brain 1919 374 10 1329 88 5 74 0 LINC00642
SE_02_095800433 chr14:90486669-90526032 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 433 12 1330 88 5 73 0 LINC00642
SE_02_078800232 chr14:90486734-90525949 Sample_02_0788 Brain 3565 232 15 1323 88 5 73 0 LINC00642
SE_02_110500225 chr14:90486772-90600393 Sample_02_1105 Brain NBL-S 225 44 3686 136 12 234 394 TTC7B,LOC101928909,LINC00642
SE_02_138400164 chr14:90487230-90588352 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 164 23 3310 133 12 209 303 TTC7B,LINC00642
SE_02_108300387 chr14:90487360-90575700 Sample_02_1083 Macula macula 387 23 2928 126 10 179 194 TTC7B,LINC00642
SE_02_111500314 chr14:90489808-90534742 Sample_02_1115 Liver HepG2 314 16 1558 93 5 74 0 LINC00642
SE_02_101500327 chr14:90490540-90585065 Sample_02_1015 Embryo H9_ Undifferentiated 327 20 3091 126 11 197 303 TTC7B,LINC00642
SE_02_085200543 chr14:90491422-90525880 Sample_02_0852 Mammary gland MCF7L-P 543 9 1174 81 5 64 0 LINC00642
SE_02_115900544 chr14:90491422-90525895 Sample_02_1159 Mammary gland MCF7 544 9 1175 81 5 64 0 LINC00642
SE_02_115100286 chr14:90491741-90559179 Sample_02_1151 Mammary gland MCF-7_UNTR 286 26 2298 113 9 156 194 TTC7B,LINC00642
SE_02_067900307 chr14:90500051-90520783 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 307 8 750 75 5 46 0 LINC00642
SE_02_125500087 chr14:90500471-90525855 Sample_02_1255 Bladder Bladder tumor Luminal2 87 6 900 75 4 58 0 LINC00642
SE_02_143400354 chr14:90500562-90525899 Sample_02_1434 Trophoblast trophoblast stem cells 354 4 900 75 4 58 0 LINC00642
SE_02_143500512 chr14:90500737-90517537 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 512 4 606 67 2 41 0 LINC00642
SE_02_128300410 chr14:90500937-90525848 Sample_02_1283 Lung NCI-H2107_p8-15 410 8 885 74 4 58 0 LINC00642
SE_02_047701286 chr14:90501167-90525929 Sample_02_0477 Colon intestinal epithelial organoids_139a 1286 8 884 74 4 51 0 LINC00642
SE_02_098901662 chr14:90501348-90556949 Sample_02_0989 Kidney kidney cortex_WT 1662 15 1937 105 7 134 194 TTC7B,LINC00642
SE_01_010101142 chr14:90501655-90525958 Sample_01_0101 Pancreas pancreas_54y 1142 9 876 74 4 51 0 LINC00642
SE_02_049400436 chr14:90501785-90525949 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 436 5 867 74 4 51 0 LINC00642
SE_02_052400649 chr14:90501830-90525901 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 649 6 864 74 4 50 0 LINC00642
SE_02_077800182 chr14:90503170-90514623 Sample_02_0778 Mammary gland MCF7_FASR 182 2 428 61 1 26 0 LINC00642
SE_02_081800360 chr14:90506069-90568304 Sample_02_0818 Ovary High-grade serous ovarian cancer 360 15 2102 104 8 140 194 TTC7B,LINC00642
SE_02_068700380 chr14:90506208-90576305 Sample_02_0687 Lung NCI-H146_no infection 380 15 2346 108 8 152 194 TTC7B,LINC00642
SE_02_080900386 chr14:90507899-90525861 Sample_02_0809 Mammary gland T47D Serum 386 2 625 53 3 34 0 LINC00642
SE_02_070900846 chr14:90508054-90525934 Sample_02_0709 Pancreas hT85_organoid 846 8 624 52 3 34 0 LINC00642
SE_02_070300355 chr14:90508100-90526055 Sample_02_0703 Pancreas PATU8988S WT 355 2 628 52 3 34 0 LINC00642
SE_02_137100489 chr14:90508434-90525927 Sample_02_1371 Pancreas Patu899S-untreated 489 8 611 49 3 34 0 LINC00642
SE_02_105100703 chr14:90508457-90525903 Sample_02_1051 Esophagus Eso26 703 6 610 49 3 34 0 LINC00642
SE_02_117300110 chr14:90509256-90581175 Sample_02_1173 Brain GBM01 110 32 2369 87 8 166 303 TTC7B,LINC00642
SE_02_121300074 chr14:90509840-90582547 Sample_02_1213 Brain GBM31 74 25 2406 85 8 166 303 TTC7B,LINC00642
SE_02_108200263 chr14:90509882-90570395 Sample_02_1082 Retina retina 263 19 2003 77 7 139 194 TTC7B,LINC00642
SE_02_120300090 chr14:90509941-90579266 Sample_02_1203 Brain NB1 90 28 2291 80 8 166 303 TTC7B,LINC00642
SE_02_088900807 chr14:90509947-90584761 Sample_02_0889 Heart left ventricle_LV1183 807 20 2449 85 8 166 303 TTC7B,LINC00642
SE_00_005800675 chr14:90509950-90525890 Sample_00_0058 Stomach stomach 34y 675 7 563 41 2 34 0 LINC00642
SE_02_089201314 chr14:90509959-90557319 Sample_02_0892 Heart left ventricle_LV1215 1314 17 1631 72 5 117 194 TTC7B,LINC00642
SE_02_096500342 chr14:90510041-90546199 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 342 11 1286 63 3 90 194 TTC7B,LINC00642
SE_02_096600082 chr14:90510079-90585349 Sample_02_0966 Brain H3.3K27M_JN29-BS3 82 31 2461 85 8 167 303 TTC7B,LINC00642
SE_02_097700213 chr14:90510130-90574956 Sample_02_0977 Brain 2089_H3.3K27WT 213 23 2154 79 7 148 194 TTC7B,LINC00642
SE_02_097900139 chr14:90510149-90569872 Sample_02_0979 Brain JN14-BS1_H3.3K27M 139 17 1980 76 7 139 194 TTC7B,LINC00642
SE_02_129000517 chr14:90510294-90525933 Sample_02_1290 Lung NCI-H69_p8-15 517 4 555 40 2 34 0 LINC00642
SE_02_100800284 chr14:90510324-90525825 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 284 9 550 39 2 34 0 LINC00642
SE_02_144300264 chr14:90510337-90545916 Sample_02_1443 Lung H69M 264 10 1270 60 3 86 194 TTC7B,LINC00642
SE_02_096900717 chr14:90510360-90525832 Sample_02_0969 Brain H3.3K27M_PL637 717 7 546 38 2 34 0 LINC00642
SE_02_119300569 chr14:90510447-90570348 Sample_02_1193 Brain GBM27 569 15 1982 72 7 139 194 TTC7B,LINC00642
SE_02_119500216 chr14:90510455-90578772 Sample_02_1195 Brain GBM29 216 24 2256 75 8 166 303 TTC7B,LINC00642
SE_02_111300470 chr14:90510526-90534574 Sample_02_1113 Bone U2OS 470 10 864 46 2 44 0 LINC00642
SE_02_120500139 chr14:90510593-90579091 Sample_02_1205 Brain NB3 139 38 2262 75 8 166 303 TTC7B,LINC00642
SE_02_120400106 chr14:90510636-90581316 Sample_02_1204 Brain NB2 106 26 2335 78 8 166 303 TTC7B,LINC00642
SE_02_142000183 chr14:90510677-90537367 Sample_02_1420 Brain DIPG007 183 8 967 51 3 44 0 LINC00642
SE_02_098000260 chr14:90510691-90525868 Sample_02_0980 Brain BT245 260 8 535 36 2 34 0 LINC00642
SE_02_118700369 chr14:90510710-90570444 Sample_02_1187 Brain GBM16 369 20 1976 71 7 139 194 TTC7B,LINC00642
SE_02_101300577 chr14:90510736-90523885 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 577 12 475 35 2 30 0 LINC00642
SE_02_100600258 chr14:90510838-90523222 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 258 5 451 34 2 30 0 LINC00642
SE_02_049300506 chr14:90511218-90525915 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 506 6 512 30 2 34 0 LINC00642
SE_02_101400119 chr14:90511365-90524015 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 119 10 449 29 2 30 0 LINC00642
SE_02_052500778 chr14:90511417-90525850 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 778 4 501 30 2 34 0 LINC00642
SE_02_119600229 chr14:90511435-90579183 Sample_02_1196 Brain GBM32 229 34 2230 69 8 166 303 TTC7B,LINC00642
SE_02_120200667 chr14:90511475-90577629 Sample_02_1202 Brain GBM38 667 14 2181 68 8 155 194 TTC7B,LINC00642
SE_02_049500494 chr14:90511497-90525871 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 494 4 500 30 2 34 0 LINC00642
SE_02_129200298 chr14:90511519-90525838 Sample_02_1292 Lung JHU-LX110-SCLC PDX 298 4 497 30 2 34 0 LINC00642
SE_02_101100143 chr14:90511547-90523204 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 143 6 415 29 2 30 0 LINC00642
SE_02_119400287 chr14:90511884-90579174 Sample_02_1194 Brain GBM28 287 25 2215 65 8 166 303 TTC7B,LINC00642
SE_02_096100176 chr14:90511913-90525761 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 176 5 484 26 2 34 0 LINC00642
SE_02_121100237 chr14:90511922-90578436 Sample_02_1211 Brain GBM21 237 13 2190 64 8 163 287 TTC7B,LINC00642
SE_02_129300037 chr14:90511924-90522628 Sample_02_1293 Lung JHU-LX22-SCLC PDX 37 6 378 25 2 29 0 LINC00642
SE_02_093200553 chr14:90511935-90557272 Sample_02_0932 Embryo H9 WT_1 553 10 1554 57 5 117 194 TTC7B,LINC00642
SE_00_004600658 chr14:90511970-90556985 Sample_00_0046 Heart right ventricle_34y 658 19 1545 57 5 116 194 TTC7B,LINC00642
SE_02_100900368 chr14:90512060-90523270 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 368 5 401 23 2 29 0 LINC00642
SE_02_093700917 chr14:90512068-90526038 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 917 6 489 24 2 33 0 LINC00642
SE_02_100100073 chr14:90512083-90522973 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 73 5 384 20 2 28 0 LINC00642
SE_02_053300575 chr14:90513468-90570265 Sample_02_0533 Blood vessel Circle of Willis_54y 575 12 1859 47 7 131 194 TTC7B,LINC00642
SE_02_044100652 chr14:90517318-90546550 Sample_02_0441 Bone M112 652 8 1022 29 3 75 194 TTC7B,LINC00642
SE_02_043900835 chr14:90522215-90546325 Sample_02_0439 Bone Hu09 835 7 854 23 1 61 194 TTC7B,LINC00642
SE_02_100900073 chr14:90541440-90579327 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 73 25 1164 17 5 89 166 TTC7B,LOC101928909,LINC00642
SE_02_128300212 chr14:90544187-90580984 Sample_02_1283 Lung NCI-H2107_p8-15 212 14 1120 20 5 80 109 TTC7B,LOC101928909,LINC00642
Genomic distribution of SEs associated with LINC00642
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00642

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)