SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000232401
Gene: LINC00112 Gene type: lncRNA
Strand: + External links:
Genomic region: chr21:41715806-41717975 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_125500112 chr21:41702191-41730660 Sample_02_1255 Bladder Bladder tumor Luminal2 112 9 1090 76 6 15 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_070900245 chr21:41703873-41730815 Sample_02_0709 Pancreas hT85_organoid 245 8 1033 74 6 15 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_105400613 chr21:41703902-41728802 Sample_02_1054 Esophagus SKGT4 613 8 954 63 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_072400132 chr21:41704693-41728549 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 132 5 913 62 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_047500770 chr21:41704711-41727983 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 770 5 885 58 5 8 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_103200739 chr21:41705032-41733356 Sample_02_1032 Head and neck SCC1 JQ1 739 11 1040 80 6 26 957 LINC00112,LINC00479,RIPK4,MIR6814,LINC00111
SE_02_125400926 chr21:41725619-41735071 Sample_02_1254 Bladder Bladder tumor Basal1 926 3 329 39 3 23 0 RIPK4,MIR6814,LINC00111,LINC00479,LINC00112
Genomic distribution of SEs associated with LINC00112
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00112

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)