SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000161896
Gene: IP6K3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:33721662-33746905 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_036700034 chr6:33691585-33771928 Sample_02_0367 Skeletal muscle NS129 34 8 2423 413 49 276 2675 C6ORF125,ITPR3,IP6K3,LEMD2,MLN
SE_02_036800024 chr6:33691864-33772293 Sample_02_0368 Skeletal muscle NS134 24 10 2427 412 51 268 2709 C6ORF125,ITPR3,IP6K3,LEMD2,MLN
SE_02_085300152 chr6:33704201-33782965 Sample_02_0853 Mammary gland MCF7L-TamR 152 20 2356 408 42 268 1959 LEMD2,IP6K3,UQCC2,MLN,MIR3934
SE_02_000200173 chr6:33705206-33763470 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 173 7 1735 286 30 199 1239 C6ORF125,IP6K3,MLN,LEMD2
SE_00_003200019 chr6:33709518-33762882 Sample_00_0032 Psoas muscle psoas-muscle_30y 19 8 1585 258 24 181 1226 C6ORF125,IP6K3,MLN,LEMD2
SE_02_067300182 chr6:33713150-33745662 Sample_02_0673 Prostate LNCAP_FA 182 6 938 130 15 131 826 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_129900340 chr6:33713291-33745891 Sample_02_1299 Liver liver 340 15 938 131 15 131 826 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_140700309 chr6:33713334-33745650 Sample_02_1407 Prostate LNCaP_R1881 4h 309 7 934 130 15 131 826 IP6K3,LEMD2,UQCC2,MIR3934
SE_01_009400092 chr6:33713755-33772075 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 92 8 1730 295 26 177 1187 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_01_009700027 chr6:33714051-33772062 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 27 6 1722 294 26 177 1185 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_066800054 chr6:33714070-33745049 Sample_02_0668 Prostate prostate cancer FA 54 17 903 122 15 128 826 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_103100372 chr6:33715006-33769130 Sample_02_1031 Head and neck SCC1 contol 372 14 1613 275 24 168 983 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_005600356 chr6:33715822-33782559 Sample_02_0056 Mammary gland HMEC 356 10 1987 343 34 226 1703 IP6K3,LEMD2,C6ORF125,MLN
SE_01_006800088 chr6:33715838-33759077 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 88 5 1279 203 21 157 983 IP6K3,C6ORF125,MLN,LEMD2
SE_02_074901032 chr6:33715913-33745645 Sample_02_0749 Mammary gland HCC1599_GSI 1032 7 872 118 14 131 826 IP6K3,LEMD2,UQCC2,MIR3934
SE_01_008700476 chr6:33715978-33772956 Sample_01_0087 Thyroid gland thyroid-gland 476 8 1705 291 28 182 1361 IP6K3,LEMD2,C6ORF125,MLN
SE_01_007600105 chr6:33716904-33753211 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 105 1 1077 169 16 143 983 IP6K3,C6ORF125,LEMD2
SE_01_010500231 chr6:33717777-33772295 Sample_01_0105 Thyroid gland thyroid gland_54y 231 19 1643 282 27 160 1236 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_047500870 chr6:33719250-33762193 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 870 10 1289 206 22 136 983 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_091700691 chr6:33722546-33747516 Sample_02_0917 Heart left ventricle_DCM_LV1433 691 11 768 116 12 101 849 IP6K3,LEMD2,UQCC2,MIR3934
SE_00_002100230 chr6:33726097-33748057 Sample_00_0021 Lung lung_3y 230 4 671 112 10 70 645 IP6K3,C6ORF125,LEMD2
SE_00_005700196 chr6:33726681-33745900 Sample_00_0057 Heart right ventricle 3y 196 28 591 85 10 61 458 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_089300462 chr6:33727061-33747575 Sample_02_0893 Heart left ventricle_LV1226 462 6 628 106 10 67 522 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_089500778 chr6:33727371-33747039 Sample_02_0895 Heart left ventricle_LV1259 778 10 605 97 9 66 486 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_089400462 chr6:33727452-33747550 Sample_02_0894 Heart left ventricle_LV1248 462 7 620 105 9 66 520 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_091801037 chr6:33727533-33747068 Sample_02_0918 Heart left ventricle_DCM_LV1437 1037 11 604 97 9 64 495 IP6K3,LEMD2,UQCC2,MIR3934
SE_00_004600378 chr6:33727547-33747732 Sample_00_0046 Heart right ventricle_34y 378 13 623 106 9 64 520 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_005200209 chr6:33727981-33735828 Sample_02_0052 Mammary gland MCF-7_E2 209 3 256 37 5 24 248 IP6K3,C6ORF125
SE_02_036600315 chr6:33729611-33752805 Sample_02_0366 Skeletal muscle NCI0082 315 3 699 127 10 70 408 IP6K3,C6ORF125,LEMD2
SE_02_021600284 chr6:33730530-33771991 Sample_02_0216 Skin NHEK_scramble 284 10 1248 238 19 94 589 IP6K3,LEMD2,C6ORF125,MLN
SE_02_087400539 chr6:33730618-33751234 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 539 4 623 119 10 68 408 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_001900494 chr6:33730652-33772261 Sample_02_0019 Embryo Neural crest cells 494 13 1253 240 21 94 649 IP6K3,LEMD2,C6ORF125,MLN
SE_02_039601904 chr6:33731498-33784477 Sample_02_0396 Skin NHEK-D 1904 19 1574 304 29 139 1174 IP6K3,LEMD2,C6ORF125,MLN
SE_01_011500843 chr6:33732205-33751913 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 843 6 583 110 8 58 408 IP6K3,LEMD2,UQCC2,MIR3934
SE_02_055300361 chr6:33732400-33771659 Sample_02_0553 Other HSSY2 shCt 361 18 1173 223 17 84 523 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_086900218 chr6:33732459-33789792 Sample_02_0869 Fibroblast VH10_NO_UV 218 13 1690 318 28 152 1568 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_143200788 chr6:33732467-33782981 Sample_02_1432 Bone A673 STAG2 WT 788 17 1502 283 26 133 1128 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_087200217 chr6:33732711-33769611 Sample_02_0872 Colon HCT116_siCtrl-5FU 217 8 1105 211 16 75 408 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_138400290 chr6:33733314-33782803 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 290 15 1474 280 26 133 1128 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_143300929 chr6:33733315-33783018 Sample_02_1433 Bone A673 STAG2 null 929 14 1478 280 26 133 1128 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_103602438 chr6:33733914-33775587 Sample_02_1036 Mammary gland HCC70_XY018 2438 14 1248 247 21 88 787 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_103502051 chr6:33733917-33772094 Sample_02_1035 Mammary gland HCC70_Vehicle 2051 16 1145 220 17 83 614 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_116800197 chr6:33734717-33784825 Sample_02_1168 Biliary H69_TGF Vehicle_2 197 21 1501 288 27 132 1187 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_00_003300394 chr6:33736653-33752266 Sample_00_0033 Psoas muscle psoas-muscle_3y 394 2 462 94 6 51 260 IP6K3,C6ORF125,LEMD2
SE_02_117300842 chr6:33736989-33785029 Sample_02_1173 Brain GBM01 842 14 1434 279 25 126 1039 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_076200674 chr6:33737672-33789887 Sample_02_0762 Podocyte podocyte_CTL 674 14 1536 298 25 141 1420 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_116600209 chr6:33738236-33789211 Sample_02_1166 Biliary H69_TGF beta_16h_1 209 21 1489 290 25 126 1392 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_01_008200646 chr6:33738600-33789618 Sample_01_0082 Right lobe of liver right-lobe-of-liver 646 7 1491 287 25 135 1420 IP6K3,LEMD2,C6ORF125,MLN
SE_02_061500456 chr6:33738738-33789696 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 456 8 1487 286 24 135 1420 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_087300314 chr6:33738833-33765806 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 314 6 799 164 12 45 260 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_116900317 chr6:33739290-33784848 Sample_02_1169 Biliary H69_TGF beta_16h_2 317 17 1354 264 23 114 965 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_021100759 chr6:33739392-33772855 Sample_02_0211 Lung MRC-5_NFD_1DPT 759 7 1008 199 16 69 531 IP6K3,LEMD2,C6ORF125,MLN
SE_02_061100566 chr6:33739558-33772122 Sample_02_0611 Liposarcoma DDLPS_T1 566 13 973 193 13 64 368 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_01_008401381 chr6:33739644-33789906 Sample_01_0084 Spleen spleen 1381 6 1479 286 24 132 1317 IP6K3,LEMD2,C6ORF125,MLN
SE_02_116700219 chr6:33739654-33783213 Sample_02_1167 Biliary H69_TGF Vehicle_1 219 15 1294 253 22 113 877 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_060300364 chr6:33739896-33762297 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 364 7 658 126 10 44 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_053000554 chr6:33740030-33762309 Sample_02_0530 Mammary gland MCF10A 554 9 653 126 10 44 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_088600608 chr6:33740154-33789846 Sample_02_0886 Skin foreskin_ p63KLF4 608 12 1461 285 24 132 1317 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_046200046 chr6:33740270-33772745 Sample_02_0462 Lung NCI-H2171 cells 46 23 980 195 16 68 500 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_072600246 chr6:33740416-33782476 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 246 9 1258 246 21 113 877 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_072500082 chr6:33740469-33762284 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 82 7 645 122 9 44 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_01_009200472 chr6:33742157-33789610 Sample_01_0092 Vagina vagina 472 7 1389 273 23 131 1317 IP6K3,LEMD2,C6ORF125,MLN
SE_02_114200140 chr6:33742214-33772330 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 140 12 900 183 14 63 424 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_153900759 chr6:33742236-33762360 Sample_02_1539 Nasopharyngeal C666-1 759 15 592 116 9 43 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_076300154 chr6:33742315-33790126 Sample_02_0763 Podocyte podocyte_DEX 154 8 1399 271 23 133 1317 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_041901013 chr6:33742360-33752100 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 1013 7 282 60 3 37 157 IP6K3,C6ORF125,LEMD2
SE_02_128700040 chr6:33742450-33782904 Sample_02_1287 Lung NCI-H510_p8-15 40 10 1199 236 21 112 877 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_060000608 chr6:33743559-33762280 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 608 4 554 107 9 33 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_060400377 chr6:33743590-33762319 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 377 4 556 108 9 33 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_059500176 chr6:33743611-33762284 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 176 5 553 107 9 33 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_129200260 chr6:33743951-33756159 Sample_02_1292 Lung JHU-LX110-SCLC PDX 260 5 370 77 4 30 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934
SE_02_033000654 chr6:33744120-33782791 Sample_02_0330 Endoderm MHG 654 7 1157 230 20 99 877 IP6K3,LEMD2,C6ORF125,MLN
SE_02_043600508 chr6:33744528-33782320 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 508 7 1137 230 20 99 877 IP6K3,LEMD2,C6ORF125,MLN
SE_02_148300470 chr6:33744690-33773501 Sample_02_1483 Bone RD-ES 470 7 870 180 14 55 536 IP6K3,LEMD2,MLN,UQCC2,MIR3934
SE_02_068100332 chr6:33744740-33761378 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 332 4 503 101 8 29 157 IP6K3,MLN,LEMD2,UQCC2,MIR3934,MNF1
SE_02_068000151 chr6:33744813-33778033 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 151 7 1009 209 16 67 654 IP6K3,LEMD2,MLN,UQCC2,MIR3934,MNF1
SE_02_148100634 chr6:33752495-33773858 Sample_02_1481 Bone MIC 634 11 646 123 12 31 379 LEMD2,MLN,IP6K3,UQCC2
Genomic distribution of SEs associated with IP6K3
Genome Browser

The strength of the tissue affected by the gene

Expression of IP6K3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)