SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000174498
Gene: IGDCC3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:65327127-65378002 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_031200105 chr15:65284535-65387248 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 105 11 3049 195 1 510 3087 IGDCC3,IGDCC4,PARP16
SE_02_115100137 chr15:65298151-65394702 Sample_02_1151 Mammary gland MCF-7_UNTR 137 36 2816 168 1 535 3669 IGDCC3,RNU5B-1,IGDCC4,PARP16,RNU5A-1
SE_02_110700282 chr15:65301028-65386985 Sample_02_1107 Brain SK-N-AS 282 32 2386 141 1 486 2888 IGDCC3,RNU5B-1,IGDCC4,PARP16,RNU5A-1
SE_02_077500051 chr15:65313529-65448560 Sample_02_0775 Pancreas EndoC-BH1_SE 51 53 3678 249 13 680 4915 DPP8,IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_077600503 chr15:65319207-65385691 Sample_02_0776 Pancreas EndoC-BH1 503 12 1732 93 1 439 2661 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_025300421 chr15:65321047-65345146 Sample_02_0253 Brain BE2C_DMSO 421 4 647 39 0 205 1585 IGDCC3,PARP16
SE_02_110100156 chr15:65321328-65426489 Sample_02_1101 Brain KELLY 156 31 2853 151 7 634 4798 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_110600196 chr15:65321405-65386980 Sample_02_1106 Brain NGP 196 33 1700 87 1 455 2888 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_096200242 chr15:65321868-65386668 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 242 15 1682 86 1 455 2861 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_154400216 chr15:65321970-65385692 Sample_02_1544 Gastrointestinal Stromal GIST-882 216 34 1650 86 1 439 2662 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_030400642 chr15:65322104-65345459 Sample_02_0304 Neuroblastoma N206 642 4 627 37 0 205 1585 IGDCC3,PARP16
SE_02_097000211 chr15:65322532-65386595 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 211 16 1661 85 1 453 2846 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_097600266 chr15:65322798-65386368 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 266 16 1648 84 1 447 2792 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_033000117 chr15:65325794-65385771 Sample_02_0330 Endoderm MHG 117 14 1547 79 1 439 2680 IGDCC3,IGDCC4,PARP16
SE_02_152700180 chr15:65325854-65372506 Sample_02_1527 Embryo naive embryonic stem cell 180 14 1188 73 1 328 1689 IGDCC3,RNU5B-1,PARP16,RNU5A-1
SE_02_155700070 chr15:65325935-65385333 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 70 18 1529 79 1 438 2654 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_074400178 chr15:65325962-65372217 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 178 15 1178 73 1 326 1689 IGDCC3,RNU5B-1,PARP16,RNU5A-1
SE_02_101700554 chr15:65326029-65386425 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 554 12 1559 78 1 447 2801 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_00_001000660 chr15:65333020-65339131 Sample_00_0010 Embryo endodermal-cell 660 1 170 6 0 108 473 IGDCC3,PARP16
SE_02_068100101 chr15:65333086-65369680 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 101 11 891 53 1 241 568 IGDCC3,RNU5B-1,PARP16,RNU5A-1,IGDCC4
SE_02_096100093 chr15:65334070-65385672 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 93 9 1288 59 1 332 1411 IGDCC3,IGDCC4,RNU5B-1,PARP16,RNU5A-1
SE_02_101600856 chr15:65334076-65370037 Sample_02_1016 Embryo H9_Mesendoderm_24h 856 7 873 51 1 219 441 IGDCC3,RNU5B-1,PARP16,RNU5A-1
SE_02_055600217 chr15:65339147-65369589 Sample_02_0556 iPSCs BOFS hiPSC cl1 217 6 725 47 1 133 104 IGDCC3,RNU5B-1,RNU5A-1
SE_00_005300309 chr15:65340499-65370066 Sample_00_0053 Embryo trophoblast cell originated from H1 309 9 711 46 1 129 104 IGDCC3,RNU5B-1,RNU5A-1
SE_02_074501368 chr15:65349001-65369432 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1368 6 482 36 1 104 104 IGDCC3,RNU5B-1
SE_02_093200099 chr15:65353467-65386547 Sample_02_0932 Embryo H9 WT_1 99 9 829 33 1 225 1247 IGDCC3,IGDCC4,RNU5B-1
SE_01_002100563 chr15:65354064-65385776 Sample_01_0021 Skin bipolar-neuron 563 4 798 32 1 217 1095 IGDCC3,IGDCC4
SE_02_093400169 chr15:65354152-65370111 Sample_02_0934 Embryo H7-WT 169 3 378 24 1 104 104 IGDCC3,RNU5B-1
SE_02_093300248 chr15:65354225-65369426 Sample_02_0933 Embryo H7 UTXKO 248 3 356 23 1 104 104 IGDCC3,RNU5B-1
SE_02_003900165 chr15:65354240-65386951 Sample_02_0039 Embryo AFG 165 7 822 32 1 233 1303 IGDCC3,IGDCC4
SE_02_093100201 chr15:65354543-65386401 Sample_02_0931 Embryo H9 UTXKO 201 6 802 32 1 225 1213 IGDCC3,IGDCC4,RNU5B-1
SE_02_083800306 chr15:65354626-65369984 Sample_02_0838 Embryo hNPCs_WT 306 3 364 24 1 104 104 IGDCC3,RNU5B-1,IGDCC4,PARP16
SE_02_004600254 chr15:65354685-65385738 Sample_02_0046 Embryo endodermal CyT49_ES_D10 254 8 780 32 1 217 1090 IGDCC3,IGDCC4
SE_02_027900126 chr15:65354794-65375516 Sample_02_0279 Retina RB 126 8 516 26 1 125 220 IGDCC3,IGDCC4
SE_02_119301325 chr15:65354811-65386137 Sample_02_1193 Brain GBM27 1325 7 790 31 1 224 1190 IGDCC3,IGDCC4
SE_02_052400461 chr15:65354860-65370267 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 461 4 363 23 1 103 104 IGDCC3
SE_02_052500372 chr15:65354896-65370014 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 372 5 355 23 1 103 104 IGDCC3
SE_02_074300216 chr15:65354904-65386134 Sample_02_0743 Embryo ES derived mesoderm_day2 216 11 788 31 1 224 1190 IGDCC3,IGDCC4
SE_02_096900549 chr15:65354954-65386264 Sample_02_0969 Brain H3.3K27M_PL637 549 9 789 31 1 224 1207 IGDCC3,IGDCC4
SE_02_049400782 chr15:65355039-65370196 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 782 4 354 23 1 103 104 IGDCC3
SE_02_101300572 chr15:65355049-65385699 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 572 7 764 31 1 216 1081 IGDCC3,IGDCC4
SE_02_049300688 chr15:65355093-65370272 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 688 2 356 23 1 103 104 IGDCC3
SE_02_049500906 chr15:65355106-65369583 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 906 5 335 23 1 103 104 IGDCC3
SE_02_067800450 chr15:65355349-65368674 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 450 8 309 22 1 87 104 IGDCC3,IGDCC4,PARP16
SE_02_006400971 chr15:65355622-65378891 Sample_02_0064 Embryo DN-Early_G1 971 4 573 29 1 135 461 IGDCC3,IGDCC4
SE_02_067900430 chr15:65355651-65369562 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 430 7 329 23 1 88 104 IGDCC3,IGDCC4,PARP16
SE_02_077800151 chr15:65358823-65385704 Sample_02_0778 Mammary gland MCF7_FASR 151 6 701 28 1 176 979 IGDCC3,IGDCC4,PARP16
SE_02_074200465 chr15:65361069-65372819 Sample_02_0742 Embryo ESCs_day0 465 10 304 15 1 55 0 IGDCC3
SE_02_003600624 chr15:65361424-65379124 Sample_02_0036 Embryo H7 624 5 459 16 1 100 357 IGDCC3,IGDCC4
SE_02_104601541 chr15:65361746-65415535 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1541 16 1514 55 6 330 2897 IGDCC3,IGDCC4
SE_02_001700454 chr15:65363186-65378775 Sample_02_0017 Embryo H9_ESC 454 4 408 14 0 100 357 IGDCC3,IGDCC4
SE_02_004900134 chr15:65363680-65379330 Sample_02_0049 Embryo endodermal CyT49_GTtoH 134 2 404 14 0 99 357 IGDCC3,IGDCC4
SE_02_075400707 chr15:65363921-65370234 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 707 1 168 8 0 41 0 IGDCC3
SE_02_004400319 chr15:65364167-65378939 Sample_02_0044 Embryo endodermal CyT49_ES_D5 319 4 391 14 0 88 357 IGDCC3,IGDCC4
SE_02_004800292 chr15:65364226-65401683 Sample_02_0048 Embryo endodermal CyT49_HE 292 6 1060 27 1 263 2567 IGDCC3,IGDCC4
SE_02_004500248 chr15:65364302-65385832 Sample_02_0045 Embryo endodermal CyT49_ES_D7 248 6 580 15 0 153 1002 IGDCC3,IGDCC4
SE_00_001000813 chr15:65367370-65370408 Sample_00_0010 Embryo endodermal-cell 813 1 89 3 0 31 0 IGDCC3
SE_02_025300409 chr15:65367557-65387061 Sample_02_0253 Brain BE2C_DMSO 409 3 525 10 0 160 1199 IGDCC3,IGDCC4
SE_02_155600626 chr15:65368491-65385702 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 626 5 459 9 0 123 979 IGDCC3,IGDCC4
Genomic distribution of SEs associated with IGDCC3
Genome Browser

The strength of the tissue affected by the gene

Expression of IGDCC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)