SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000051128
Gene: HOMER3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:18929201-18941261 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122300098 chr19:18935250-18951659 Sample_02_1223 Bone marrow KMS28BM 98 4 412 20 1 41 763 HOMER3,GDF1,CERS1,DDX49,COPE
SE_02_122700114 chr19:18938029-18949527 Sample_02_1227 Bone marrow U266 114 1 279 11 1 41 763 HOMER3,GDF1,CERS1,DDX49,COPE
SE_02_039601372 chr19:18938073-18942301 Sample_02_0396 Skin NHEK-D 1372 1 99 8 1 27 763 HOMER3,DDX49,COPE,GDF1
SE_02_121900449 chr19:18942457-18951828 Sample_02_1219 Bone marrow H929 449 5 245 8 0 14 0 GDF1,HOMER3,CERS1,DDX49,COPE
SE_02_122100186 chr19:18943182-18954138 Sample_02_1221 Bone marrow KMS11 186 5 302 9 0 14 0 GDF1,HOMER3,CERS1,DDX49,COPE
SE_02_113200618 chr19:18944738-18986837 Sample_02_1132 Pancreas KLM1 wt 618 16 1250 106 0 17 0 GDF1,HOMER3,SUGP2,ARMC6,CERS1,DDX49,COPE
SE_02_153900830 chr19:18949758-18986910 Sample_02_1539 Nasopharyngeal C666-1 830 12 1127 105 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_093001581 chr19:18950298-18973071 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1581 16 695 51 0 0 0 HOMER3,DDX49,COPE
SE_02_103200628 chr19:18952293-18983971 Sample_02_1032 Head and neck SCC1 JQ1 628 9 984 93 0 0 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_084100350 chr19:18959606-18988594 Sample_02_0841 Blood THP-1_untr 350 7 886 96 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_033400131 chr19:18962143-18988693 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 131 2 809 93 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033200131 chr19:18963065-18988778 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 131 3 792 93 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_133100115 chr19:18963225-18989887 Sample_02_1331 Blood Molm13_CTRL 115 9 831 104 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_033300085 chr19:18963264-18987712 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 85 3 761 89 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033500087 chr19:18963316-18988646 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 87 3 778 91 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_109800179 chr19:18964972-18986771 Sample_02_1098 Blood THP1_DMSO_noPMA 179 7 669 83 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_068200051 chr19:18965351-18986903 Sample_02_0682 Blood Kasumi-1 51 9 660 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE,TMEM161A
SE_02_046000132 chr19:18965409-18986850 Sample_02_0460 Blood ME-1_I-10-49_6h 132 8 657 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_133000793 chr19:18965822-18988507 Sample_02_1330 Blood AMU-AML1 793 11 690 86 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_045900371 chr19:18965860-18986894 Sample_02_0459 Blood ME-1_DMSO_6h 371 4 640 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_134000392 chr19:18965894-18986754 Sample_02_1340 Blood acute myeloid leukemia 392 4 634 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057800279 chr19:18965925-18986820 Sample_02_0578 Blood MOLM-13_sgSIK3e4 279 9 637 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_014400351 chr19:18965988-18986646 Sample_02_0144 Peripheral blood MV411_DMSO 351 2 631 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033100310 chr19:18966014-18986234 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 310 4 617 81 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_135000570 chr19:18966034-18986301 Sample_02_1350 Leukophereses leukophereses_p456 570 3 621 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_054800142 chr19:18966038-18986809 Sample_02_0548 Blood THP-1_24h with EtOH 142 6 634 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_025600753 chr19:18966068-18987051 Sample_02_0256 Peripheral blood MV411 753 6 637 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_00_000600500 chr19:18966081-18986389 Sample_00_0006 Blood CD14-positive-monocyte 500 2 622 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_034600104 chr19:18966117-18986053 Sample_02_0346 Blood AML10 104 4 609 80 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_058100378 chr19:18966159-18986341 Sample_02_0581 Blood MOLM13_empty_HG 378 3 617 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057400355 chr19:18966185-18986853 Sample_02_0574 Blood MOLM-13_sgNeg2 355 7 629 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057500403 chr19:18966256-18985890 Sample_02_0575 Blood MOLM13_sgLKB1e2 403 4 604 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099300185 chr19:18966355-18985710 Sample_02_0993 Blood MOLM-13_empty 185 4 596 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_034500334 chr19:18966359-18985986 Sample_02_0345 Blood AML8 334 5 603 79 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_025500701 chr19:18966365-18986030 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 701 4 604 80 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_134800462 chr19:18966381-18986160 Sample_02_1348 Leukophereses leukophereses_p408 462 3 608 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_058200519 chr19:18966394-18986057 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 519 2 604 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_134200089 chr19:18966403-18985872 Sample_02_1342 Blood NB4 89 8 598 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099500204 chr19:18966424-18985941 Sample_02_0995 Blood MOLM-13_empty vector 204 5 601 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057700419 chr19:18966442-18985933 Sample_02_0577 Blood MOLM13_empty 419 2 599 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099400277 chr19:18966447-18985923 Sample_02_0994 Blood MOLM13_SIK3TQ 277 5 598 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_146001096 chr19:18966471-18995790 Sample_02_1460 Blood Mutz-3 1096 7 893 120 0 18 616 SUGP2,HOMER3,ARMC6,DDX49,COPE
SE_02_058500723 chr19:18966498-18999559 Sample_02_0585 Umbilical vein HUVEC 0hour 723 7 1010 132 0 18 616 SUGP2,HOMER3,ARMC6,DDX49,COPE
SE_02_050100273 chr19:18966506-18986635 Sample_02_0501 Blood HL-60_CTRL 273 4 617 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_00_005500973 chr19:18966508-18986737 Sample_00_0055 Spleen spleen 34y 973 11 618 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE,GDF1,CERS1
SE_02_046100398 chr19:18966549-18986159 Sample_02_0461 Blood MV-4-11-B cells 398 6 601 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_092600195 chr19:18966597-18986172 Sample_02_0926 Blood NB4_1 195 19 600 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_134700536 chr19:18966601-18975583 Sample_02_1347 Leukophereses leukophereses_p401 536 9 283 41 0 0 0 HOMER3,DDX49,COPE
SE_02_083100889 chr19:18967234-18999050 Sample_02_0831 Umblical vein HUVECs_TNF0min 889 10 971 126 0 18 616 SUGP2,HOMER3,ARMC6,DDX49,COPE
SE_02_062000883 chr19:18967254-18973258 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 883 7 193 25 0 0 0 HOMER3,DDX49,COPE
SE_02_046400204 chr19:18967564-18973258 Sample_02_0464 Bone marrow MOLM-13 204 11 185 25 0 0 0 HOMER3,DDX49,COPE
Genomic distribution of SEs associated with HOMER3
Genome Browser

The strength of the tissue affected by the gene

Expression of HOMER3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)