SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID:
Gene: HIST4H4 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_117200248 chr12:14704094-14716844 Sample_02_1172 Embryo H9 WT 248 1 354 59 0 2 0 GUCY2C,HIST4H4
SE_02_116000444 chr12:14705044-14714187 Sample_02_1160 Embryo H1_shLuc 444 5 244 43 0 0 0 GUCY2C,HIST4H4
SE_02_086000614 chr12:14705072-14714523 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 614 8 252 44 0 0 0 GUCY2C,HIST4H4
SE_02_067600261 chr12:14705089-14715401 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 261 10 274 45 0 0 0 GUCY2C,HIST4H4
SE_02_055900852 chr12:14705186-14714615 Sample_02_0559 iPSCs FX52 iPSCs dC-T 852 6 250 44 0 0 0 GUCY2C,HIST4H4
SE_02_067700262 chr12:14705243-14715044 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 262 13 259 44 0 0 0 GUCY2C,HIST4H4
SE_02_086100487 chr12:14705876-14715071 Sample_02_0861 iPSCs SAH_WT 487 11 238 39 0 0 0 GUCY2C,HIST4H4
SE_02_067900418 chr12:14706271-14715554 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 418 11 241 37 0 0 0 GUCY2C,HIST4H4
SE_02_067800281 chr12:14706738-14716790 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 281 9 268 44 0 0 0 GUCY2C,HIST4H4
SE_02_056000586 chr12:14706849-14714399 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 586 6 193 33 0 0 0 GUCY2C,HIST4H4
SE_00_001200711 chr12:14710541-14715391 Sample_00_0012 Embryo H1-hESC 711 2 116 23 0 0 0 GUCY2C,HIST4H4
SE_00_003600284 chr12:14741222-14776943 Sample_00_0036 Small intestine small-intestine_108days 284 6 919 123 1 31 737 H2AFJ,HIST4H4,WBP11,C12ORF60,C12ORF69,GUCY2C
SE_02_104701834 chr12:14751097-14771218 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1834 4 537 78 1 9 334 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_00_002000314 chr12:14751309-14776982 Sample_00_0020 Large intestine large-intestine_108d 314 5 671 94 1 31 739 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_104301534 chr12:14752941-14790613 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1534 8 943 121 1 63 1126 WBP11,H2AFJ,HIST4H4,C12ORF60,SMCO3
SE_01_003700381 chr12:14755611-14776721 Sample_01_0037 Liver hepatocyte 381 2 548 76 1 31 713 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_01_007900561 chr12:14756276-14776795 Sample_01_0079 Peyers patch Peyers-patch 561 4 536 77 1 31 720 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_044500761 chr12:14756329-14777126 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 761 3 544 78 1 31 762 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_122400732 chr12:14760788-14784458 Sample_02_1224 Bone marrow normal plasma cell 732 6 594 78 1 31 849 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_00_000300685 chr12:14761682-14776124 Sample_00_0003 Adrenal gland adrenal-gland_97d 685 3 373 47 1 31 652 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_098900976 chr12:14762564-14776440 Sample_02_0989 Kidney kidney cortex_WT 976 6 359 39 1 31 684 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_01_010100302 chr12:14765508-14777878 Sample_01_0101 Pancreas pancreas_54y 302 5 334 34 1 31 828 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11,ART4
SE_01_008500518 chr12:14765589-14778423 Sample_01_0085 Stomach stomach 518 2 348 36 1 31 849 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_156701249 chr12:14765713-14772522 Sample_02_1567 iPSCs CiPSC 1249 3 189 20 1 9 347 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_02_157001002 chr12:14765754-14772593 Sample_02_1570 iPSCs EiPSC 1002 3 189 20 1 9 347 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_01_010300260 chr12:14766073-14777769 Sample_01_0103 Pancreas pancreas_37y 260 6 318 33 1 31 821 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11,ART4
SE_02_113100315 chr12:14766129-14777834 Sample_02_1131 Pancreas T3M4 wt 315 5 318 33 1 31 824 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_157201053 chr12:14766152-14774165 Sample_02_1572 iPSCs FiPSC 1053 2 218 26 1 10 347 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_00_005800626 chr12:14766216-14771191 Sample_00_0058 Stomach stomach 34y 626 2 155 14 1 6 329 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_02_094800876 chr12:14766230-14778070 Sample_02_0948 Pharyng Detroit562 876 5 327 34 1 31 834 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_021200112 chr12:14766795-14771866 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 112 1 161 18 1 9 347 HIST4H4,C12ORF69,WBP11,H2AFJ,C12ORF60
SE_02_011500211 chr12:14766957-14778157 Sample_02_0115 Mammary gland MCF-7 211 2 316 33 0 31 845 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_000200379 chr12:14767095-14778218 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 379 1 313 31 0 31 849 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_000500639 chr12:14767258-14775610 Sample_00_0005 Blood B-cell 639 3 239 25 0 30 605 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_067000127 chr12:14767768-14777556 Sample_02_0670 Mammary gland breast cancer FA 127 3 279 27 0 31 804 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_122200328 chr12:14767869-14776657 Sample_02_1222 Bone marrow KMS12 328 2 254 23 0 31 700 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_081700993 chr12:14768067-14772472 Sample_02_0817 Ovary Epithelial ovarian cancer 993 2 134 13 0 9 327 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_02_119900284 chr12:14768117-14776406 Sample_02_1199 Brain GBM35 284 3 238 23 0 31 660 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_00_000700336 chr12:14768195-14776393 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 336 2 230 23 0 31 652 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_004400510 chr12:14768243-14776382 Sample_00_0044 Cord blood T-cell 510 2 229 23 0 31 643 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_000800470 chr12:14768265-14776129 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 470 2 224 23 0 31 604 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_000900586 chr12:14768392-14776280 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 586 2 225 23 0 31 619 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_064500628 chr12:14768578-14776667 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 628 2 232 23 0 31 642 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_003200431 chr12:14768611-14776609 Sample_02_0032 Pancreas pancreatic-islets-M 431 2 230 23 0 31 633 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_002700362 chr12:14768613-14776208 Sample_00_0027 Blood natural-killer-cell 362 2 218 23 0 31 594 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_014800508 chr12:14768616-14771716 Sample_02_0148 Blood CD8_T_cells 508 1 112 12 0 9 279 HIST4H4,C12ORF69,WBP11,H2AFJ,C12ORF60
SE_01_008400860 chr12:14768626-14776763 Sample_01_0084 Spleen spleen 860 2 235 25 0 31 650 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_004300213 chr12:14768648-14776651 Sample_00_0043 Stomach stomach_96d 213 2 229 23 0 31 631 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_002500819 chr12:14768665-14776255 Sample_00_0025 Muscle of leg muscle-of-leg 819 2 218 23 0 31 597 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_004700421 chr12:14768700-14772238 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 421 1 113 12 0 9 273 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_00_004500600 chr12:14768702-14776176 Sample_00_0045 Thymus thymus 600 2 215 22 0 31 583 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60,ARHGDIB,C12orf60
SE_02_004200507 chr12:14768709-14775234 Sample_02_0042 Embryo endodermal CyT49_ES_D0 507 2 190 21 0 30 494 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_001100899 chr12:14768717-14775893 Sample_00_0011 Esophagus esophagus 899 2 207 22 0 31 553 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_065900248 chr12:14768717-14776552 Sample_02_0659 Lung H23 248 2 227 22 0 31 623 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_128001265 chr12:14768717-14776598 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1265 2 227 22 0 31 625 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_082900311 chr12:14768733-14776691 Sample_02_0829 Lung H1703 SMARCA4-infected 311 1 229 22 0 31 633 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_02_003601103 chr12:14768745-14775000 Sample_02_0036 Embryo H7 1103 2 186 20 0 30 424 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_032800223 chr12:14768767-14775832 Sample_02_0328 Embryo H9_naive 223 1 206 22 0 31 538 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_155400893 chr12:14768775-14776397 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 893 2 220 22 0 31 596 H2AFJ,HIST4H4,C12ORF60,SMCO3,WBP11
SE_00_003900356 chr12:14768799-14775884 Sample_00_0039 Spleen spleen_3y 356 2 207 22 0 31 541 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60,ART4,C12orf60,GUCY2C,SCO3
SE_00_004100576 chr12:14768800-14776285 Sample_00_0041 Stomach stomach_3y 576 2 217 22 0 31 584 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_004000287 chr12:14768916-14775910 Sample_00_0040 Spleen spleen_30y 287 2 205 21 0 31 540 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60,ART4,C12orf60,GUCY2C,SCO3
SE_00_003400994 chr12:14768939-14775750 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 994 2 203 21 0 31 521 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_003500558 chr12:14768951-14775756 Sample_00_0035 Sigmoid colon sigmoid-colon 558 2 203 21 0 31 521 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_059300517 chr12:14769013-14772463 Sample_02_0593 Fetal spleenocytes fetal naive T cells 517 1 111 11 0 9 247 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_02_059200525 chr12:14769017-14771193 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 525 1 89 6 0 6 229 HIST4H4,C12ORF60,H2AFJ,SMCO3,WBP11
SE_02_001700444 chr12:14769022-14775472 Sample_02_0017 Embryo H9_ESC 444 2 191 21 0 30 499 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_000600874 chr12:14769141-14776010 Sample_00_0006 Blood CD14-positive-monocyte 874 2 204 19 0 31 516 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_006400906 chr12:14769248-14775537 Sample_02_0064 Embryo DN-Early_G1 906 2 187 19 0 30 465 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_002600824 chr12:14769337-14775804 Sample_00_0026 Muscle of trunk muscle-of-trunk 824 2 194 19 0 31 465 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_00_002200388 chr12:14769339-14775766 Sample_00_0022 Lung lung_30y 388 2 194 19 0 31 461 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
SE_02_004300926 chr12:14769365-14775362 Sample_02_0043 Embryo endodermal CyT49_ES_D2 926 3 181 19 0 30 427 H2AFJ,HIST4H4,C12ORF69,WBP11,C12ORF60
Genomic distribution of SEs associated with HIST4H4
Genome Browser

The strength of the tissue affected by the gene

Expression of HIST4H4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)