SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID:
Gene: HIST1H4A Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_008600915 chr6:26019099-26028500 Sample_01_0086 Thoracic aorta thoracic-aorta 915 1 336 22 6 46 323 HIST1H4A,HIST1H4B,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H1C,HIST1H2BB
SE_00_004300320 chr6:26019185-26023408 Sample_00_0043 Stomach stomach_96d 320 1 162 13 3 35 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_01_007800743 chr6:26019279-26028374 Sample_01_0078 Heart left ventricle heart-left-ventricle 743 1 326 21 6 46 323 HIST1H4A,HIST1H4B,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H1C,HIST1H2BB
SE_00_002600282 chr6:26019322-26023079 Sample_00_0026 Muscle of trunk muscle-of-trunk 282 1 150 13 3 35 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_002500360 chr6:26019323-26023371 Sample_00_0025 Muscle of leg muscle-of-leg 360 1 157 13 3 35 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_02_024000749 chr6:26019361-26024063 Sample_02_0240 Colon V429_2 749 1 171 14 3 35 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_004500260 chr6:26019373-26025215 Sample_00_0045 Thymus thymus 260 1 198 17 4 35 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_02_157001191 chr6:26019412-26023330 Sample_02_1570 iPSCs EiPSC 1191 1 154 13 3 35 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_123700827 chr6:26019439-26023359 Sample_02_1237 Skin MKL2_virus_positive 827 1 155 13 3 34 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_068500531 chr6:26019475-26022700 Sample_02_0685 Lung NCI-H1048_no infection 531 1 138 11 2 33 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_00_003800431 chr6:26019488-26023091 Sample_00_0038 Spinal cord spinal-cord_108d 431 1 148 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_02_061701167 chr6:26019517-26024018 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1167 1 167 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_138200433 chr6:26019551-26024045 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 433 1 167 14 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_021200103 chr6:26019600-26023686 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 103 1 159 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_003601312 chr6:26019602-26023014 Sample_00_0036 Small intestine small-intestine_108days 1312 1 143 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_000900835 chr6:26019646-26023058 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 835 1 142 12 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_01_002000748 chr6:26019669-26023110 Sample_01_0020 Blood B-cell 748 1 142 12 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_000300859 chr6:26019730-26023010 Sample_00_0003 Adrenal gland adrenal-gland_97d 859 1 140 12 3 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_00_002700396 chr6:26019818-26022773 Sample_00_0027 Blood natural-killer-cell 396 1 131 10 2 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_02_058001103 chr6:26019827-26024047 Sample_02_0580 Blood HEL_sgSIK3e4 1103 1 162 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_00_003900467 chr6:26019901-26022766 Sample_00_0039 Spleen spleen_3y 467 1 131 10 2 31 228 HIST1H4A,HIST1H3A,HIST1H3B,HIST1H1A,HIST1H2AB,HIST1H3C,HIST1H4B,HIST1H1C,HIST1H2BB
SE_02_143301848 chr6:26020004-26024045 Sample_02_1433 Bone A673 STAG2 null 1848 1 162 13 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_057500442 chr6:26020006-26023987 Sample_02_0575 Blood MOLM13_sgLKB1e2 442 1 160 12 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_057400416 chr6:26020019-26023947 Sample_02_0574 Blood MOLM-13_sgNeg2 416 1 157 12 3 31 228 HIST1H4A,HIST1H3A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
SE_02_084200244 chr6:26021571-26023795 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 244 1 72 9 2 16 100 HIST1H4A,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1C,HIST1H4B,HIST1H2BB,HIST1H3B
Genomic distribution of SEs associated with HIST1H4A
Genome Browser

The strength of the tissue affected by the gene

Expression of HIST1H4A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)