SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000145681
Gene: HAPLN1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:83637805-83720855 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_082500229 chr5:83629626-83727278 Sample_02_0825 Stomach SNU484 229 45 2600 86 10 291 519 HAPLN1
SE_02_075900147 chr5:83632975-83722974 Sample_02_0759 Ovary BIN-67_Control 147 29 2376 76 9 274 519 HAPLN1
SE_02_076100142 chr5:83635525-83722904 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 142 24 2303 75 9 274 519 HAPLN1
SE_02_076000361 chr5:83653782-83721634 Sample_02_0760 Ovary BIN-67_SMARCA4 361 33 1767 68 8 160 117 HAPLN1
SE_02_127800183 chr5:83708310-83745723 Sample_02_1278 Chordoma UCH1_DMSO_48h 183 6 1050 41 2 138 78 HAPLN1
SE_02_011400277 chr5:83712928-83747489 Sample_02_0114 Mammary gland CAL51 277 11 982 31 1 135 78 HAPLN1
SE_02_044600525 chr5:83714036-83788195 Sample_02_0446 Bone osteosarcoma tumor P2 525 32 1983 39 1 199 78 HAPLN1
SE_02_055600314 chr5:83715440-83726279 Sample_02_0556 iPSCs BOFS hiPSC cl1 314 2 276 11 1 79 78 HAPLN1
SE_02_130400732 chr5:83716004-83752268 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 732 12 1041 29 1 130 78 HAPLN1
SE_02_152100701 chr5:83717274-83726102 Sample_02_1521 Skin A375 DMSO 701 2 215 11 1 74 78 HAPLN1
SE_02_055700667 chr5:83718550-83726327 Sample_02_0557 iPSCs WT hiPSC#1 667 1 198 11 1 65 78 HAPLN1
SE_02_074400806 chr5:83783999-83799045 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 806 8 378 2 0 16 0 HAPLN1
SE_02_152100491 chr5:83802454-83830048 Sample_02_1521 Skin A375 DMSO 491 8 711 2 0 59 0 HAPLN1
SE_02_018000653 chr5:83813377-83830516 Sample_02_0180 melanoma CJM 653 2 436 1 0 40 0 HAPLN1
SE_02_031700143 chr5:83878685-83928216 Sample_02_0317 Neuroblastoma GICAN 143 4 1237 117 1 150 0 HAPLN1
SE_02_011100197 chr5:83890493-83928240 Sample_02_0111 Ovaries IOE4 197 4 961 91 1 100 0 HAPLN1
SE_02_049901413 chr5:83895560-83926985 Sample_02_0499 Fetal lung IMR90 IR Senescence 1413 15 804 83 1 92 0 HAPLN1
SE_02_030100797 chr5:83895870-83929228 Sample_02_0301 Neuroblastoma GIMEN 797 3 867 85 0 92 0 HAPLN1
SE_02_063800361 chr5:83898603-83927946 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 361 15 764 77 0 92 0 HAPLN1
SE_01_011100311 chr5:83898678-83928781 Sample_01_0111 Brain SK-N-SH 311 6 793 79 0 92 0 HAPLN1
SE_02_127900762 chr5:83898876-83928530 Sample_02_1279 Bone Mesenchymal stem cells 762 2 779 79 0 92 0 HAPLN1
SE_02_028100166 chr5:83912523-83930550 Sample_02_0281 Bone U2OS 166 1 484 43 0 53 0 HAPLN1
SE_02_077000966 chr5:83912631-83927925 Sample_02_0770 Ovary OVCA429_shLuc 966 8 400 39 0 51 0 HAPLN1
SE_02_015000747 chr5:83913151-83928094 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 747 3 387 39 0 47 0 HAPLN1
SE_02_076700693 chr5:83913260-83927544 Sample_02_0767 Ovary OVCA429 693 15 367 39 0 47 0 HAPLN1
SE_02_086701186 chr5:83913276-83928604 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1186 16 408 41 0 47 0 HAPLN1
SE_02_156900666 chr5:83913591-83927097 Sample_02_1569 Endothelial Endothelial cells 666 3 351 38 0 47 0 HAPLN1
SE_02_010800540 chr5:83913597-83927760 Sample_02_0108 Fallopian tube FT246 540 3 363 39 0 47 0 HAPLN1
SE_02_156800187 chr5:83913649-83927443 Sample_02_1568 Heart Cardiac progenitor cells 187 4 354 39 0 47 0 HAPLN1
SE_02_132800940 chr5:83913649-83927613 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 940 8 359 39 0 47 0 HAPLN1
SE_02_135500979 chr5:83913802-83928417 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 979 4 391 41 0 47 0 HAPLN1
SE_02_135200990 chr5:83913822-83927466 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 990 4 352 39 0 47 0 HAPLN1
SE_02_111300503 chr5:83913919-83927726 Sample_02_1113 Bone U2OS 503 8 355 39 0 47 0 HAPLN1
SE_02_042100655 chr5:83914030-83927054 Sample_02_0421 Brain BE2C_3 655 4 340 37 0 47 0 HAPLN1
SE_01_005601122 chr5:83914105-83928616 Sample_01_0056 Bone osteoblast 1122 3 389 41 0 47 0 HAPLN1
SE_02_055701108 chr5:83914218-83927358 Sample_02_0557 iPSCs WT hiPSC#1 1108 3 339 38 0 47 0 HAPLN1
SE_02_113600653 chr5:83914535-83927823 Sample_02_1136 Bone U2OS-anaphase/telophase 653 8 339 36 0 47 0 HAPLN1
SE_02_113400362 chr5:83914562-83927871 Sample_02_1134 Bone U2OS-interphase 362 9 341 36 0 47 0 HAPLN1
SE_02_007800150 chr5:83914685-83927753 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 150 8 332 36 0 47 0 HAPLN1
SE_02_157100309 chr5:83914799-83927776 Sample_02_1571 Fibroblast Fibroblast cells 309 5 326 36 0 46 0 HAPLN1
SE_02_087901364 chr5:83915521-83927417 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1364 3 297 33 0 46 0 HAPLN1
SE_02_087801266 chr5:83915676-83927113 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1266 4 292 32 0 46 0 HAPLN1
SE_02_009100298 chr5:83918544-83927321 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 298 3 239 29 0 32 0 HAPLN1
SE_02_008800572 chr5:83919101-83928981 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 572 4 289 30 0 32 0 HAPLN1
SE_02_000600095 chr5:83947341-83947419 Sample_02_0006 Cervical cervical-cancer_parental 95 1 1 0 0 0 0 EDIL3,HAPLN1
SE_02_068200212 chr5:83955702-83972487 Sample_02_0682 Blood Kasumi-1 212 9 379 12 1 47 37 EDIL3,HAPLN1
SE_02_134000268 chr5:83956163-83970485 Sample_02_1340 Blood acute myeloid leukemia 268 10 326 10 1 45 37 EDIL3,HAPLN1
SE_02_127600329 chr5:84010873-84037141 Sample_02_1276 Prostate PC3_GSK126 329 25 687 2 1 34 0 EDIL3,HAPLN1
SE_02_047500425 chr5:84011515-84035054 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 425 9 628 1 1 34 0 EDIL3,HAPLN1
SE_02_127400144 chr5:84012027-84037058 Sample_02_1274 Prostate PC3_DMSO 144 18 641 1 1 34 0 EDIL3,HAPLN1
SE_02_154900731 chr5:84012389-84034208 Sample_02_1549 Gastrointestinal Stromal GIST-430B 731 8 573 1 1 30 0 EDIL3,HAPLN1
Genomic distribution of SEs associated with HAPLN1
Genome Browser

The strength of the tissue affected by the gene

Expression of HAPLN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)