SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000125812
Gene: GZF1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:23362182-23373062 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_002000529 chr20:23348488-23367941 Sample_01_0020 Blood B-cell 529 5 548 71 0 61 811 NXT1,GZF1
SE_02_035900298 chr20:23348554-23367438 Sample_02_0359 Colon Colo741 298 3 536 71 0 61 811 NXT1,GZF1
SE_00_004400430 chr20:23348628-23367355 Sample_00_0044 Cord blood T-cell 430 4 533 70 0 61 811 NXT1,GZF1
SE_01_008500471 chr20:23348646-23366994 Sample_01_0085 Stomach stomach 471 3 525 69 0 56 789 NXT1,GZF1
SE_01_008800826 chr20:23348690-23368261 Sample_01_0088 Tibial nerve tibial-nerve 826 4 550 72 0 61 811 NXT1,GZF1
SE_00_000700184 chr20:23348699-23369490 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 184 4 581 76 0 68 867 NXT1,GZF1
SE_00_000900299 chr20:23348701-23367335 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 299 4 528 69 0 61 811 NXT1,GZF1
SE_02_017201394 chr20:23348701-23372255 Sample_02_0172 Lung IMR-90_quiescent 1394 6 669 84 1 93 1115 NXT1,GZF1,NAPB
SE_00_002700210 chr20:23348714-23366831 Sample_00_0027 Blood natural-killer-cell 210 4 522 68 0 56 776 NXT1,GZF1
SE_02_032300204 chr20:23348918-23369100 Sample_02_0323 Colon RKO 204 4 562 74 0 68 853 NXT1,GZF1
SE_02_092800638 chr20:23355590-23368410 Sample_02_0928 Peripheral blood neutrophils_Ecoli 638 3 350 45 0 42 485 LINC01431,GZF1,NXT1
SE_02_076000569 chr20:23355983-23367982 Sample_02_0760 Ovary BIN-67_SMARCA4 569 4 333 39 0 42 485 LINC01431,GZF1,NXT1
SE_01_006900625 chr20:23356622-23373131 Sample_01_0069 Adrenal gland adrenal-gland 625 3 453 48 1 75 892 GZF1,NXT1,NAPB
SE_00_002100705 chr20:23356681-23363997 Sample_00_0021 Lung lung_3y 705 2 209 25 0 5 210 NXT1,GZF1,CSTL1
SE_01_008401241 chr20:23356729-23367289 Sample_01_0084 Spleen spleen 1241 4 288 32 0 42 485 GZF1,NXT1
SE_00_003401096 chr20:23356778-23363744 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1096 2 196 21 0 5 210 NXT1,GZF1
SE_02_149201371 chr20:23356890-23366874 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1371 1 279 30 0 37 457 LINC01431,GZF1,NXT1
SE_00_003900805 chr20:23356911-23363820 Sample_00_0039 Spleen spleen_3y 805 2 200 21 0 5 210 NXT1,GZF1,CST11,CST8,CSTL1
SE_00_002200990 chr20:23356924-23363776 Sample_00_0022 Lung lung_30y 990 2 194 20 0 5 210 NXT1,GZF1,CSTL1
SE_02_081901009 chr20:23356998-23366477 Sample_02_0819 Ovary Mucinous ovarian cancer 1009 3 271 29 0 35 450 LINC01431,GZF1,NXT1
SE_01_010100877 chr20:23357002-23366990 Sample_01_0101 Pancreas pancreas_54y 877 3 278 31 0 37 462 LINC01431,GZF1,NXT1
SE_00_000300820 chr20:23357011-23373197 Sample_00_0003 Adrenal gland adrenal-gland_97d 820 4 444 46 1 75 895 GZF1,NXT1,NAPB
SE_00_004000683 chr20:23357012-23363219 Sample_00_0040 Spleen spleen_30y 683 2 182 20 0 4 161 NXT1,GZF1,CST11,CST8,CSTL1
SE_02_027401066 chr20:23357050-23363444 Sample_02_0274 Endometriosis hTERT_KD 1066 2 185 20 0 4 196 NXT1,GZF1
SE_00_003300479 chr20:23357237-23371705 Sample_00_0033 Psoas muscle psoas-muscle_3y 479 3 405 44 1 66 755 GZF1,NXT1,NAPB
SE_02_001400224 chr20:23357561-23363266 Sample_02_0014 Liver HepG2_shBRG1 224 3 171 19 0 4 167 NXT1,GZF1
SE_02_146001414 chr20:23359911-23372074 Sample_02_1460 Blood Mutz-3 1414 5 340 40 1 68 776 GZF1,NXT1,LINC01431,NAPB
SE_02_126501483 chr20:23360574-23369224 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1483 5 230 29 0 49 529 GZF1,NXT1,LINC01431
SE_02_142700963 chr20:23360575-23366556 Sample_02_1427 Shoulder fibroblast_343 963 3 171 21 0 35 450 GZF1,NXT1,LINC01431
SE_02_119900664 chr20:23360635-23363799 Sample_02_1199 Brain GBM35 664 1 93 12 0 5 210 NXT1,GZF1,LINC01431
SE_02_081601685 chr20:23360684-23363428 Sample_02_0816 Ovary Clear cell ovarian cancer 1685 1 80 11 0 4 195 NXT1,GZF1,LINC01431
SE_02_126701349 chr20:23360705-23369131 Sample_02_1267 Bone Im-GCT-4072_G34W 1349 2 220 29 0 49 529 GZF1,NXT1,LINC01431
SE_02_074600821 chr20:23360759-23368935 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 821 3 214 26 0 49 513 GZF1,NXT1,LINC01431
SE_02_136600758 chr20:23360769-23363126 Sample_02_1366 Pancreas BxPC3-untreated 758 2 71 10 0 4 145 NXT1,GZF1,LINC01431
SE_02_126000656 chr20:23360802-23363178 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 656 1 72 11 0 4 157 NXT1,GZF1,LINC01431
SE_02_109400269 chr20:23360803-23363191 Sample_02_1094 Embryo H9_0Dox 269 2 72 11 0 4 159 NXT1,GZF1,LINC01431
SE_02_117400960 chr20:23360851-23371490 Sample_02_1174 Brain GBM02 960 4 291 35 1 66 741 GZF1,NXT1,LINC01431
SE_02_074500335 chr20:23360867-23363467 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 335 2 76 11 0 4 202 NXT1,GZF1,LINC01431
SE_02_137200487 chr20:23360886-23363243 Sample_02_1372 Pancreas PSN1-untreated 487 2 71 11 0 4 162 NXT1,GZF1,LINC01431
SE_02_138000751 chr20:23360888-23363611 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 751 2 77 11 0 5 210 NXT1,GZF1,LINC01431
SE_02_064501877 chr20:23360891-23368477 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1877 5 197 25 0 42 485 GZF1,NXT1,LINC01431
SE_02_126100546 chr20:23360902-23363144 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 546 2 67 9 0 4 150 NXT1,GZF1,LINC01431
SE_02_064601346 chr20:23360924-23367646 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1346 5 179 22 0 42 485 GZF1,NXT1,LINC01431
SE_02_098200385 chr20:23360949-23363617 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 385 1 73 10 0 5 210 NXT1,GZF1,LINC01431
SE_02_098000267 chr20:23361061-23363256 Sample_02_0980 Brain BT245 267 2 65 10 0 4 165 NXT1,GZF1,LINC01431
SE_02_126900782 chr20:23361066-23363577 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 782 1 71 10 0 5 210 NXT1,GZF1,LINC01431
SE_02_048900400 chr20:23361068-23363310 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 400 1 67 10 0 4 174 NXT1,GZF1,LINC01431
SE_02_048300482 chr20:23361070-23362835 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 482 2 56 8 0 4 133 NXT1,GZF1,LINC01431
SE_02_126801104 chr20:23361071-23363064 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1104 1 60 9 0 4 135 NXT1,GZF1,LINC01431
SE_02_048400490 chr20:23361081-23362852 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 490 2 57 8 0 4 133 NXT1,GZF1,LINC01431
SE_02_059100541 chr20:23361084-23363170 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 541 1 65 10 0 4 154 NXT1,GZF1,LINC01431
SE_02_065001143 chr20:23361114-23368897 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 1143 7 203 25 0 47 508 GZF1,NXT1,LINC01431
SE_02_064901315 chr20:23361140-23367669 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1315 5 174 22 0 42 485 GZF1,NXT1,LINC01431
SE_02_126200624 chr20:23361168-23362957 Sample_02_1262 Bone Im-GCT-3504_G34W 624 1 59 9 0 4 133 NXT1,GZF1,LINC01431
SE_02_065700584 chr20:23361219-23367506 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 584 4 169 22 0 42 485 GZF1,NXT1,LINC01431
SE_02_059200455 chr20:23361236-23363094 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 455 1 57 9 0 4 138 NXT1,GZF1,LINC01431
SE_02_064400852 chr20:23361242-23366959 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 852 4 157 21 0 37 462 GZF1,NXT1,LINC01431
SE_02_048800300 chr20:23361308-23362744 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 300 2 48 7 0 4 133 NXT1,GZF1,LINC01431
SE_02_080500065 chr20:23361523-23362713 Sample_02_0805 Brain 2223_GBM 65 2 42 6 0 3 133 NXT1,GZF1,LINC01431
Genomic distribution of SEs associated with GZF1
Genome Browser

The strength of the tissue affected by the gene

Expression of GZF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)