SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000139433
Gene: GLTP Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:109850945-109880541 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_113100079 chr12:109837243-109893955 Sample_02_1131 Pancreas T3M4 wt 79 20 1372 140 4 88 825 GLTP,TCHP,MIR4497,TRPV4
SE_02_113200295 chr12:109837470-109889868 Sample_02_1132 Pancreas KLM1 wt 295 18 1275 129 4 87 825 GLTP,TCHP,MIR4497,TRPV4
SE_02_047900890 chr12:109837595-109890249 Sample_02_0479 Head and neck SCC25 890 22 1277 128 4 88 825 GLTP,TCHP,MIR4497,TRPV4
SE_02_103600908 chr12:109837798-109909959 Sample_02_1036 Mammary gland HCC70_XY018 908 27 1789 194 6 104 1430 TCHP,GLTP,MIR4497,TRPV4
SE_02_121300431 chr12:109839859-109880480 Sample_02_1213 Brain GBM31 431 15 983 103 3 63 755 GLTP,TCHP,MIR4497,TRPV4
SE_02_120400481 chr12:109840139-109880436 Sample_02_1204 Brain NB2 481 15 969 103 3 63 740 GLTP,TCHP,MIR4497,TRPV4
SE_02_120300395 chr12:109840167-109880465 Sample_02_1203 Brain NB1 395 11 971 103 3 63 753 GLTP,TCHP,MIR4497,TRPV4
SE_02_104301117 chr12:109843362-109889428 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1117 22 1116 105 3 73 825 GLTP,TCHP,MIR4497,TRPV4
SE_02_098900791 chr12:109852892-109890820 Sample_02_0989 Kidney kidney cortex_WT 791 11 891 88 2 66 548 GLTP,TCHP,MIR4497,TRPV4
SE_02_035000244 chr12:109852955-109880442 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 244 15 643 74 2 45 461 GLTP,TCHP,TRPV4
SE_02_120500669 chr12:109853123-109880505 Sample_02_1205 Brain NB3 669 15 642 74 2 48 484 GLTP,TCHP,MIR4497,TRPV4
SE_02_136000879 chr12:109853395-109889762 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 879 13 860 85 2 63 545 GLTP,TCHP,MIR4497,TRPV4
SE_02_103501466 chr12:109853489-109889508 Sample_02_1035 Mammary gland HCC70_Vehicle 1466 20 852 85 2 62 545 GLTP,TCHP,MIR4497,TRPV4
SE_02_119600623 chr12:109854830-109889851 Sample_02_1196 Brain GBM32 623 24 822 79 2 64 545 GLTP,TCHP,MIR4497,TRPV4
SE_02_101300410 chr12:109855321-109878576 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 410 15 534 59 2 32 371 GLTP,TCHP,MIR4497,TRPV4
SE_02_100800209 chr12:109856518-109878794 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 209 8 507 58 2 25 259 GLTP,TCHP,MIR4497,TRPV4
SE_02_045200538 chr12:109858821-109891108 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 538 8 734 73 2 58 190 GLTP,TCHP,MIR4497,TRPV4
SE_02_025700328 chr12:109859717-109881112 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 328 2 472 56 2 44 174 GLTP,TCHP,TRPV4
SE_02_103100326 chr12:109859963-109898520 Sample_02_1031 Head and neck SCC1 contol 326 16 877 92 2 58 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_067400925 chr12:109860153-109872447 Sample_02_0674 Endometrium E1_FA 925 8 272 30 1 16 0 GLTP,TCHP,MIR4497,TRPV4
SE_02_081700944 chr12:109860186-109889311 Sample_02_0817 Ovary Epithelial ovarian cancer 944 7 663 61 2 54 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_067200949 chr12:109860280-109875865 Sample_02_0672 Endometrium endometrium cancer_DSG 949 6 345 37 2 22 0 GLTP,TCHP,MIR4497,TRPV4
SE_02_117600670 chr12:109860370-109890277 Sample_02_1176 Brain GBM04 670 12 680 63 2 58 174 GLTP,TCHP,MIR4497,TRPV4
SE_01_008801046 chr12:109860532-109881290 Sample_01_0088 Tibial nerve tibial-nerve 1046 2 457 50 2 44 174 GLTP,TCHP,TRPV4
SE_02_121100617 chr12:109861816-109880444 Sample_02_1211 Brain GBM21 617 12 412 41 2 30 90 GLTP,TCHP,MIR4497,TRPV4
SE_02_096900703 chr12:109861890-109890121 Sample_02_0969 Brain H3.3K27M_PL637 703 8 646 54 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_100000250 chr12:109861906-109879097 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 250 9 382 37 2 17 0 GLTP,TCHP,MIR4497,TRPV4
SE_02_119800772 chr12:109861943-109890083 Sample_02_1198 Brain GBM34 772 11 645 54 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_01_010700213 chr12:109862357-109896946 Sample_01_0107 Esophagus esophagus squamous epithelium 213 4 786 71 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_00_003100768 chr12:109862975-109900631 Sample_00_0031 Placenta placenta 768 6 848 76 2 53 291 TCHP,GLTP,TRPV4
SE_02_006300697 chr12:109863011-109890633 Sample_02_0063 Skin Keratinocytes 697 8 621 49 2 51 174 GLTP,TCHP,TRPV4
SE_00_001100187 chr12:109863219-109901298 Sample_00_0011 Esophagus esophagus 187 12 863 77 2 53 339 TCHP,GLTP,TRPV4
SE_00_004100767 chr12:109863267-109901456 Sample_00_0041 Stomach stomach_3y 767 9 866 76 2 53 339 TCHP,GLTP,TRPV4
SE_02_010500109 chr12:109863293-109897930 Sample_02_0105 Skin neonatal_keratinocytes 109 3 782 68 2 51 174 GLTP,TCHP,TRPV4
SE_02_093001426 chr12:109863390-109889286 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1426 17 589 45 2 47 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_124800706 chr12:109863739-109876717 Sample_02_1248 Bladder RT4 706 4 289 23 2 15 0 GLTP,TCHP,MIR4497,TRPV4
SE_02_125400582 chr12:109863794-109890190 Sample_02_1254 Bladder Bladder tumor Basal1 582 10 604 45 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_094500393 chr12:109863846-109893828 Sample_02_0945 Brain SF767 393 8 683 54 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_092901222 chr12:109863955-109889008 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1222 11 570 43 2 47 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_088600783 chr12:109863984-109890598 Sample_02_0886 Skin foreskin_ p63KLF4 783 10 605 46 2 51 174 GLTP,TCHP,MIR4497,TRPV4
SE_02_009900180 chr12:109863996-109890544 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 180 8 605 46 2 50 174 GLTP,TCHP,TRPV4
SE_01_002700467 chr12:109864005-109890405 Sample_01_0027 Prostate epithelial-cell-of-prostate 467 4 604 46 2 50 174 GLTP,TCHP,TRPV4
SE_02_031700896 chr12:109864132-109892782 Sample_02_0317 Neuroblastoma GICAN 896 4 657 51 2 50 174 GLTP,TCHP,TRPV4
SE_02_011200984 chr12:109870117-109890854 Sample_02_0112 Connective tissue HT1080_untreated 984 3 467 37 1 46 174 GLTP,TRPV4,TCHP
SE_02_146001362 chr12:109871055-109893947 Sample_02_1460 Blood Mutz-3 1362 7 520 43 1 42 174 GLTP,MIR4497,TCHP,TRPV4
SE_03_000300312 chr12:109880520-109890413 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 312 3 236 14 0 16 54 TRPV4,TCHP,GLTP
SE_02_122801135 chr12:109886471-109891041 Sample_02_1228 Mammary gland MDA-MB-231_2 1135 3 114 8 0 6 0 GLTP,TCHP
SE_02_093900485 chr12:109887093-109890480 Sample_02_0939 Mammary gland MDA-MB-231_control 485 2 82 5 0 6 0 GLTP,TCHP
Genomic distribution of SEs associated with GLTP
Genome Browser

The strength of the tissue affected by the gene

Expression of GLTP

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)