SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000139112
Gene: GABARAPL1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:10212458-10223128 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103000266 chr12:10175313-10226298 Sample_02_1030 Colon DKO 266 25 1550 203 9 128 1148 TMEM52B,GABARAPL1,OLR1,CLEC7A
SE_02_103602319 chr12:10181392-10229970 Sample_02_1036 Mammary gland HCC70_XY018 2319 19 1513 196 8 112 1041 TMEM52B,GABARAPL1,OLR1
SE_02_104301566 chr12:10181817-10244803 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1566 23 1908 241 8 112 1041 TMEM52B,GABARAPL1,OLR1
SE_02_086900823 chr12:10181822-10215405 Sample_02_0869 Fibroblast VH10_NO_UV 823 10 1013 139 5 75 668 TMEM52B,GABARAPL1,OLR1
SE_02_001000759 chr12:10182004-10216519 Sample_02_0010 Kidney A-498_emptyvector 759 4 1047 149 5 75 668 GABARAPL1,C12ORF59,OLR1
SE_02_088200989 chr12:10182062-10215899 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 989 6 1021 141 5 75 668 TMEM52B,GABARAPL1,OLR1
SE_02_088300927 chr12:10182097-10215684 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 927 5 1014 140 5 75 668 TMEM52B,GABARAPL1,OLR1
SE_02_138000575 chr12:10182148-10214903 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 575 7 994 138 4 75 666 TMEM52B,GABARAPL1,OLR1
SE_02_087801210 chr12:10182163-10215372 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1210 5 1005 139 5 75 668 TMEM52B,GABARAPL1,OLR1
SE_02_087901341 chr12:10182260-10215420 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1341 7 1004 139 5 74 668 TMEM52B,GABARAPL1,OLR1
SE_02_058900215 chr12:10182298-10215962 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 215 10 1017 141 5 74 668 TMEM52B,GABARAPL1,OLR1,C12ORF59
SE_02_137601015 chr12:10182378-10215614 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 1015 10 1008 140 5 74 664 TMEM52B,GABARAPL1,OLR1
SE_02_152600587 chr12:10189180-10215457 Sample_02_1526 Lung PC9 DMSO 587 7 812 108 5 51 540 TMEM52B,GABARAPL1,OLR1
SE_02_126500932 chr12:10189493-10216012 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 932 5 819 110 5 51 540 TMEM52B,GABARAPL1,OLR1
SE_00_002401218 chr12:10189637-10215761 Sample_00_0024 Embryo mesendoderm 1218 4 809 108 5 51 540 GABARAPL1,C12ORF59,OLR1
SE_02_126600850 chr12:10189658-10215847 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 850 6 809 108 5 51 540 TMEM52B,GABARAPL1,OLR1
SE_02_126401191 chr12:10189792-10215832 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1191 6 804 106 5 51 530 TMEM52B,GABARAPL1,OLR1
SE_02_012400250 chr12:10190898-10216574 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 250 4 788 111 5 38 425 GABARAPL1,C12ORF59,OLR1
SE_02_113600638 chr12:10191429-10215744 Sample_02_1136 Bone U2OS-anaphase/telophase 638 4 742 100 5 38 357 TMEM52B,GABARAPL1,OLR1
SE_02_059000257 chr12:10191496-10215651 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 257 7 737 99 5 38 344 TMEM52B,GABARAPL1,OLR1,C12ORF59
SE_02_075501393 chr12:10197589-10221226 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1393 8 718 97 5 52 451 GABARAPL1,TMEM52B,OLR1
SE_02_088001127 chr12:10204002-10215821 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1127 2 356 50 4 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_088101099 chr12:10204327-10215638 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 1099 2 342 48 4 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_041500332 chr12:10204602-10216061 Sample_02_0415 Stomach YCC22 332 2 342 47 3 29 299 GABARAPL1,C12ORF59,OLR1
SE_02_136600697 chr12:10204827-10215221 Sample_02_1366 Pancreas BxPC3-untreated 697 5 314 42 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_070700994 chr12:10204875-10215384 Sample_02_0707 Pancreas BxPC3 WT 994 4 322 43 3 29 299 GABARAPL1,TMEM52B,OLR1
SE_01_006600567 chr12:10205045-10221374 Sample_01_0066 Smooth muscle smooth-muscle-cell 567 3 499 68 4 47 451 GABARAPL1,C12ORF59,OLR1
SE_02_126900670 chr12:10205288-10215530 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 670 3 315 43 3 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_047401301 chr12:10205325-10221002 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1301 3 484 67 3 46 436 GABARAPL1,TMEM52B,OLR1
SE_00_000301089 chr12:10206659-10215674 Sample_00_0003 Adrenal gland adrenal-gland_97d 1089 3 290 33 2 29 299 GABARAPL1,C12ORF59,OLR1
SE_02_156901525 chr12:10206836-10221737 Sample_02_1569 Endothelial Endothelial cells 1525 3 463 57 3 48 465 GABARAPL1,TMEM52B,OLR1
SE_02_130800408 chr12:10206878-10221380 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 408 3 453 57 3 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_088800808 chr12:10207364-10221597 Sample_02_0888 Heart left ventricle_LV1160 808 5 444 56 3 48 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_062000411 chr12:10207407-10221241 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 411 6 431 55 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_127300537 chr12:10209668-10217383 Sample_02_1273 Cervix HeLa 537 1 235 37 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_065900199 chr12:10210196-10216802 Sample_02_0659 Lung H23 199 1 198 35 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_01_009700569 chr12:10210856-10226753 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 569 3 497 65 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_02_017201282 chr12:10210912-10216236 Sample_02_0172 Lung IMR-90_quiescent 1282 1 150 25 2 29 299 GABARAPL1,C12ORF59,OLR1
SE_01_009800595 chr12:10210919-10222212 Sample_01_0098 Heart left ventricle_51y 595 4 332 47 3 57 532 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_01_007800950 chr12:10210960-10221783 Sample_01_0078 Heart left ventricle heart-left-ventricle 950 2 314 46 3 49 465 GABARAPL1,C12ORF59,OLR1
SE_01_008100738 chr12:10211057-10222231 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 738 1 325 46 3 57 533 GABARAPL1,C12ORF59,OLR1
SE_01_008000440 chr12:10211200-10221660 Sample_01_0080 Prostate prostate 440 2 302 43 3 48 452 GABARAPL1,C12ORF59,OLR1
SE_02_090400734 chr12:10211256-10226408 Sample_02_0904 Heart left ventricle_DCM_LV1028 734 6 473 60 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_01_008501339 chr12:10211263-10221676 Sample_01_0085 Stomach stomach 1339 2 302 43 3 48 455 GABARAPL1,C12ORF59,OLR1
SE_02_142700761 chr12:10211313-10220468 Sample_02_1427 Shoulder fibroblast_343 761 2 270 39 2 33 384 GABARAPL1,TMEM52B,OLR1
SE_02_032501071 chr12:10211323-10221635 Sample_02_0325 Liver hepatocytes_d1 1071 2 298 41 3 48 451 GABARAPL1,C12ORF59,OLR1
SE_02_108200718 chr12:10211427-10226363 Sample_02_1082 Retina retina 718 7 468 58 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_00_004101276 chr12:10211454-10221186 Sample_00_0041 Stomach stomach_3y 1276 2 280 40 2 47 451 GABARAPL1,C12ORF59,OLR1
SE_00_003400976 chr12:10211457-10221241 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 976 2 280 40 2 47 451 GABARAPL1,C12ORF59,OLR1
SE_01_003700771 chr12:10211470-10215689 Sample_01_0037 Liver hepatocyte 771 1 110 17 2 29 299 GABARAPL1,C12ORF59,OLR1
SE_02_091301104 chr12:10211485-10226570 Sample_02_0913 Heart left ventricle_DCM_LV1304 1104 6 469 58 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_01_002900413 chr12:10211509-10215458 Sample_01_0029 Lung fibroblast-of-lung 413 1 103 16 2 29 299 GABARAPL1,C12ORF59,OLR1
SE_02_142600464 chr12:10211511-10215790 Sample_02_1426 Shoulder fibroblast_341 464 1 111 17 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_098901639 chr12:10211520-10221086 Sample_02_0989 Kidney kidney cortex_WT 1639 3 274 40 2 46 447 GABARAPL1,TMEM52B,OLR1
SE_02_081600933 chr12:10211525-10220995 Sample_02_0816 Ovary Clear cell ovarian cancer 933 3 273 40 2 46 436 GABARAPL1,TMEM52B,OLR1
SE_02_088901111 chr12:10211529-10221423 Sample_02_0889 Heart left ventricle_LV1183 1111 4 283 41 3 48 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_032600841 chr12:10211532-10221586 Sample_02_0326 Liver hepatocytes_d3 841 2 290 41 3 48 451 GABARAPL1,C12ORF59,OLR1
SE_02_090600999 chr12:10211538-10221504 Sample_02_0906 Heart left ventricle_DCM_LV1072 999 2 287 41 3 48 451 GABARAPL1,TMEM52B,OLR1
SE_02_090501075 chr12:10211553-10221730 Sample_02_0905 Heart left ventricle_DCM_LV1033 1075 5 292 41 3 48 465 GABARAPL1,TMEM52B,OLR1
SE_02_090301008 chr12:10211576-10226456 Sample_02_0903 Heart left ventricle_DCM_LV1009 1008 6 464 57 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_02_142801004 chr12:10211593-10215793 Sample_02_1428 Shoulder fibroblast_316 1004 1 110 16 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_090700793 chr12:10211595-10226336 Sample_02_0907 Heart left ventricle_DCM_LV1223 793 4 462 57 4 63 672 GABARAPL1,TMEM52B,OLR1
SE_02_088700850 chr12:10211610-10221431 Sample_02_0887 Heart left ventricle_LV1121 850 2 280 40 3 48 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_126701234 chr12:10211620-10215329 Sample_02_1267 Bone Im-GCT-4072_G34W 1234 1 97 15 2 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_091900825 chr12:10211628-10221430 Sample_02_0919 Heart left ventricle_DCM_LV1532 825 3 279 40 3 48 451 GABARAPL1,TMEM52B,OLR1
SE_00_002100876 chr12:10211629-10221350 Sample_00_0021 Lung lung_3y 876 2 278 40 3 47 451 GABARAPL1,C12ORF59,OLR1
SE_02_091000945 chr12:10211632-10222442 Sample_02_0910 Heart left ventricle_DCM_LV1275 945 6 308 41 3 58 574 GABARAPL1,TMEM52B,OLR1
SE_02_108300827 chr12:10211651-10236374 Sample_02_1083 Macula macula 827 8 764 87 5 66 672 GABARAPL1,TMEM52B,OLR1
SE_02_090200755 chr12:10211652-10224300 Sample_02_0902 Heart left ventricle_LV1558 755 5 347 46 4 63 672 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_089601202 chr12:10211657-10222389 Sample_02_0896 Heart left ventricle_LV1294 1202 5 307 40 3 58 562 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_145400658 chr12:10211672-10221097 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 658 2 271 38 2 46 447 GABARAPL1,TMEM52B,OLR1
SE_02_089900647 chr12:10211687-10222433 Sample_02_0899 Heart left ventricle_LV1400 647 8 307 40 3 58 570 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_092001039 chr12:10211718-10221179 Sample_02_0920 Heart left ventricle_DCM_LV1535 1039 4 269 37 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_089300823 chr12:10211730-10221238 Sample_02_0893 Heart left ventricle_LV1226 823 3 269 37 2 47 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_00_002900869 chr12:10211739-10214430 Sample_00_0029 Ovary ovary 869 2 73 10 0 28 262 GABARAPL1,C12ORF59,OLR1
SE_02_091700967 chr12:10211745-10221337 Sample_02_0917 Heart left ventricle_DCM_LV1433 967 3 271 36 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_01_010100731 chr12:10211755-10221166 Sample_01_0101 Pancreas pancreas_54y 731 2 267 35 1 47 451 GABARAPL1,TMEM52B,OLR1
SE_01_010400961 chr12:10211788-10221529 Sample_01_0104 Lung upper lobe of left lung 961 2 274 35 2 48 451 GABARAPL1,TMEM52B,OLR1
SE_02_142100177 chr12:10211837-10216443 Sample_02_1421 Brain NHA 177 1 123 19 1 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_090001073 chr12:10211870-10221333 Sample_02_0900 Heart left ventricle_LV1452 1073 4 266 35 2 47 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_089700933 chr12:10211889-10221334 Sample_02_0897 Heart left ventricle_LV1325 933 4 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_089801042 chr12:10211897-10222031 Sample_02_0898 Heart left ventricle_LV1356 1042 3 287 35 2 57 505 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_091101032 chr12:10211910-10221802 Sample_02_0911 Heart left ventricle_DCM_LV1290 1032 5 276 35 2 49 468 GABARAPL1,TMEM52B,OLR1
SE_02_091801038 chr12:10211912-10221357 Sample_02_0918 Heart left ventricle_DCM_LV1437 1038 2 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_130900349 chr12:10211949-10221303 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 349 2 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_01_010300582 chr12:10211956-10220964 Sample_01_0103 Pancreas pancreas_37y 582 2 254 33 1 46 434 GABARAPL1,TMEM52B,OLR1
SE_02_145500634 chr12:10211958-10215026 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 634 1 73 9 0 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_089001080 chr12:10211960-10221294 Sample_02_0890 Heart left ventricle_LV1200 1080 3 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_089400804 chr12:10211963-10221435 Sample_02_0894 Heart left ventricle_LV1248 804 3 266 35 2 48 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_091501104 chr12:10211966-10221382 Sample_02_0915 Heart left ventricle_DCM_LV1371 1104 3 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_115300514 chr12:10211966-10253907 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 514 6 1239 162 4 66 672 GABARAPL1,TMEM52B,OLR1
SE_02_093700554 chr12:10211977-10215743 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 554 1 93 11 1 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_090901107 chr12:10211984-10221609 Sample_02_0909 Heart left ventricle_DCM_LV1264 1107 3 274 35 2 48 451 GABARAPL1,TMEM52B,OLR1
SE_02_091600894 chr12:10211985-10221372 Sample_02_0916 Heart left ventricle_DCM_LV1392 894 2 265 35 2 47 451 GABARAPL1,TMEM52B,OLR1
SE_02_145200991 chr12:10212021-10215135 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 991 1 74 9 0 29 299 GABARAPL1,TMEM52B,OLR1
SE_02_089500669 chr12:10212401-10221633 Sample_02_0895 Heart left ventricle_LV1259 669 4 255 34 2 45 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_00_005201052 chr12:10212461-10221117 Sample_00_0052 Heart left ventricle 3y 1052 4 239 33 1 43 451 GABARAPL1,TMEM52B,OLR1,KLRD1
SE_02_092901017 chr12:10212476-10215610 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1017 1 68 10 1 26 299 GABARAPL1,TMEM52B,OLR1
SE_01_005300406 chr12:10212886-10253646 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 406 7 1204 160 4 54 638 GABARAPL1,C12ORF59,OLR1
SE_02_099900098 chr12:10212986-10294773 Sample_02_0999 Lymphoma OCI-LY1_966 98 51 2265 238 7 55 611 GABARAPL1,KLRD1,TMEM52B,OLR1
SE_02_099800117 chr12:10214965-10294124 Sample_02_0998 Lymphoma OCI-LY1_DMSO 117 62 2203 228 7 38 373 GABARAPL1,KLRD1,TMEM52B,OLR1
SE_02_021300196 chr12:10225776-10255207 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 196 2 870 116 1 3 0 C12ORF59,GABARAPL1,KLRD1
SE_02_121800451 chr12:10226220-10254253 Sample_02_1218 Bone marrow Daudi 451 16 808 110 1 3 0 TMEM52B,GABARAPL1
SE_02_004600609 chr12:10360574-10368916 Sample_02_0046 Embryo endodermal CyT49_ES_D10 609 3 280 40 2 0 114 KLRK1,KLRC4,GABARAPL1
SE_01_009100780 chr12:10360772-10370173 Sample_01_0091 Uterus uterus 780 1 308 44 2 0 114 KLRK1,KLRC4,GABARAPL1
SE_00_004300729 chr12:10361074-10368947 Sample_00_0043 Stomach stomach_96d 729 3 260 36 2 0 114 KLRK1,KLRC4,GABARAPL1
SE_02_035000568 chr12:10362941-10372996 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 568 4 308 47 1 0 228 KLRK1,KLRC4,KLRC3,GABARAPL1
Genomic distribution of SEs associated with GABARAPL1
Genome Browser

The strength of the tissue affected by the gene

Expression of GABARAPL1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)