SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000160867
Gene: FGFR4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:177086905-177098144 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104601000 chr5:177055802-177117280 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1000 21 1767 218 10 175 2607 FGFR4,ZNF346,NSD1,UIMC1
SE_02_125300042 chr5:177066485-177114932 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 42 11 1427 167 8 162 2181 FGFR4,ZNF346,NSD1
SE_00_000300630 chr5:177070487-177117552 Sample_00_0003 Adrenal gland adrenal-gland_97d 630 7 1418 164 10 166 2125 FGFR4,ZNF346,NSD1
SE_02_040400105 chr5:177070953-177111788 Sample_02_0404 Mammary gland ZR-75-1_2 105 8 1253 142 7 158 2125 FGFR4,ZNF346,NSD1
SE_02_107800066 chr5:177071289-177117350 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 66 19 1393 161 10 166 2125 FGFR4,ZNF346,NSD1
SE_02_021101109 chr5:177071612-177099484 Sample_02_0211 Lung MRC-5_NFD_1DPT 1109 4 816 79 5 140 2125 FGFR4,ZNF346,NSD1
SE_02_141300059 chr5:177071680-177112014 Sample_02_1413 Muscle RH4_sgBRG1 59 7 1238 142 7 158 2125 FGFR4,ZNF346,NSD1
SE_02_074000074 chr5:177071692-177111632 Sample_02_0740 Muscle RH3 74 11 1230 140 7 158 2125 FGFR4,ZNF346,NSD1
SE_02_075300593 chr5:177072067-177099777 Sample_02_0753 Embryo ES-derived progenitors_FG type 593 5 821 77 5 140 2125 FGFR4,ZNF346,NSD1
SE_02_047600511 chr5:177072249-177110693 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 511 9 1192 137 7 158 2125 FGFR4,ZNF346,NSD1
SE_02_037400022 chr5:177074171-177112223 Sample_02_0374 Skeletal muscle RMS209 22 4 1179 140 7 161 2125 FGFR4,NSD1
SE_02_107900046 chr5:177079816-177117331 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 46 12 1176 140 10 166 2020 FGFR4,ZNF346,NSD1
SE_02_101500209 chr5:177081946-177135418 Sample_02_1015 Embryo H9_ Undifferentiated 209 8 1515 173 15 289 2120 NSD1,FGFR4
SE_02_004800415 chr5:177083594-177110791 Sample_02_0048 Embryo endodermal CyT49_HE 415 8 846 105 7 157 1765 FGFR4,NSD1
SE_02_028500320 chr5:177084948-177091237 Sample_02_0285 Liver HuH7_untreat 320 1 145 22 3 48 527 FGFR4,NSD1
SE_00_003500704 chr5:177085281-177101136 Sample_00_0035 Sigmoid colon sigmoid-colon 704 6 459 41 6 147 1765 FGFR4,NSD1
SE_02_028600619 chr5:177085297-177096720 Sample_02_0286 Liver HuH7_IL-1alpha_1h 619 2 318 33 5 111 1419 FGFR4,NSD1
SE_02_004400473 chr5:177085983-177099145 Sample_02_0044 Embryo endodermal CyT49_ES_D5 473 3 384 35 5 133 1765 FGFR4,NSD1
SE_02_001500350 chr5:177086695-177106392 Sample_02_0015 Liver HepG2_shNS 350 5 627 68 6 151 1765 FGFR4,NSD1
SE_02_038000096 chr5:177086796-177110962 Sample_02_0380 Skeletal muscle RH18 96 2 787 95 7 151 1725 FGFR4,NSD1
SE_02_036400173 chr5:177086812-177112388 Sample_02_0364 Skeletal muscle CTR 173 1 817 102 7 154 1717 FGFR4,NSD1
SE_02_036900201 chr5:177086830-177108393 Sample_02_0369 Skeletal muscle RD 201 3 707 86 7 151 1712 FGFR4,NSD1
SE_02_037900201 chr5:177086830-177108393 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 201 3 707 86 7 151 1712 FGFR4,NSD1
SE_02_037100049 chr5:177086832-177112077 Sample_02_0371 Skeletal muscle RH5 49 2 812 99 7 154 1710 FGFR4,NSD1
SE_02_037000120 chr5:177086851-177110937 Sample_02_0370 Skeletal muscle RH4 120 2 787 95 7 151 1700 FGFR4,NSD1
SE_02_037200303 chr5:177086853-177117852 Sample_02_0372 Skeletal muscle RMS008 303 4 961 118 10 159 1700 FGFR4,NSD1
SE_02_037800024 chr5:177086862-177112326 Sample_02_0378 Skeletal muscle SCMC 24 2 816 102 7 154 1694 FGFR4,NSD1
SE_00_002500660 chr5:177086871-177117602 Sample_00_0025 Muscle of leg muscle-of-leg 660 9 956 118 10 159 1694 FGFR4,NSD1
SE_02_074100069 chr5:177086892-177108264 Sample_02_0741 Muscle RH30 69 6 702 86 7 151 1690 FGFR4,NSD1
SE_00_002600342 chr5:177087134-177117251 Sample_00_0026 Muscle of trunk muscle-of-trunk 342 8 940 115 10 154 1622 FGFR4,NSD1
SE_02_044300274 chr5:177088292-177107445 Sample_02_0443 Bone MG63 274 11 645 71 7 138 1587 FGFR4,NSD1
SE_02_155300708 chr5:177091507-177117588 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 708 16 836 98 7 117 1218 FGFR4,NSD1
SE_02_037500223 chr5:177093400-177117618 Sample_02_0375 Skeletal muscle RMS216 223 10 785 94 6 105 834 FGFR4,NSD1
SE_02_037300309 chr5:177093463-177111316 Sample_02_0373 Skeletal muscle RMS206 309 5 618 71 3 96 825 FGFR4,NSD1
SE_02_156500458 chr5:177093616-177111911 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 458 7 615 72 3 89 783 FGFR4,NSD1
SE_02_108000437 chr5:177093694-177107331 Sample_02_1080 Muscle JR1 shCtrl 437 6 474 50 2 84 767 FGFR4,NSD1
SE_02_108100159 chr5:177094062-177111315 Sample_02_1081 Muscle CTR shCtrl 159 10 587 71 3 84 721 FGFR4,NSD1
SE_02_037700072 chr5:177094951-177112260 Sample_02_0377 Skeletal muscle RMS238 72 6 587 75 2 86 721 FGFR4,NSD1
SE_02_037600149 chr5:177096299-177106609 Sample_02_0376 Skeletal muscle RMS237 149 2 367 41 1 62 447 FGFR4,NSD1
Genomic distribution of SEs associated with FGFR4
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The strength of the tissue affected by the gene

Expression of FGFR4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)