Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000187741
Gene: FANCA Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:89737549-89816657 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111200548 chr16:89728356-89812961 Sample_02_1112 T lymphocyte THP-6 T-ALL 548 30 3963 692 23 113 3156 ZNF276,FANCA,SPATA2L,SPIRE2,VPS9D1,CDK10,VPS9D1-AS1
SE_02_103200301 chr16:89742046-89797875 Sample_02_1032 Head and neck SCC1 JQ1 301 13 2573 480 16 54 1794 FANCA,SPATA2L,SPIRE2,ZNF276,VPS9D1,VPS9D1-AS1
SE_02_138300486 chr16:89764880-89822474 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 486 20 2624 379 17 60 1889 FANCA,SPIRE2,ZNF276,VPS9D1
SE_02_110500843 chr16:89778990-89848431 Sample_02_1105 Brain NBL-S 843 18 2927 408 15 73 1730 SPIRE2,FANCA,TCF25
SE_02_122901344 chr16:89779794-89819420 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1344 8 1823 252 12 32 1292 FANCA,SPIRE2,TCF25
SE_02_031300276 chr16:89786177-89824328 Sample_02_0313 Neuroblastoma SK-N-DZ 276 7 1715 223 9 28 1057 FANCA,TCF25,SPIRE2
SE_02_012400274 chr16:89798467-89839184 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 274 9 1694 211 7 49 1045 SPIRE2,FANCA,TCF25
SE_02_103500701 chr16:89814605-89817619 Sample_02_1035 Mammary gland HCC70_Vehicle 701 1 128 14 0 4 301 FANCA,SPIRE2
SE_02_103600486 chr16:89814653-89817653 Sample_02_1036 Mammary gland HCC70_XY018 486 1 128 14 0 4 294 FANCA,SPIRE2
SE_02_077500881 chr16:89819274-89825845 Sample_02_0775 Pancreas EndoC-BH1_SE 881 1 240 27 1 3 0 TCF25,SPIRE2,FANCA

Genomic distribution of SEs associated with FANCA

The strength of the tissue affected by the gene


Expression of FANCA