SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000099617
Gene: EFNA2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:1285873-1301431 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500588 chr19:1282265-1350907 Sample_02_0775 Pancreas EndoC-BH1_SE 588 28 2535 105 3 108 937 EFNA2,C19ORF24,MUM1,CIRBP,CIRBP-AS1,ATP5D,CBARP,MIDN,NDUFS7
SE_02_027700261 chr19:1282564-1297014 Sample_02_0277 Retina FW18 261 1 480 13 1 33 389 EFNA2,CIRBP,C19ORF23,ATP5D,C19ORF26,MIDN,C19ORF24
SE_02_027500589 chr19:1282599-1296111 Sample_02_0275 Retina FW14 589 1 458 13 1 33 389 EFNA2,CIRBP,C19ORF23,ATP5D,C19ORF26,MIDN,C19ORF24
SE_00_003500680 chr19:1282680-1288526 Sample_00_0035 Sigmoid colon sigmoid-colon 680 1 191 8 1 26 173 EFNA2,CIRBP,C19ORF23,ATP5D,C19ORF26,MIDN,C19ORF24
SE_00_003601168 chr19:1283132-1305063 Sample_00_0036 Small intestine small-intestine_108days 1168 4 732 25 2 60 937 EFNA2,CIRBP,C19ORF23,ATP5D,C19ORF26,MIDN,C19ORF24,MUM1
SE_00_004900521 chr19:1283221-1291719 Sample_00_0049 Small intestine small intestine 30y 521 3 300 9 1 22 173 EFNA2,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,CBARP,MIDN,GAMT,STK11,RPS15,GPX4,SBNO2,DAZAP1,NDUFS7,MUM1,C19orf26
SE_02_153900413 chr19:1290634-1334491 Sample_02_1539 Nasopharyngeal C666-1 413 13 1564 65 2 79 764 EFNA2,C19ORF24,MUM1,CIRBP,CIRBP-AS1,ATP5D,MIDN,NDUFS7
SE_02_096200860 chr19:1301595-1331839 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 860 6 1130 56 1 46 0 C19ORF24,MUM1,CIRBP,CIRBP-AS1,EFNA2
Genomic distribution of SEs associated with EFNA2
Genome Browser

The strength of the tissue affected by the gene

Expression of EFNA2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)