SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000105662
Gene: CRTC1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:18683678-18782333 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002200789 chr19:18636136-18685022 Sample_00_0022 Lung lung_30y 789 6 1343 136 3 166 1080 KLHL26,CRTC1,CRLF1,TMEM59L,C19ORF60
SE_02_103600373 chr19:18639026-18795869 Sample_02_1036 Mammary gland HCC70_XY018 373 52 4597 354 6 271 5575 CRTC1,COMP,KLHL26,CRLF1,UPF1,TMEM59L
SE_02_115100117 chr19:18639094-18809482 Sample_02_1151 Mammary gland MCF-7_UNTR 117 58 5014 374 6 271 5575 CRTC1,COMP,KLHL26,CRLF1,UPF1,TMEM59L
SE_01_009300658 chr19:18643544-18678060 Sample_01_0093 Aorta ascending aorta 658 9 1007 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_007300184 chr19:18643635-18678774 Sample_01_0073 Coronary artery coronary-artery 184 5 1021 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_119400576 chr19:18643656-18678011 Sample_02_1194 Brain GBM28 576 13 1002 96 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_008800496 chr19:18643693-18678810 Sample_01_0088 Tibial nerve tibial-nerve 496 6 1022 98 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_119100916 chr19:18643957-18678810 Sample_02_1191 Brain GBM25 916 12 1017 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_008101038 chr19:18644017-18678643 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 1038 7 1014 96 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_105000615 chr19:18644045-18678944 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 615 11 1020 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_007500966 chr19:18644253-18678760 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 966 8 1012 96 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_009200659 chr19:18644285-18678547 Sample_01_0092 Vagina vagina 659 9 1006 96 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_005600967 chr19:18644343-18678908 Sample_02_0056 Mammary gland HMEC 967 6 1017 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_061400868 chr19:18644344-18678177 Sample_02_0614 Liposarcoma MLPS_T2 868 11 999 95 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_119900179 chr19:18644362-18678638 Sample_02_1199 Brain GBM35 179 9 1010 96 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_142700156 chr19:18644481-18678807 Sample_02_1427 Shoulder fibroblast_343 156 11 1010 97 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_138500130 chr19:18644500-18788801 Sample_02_1385 Other iPSCs 130 41 4265 321 6 271 4941 CRTC1,COMP,KLHL26,CRLF1,UPF1,TMEM59L
SE_02_053300586 chr19:18644528-18676339 Sample_02_0533 Blood vessel Circle of Willis_54y 586 15 939 89 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_142800838 chr19:18644540-18678133 Sample_02_1428 Shoulder fibroblast_316 838 7 995 95 1 137 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_143300744 chr19:18644604-18768878 Sample_02_1433 Bone A673 STAG2 null 744 41 3686 294 5 271 2109 CRTC1,KLHL26,COMP,CRLF1,TMEM59L
SE_02_101701936 chr19:18644799-18679222 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1936 11 1010 97 1 136 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_116000579 chr19:18645005-18677776 Sample_02_1160 Embryo H1_shLuc 579 8 969 94 1 133 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_155301106 chr19:18645099-18678254 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1106 10 981 94 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_114500337 chr19:18645194-18680150 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 337 16 1032 98 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_127800666 chr19:18645211-18680470 Sample_02_1278 Chordoma UCH1_DMSO_48h 666 11 1036 98 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_155401016 chr19:18646642-18676144 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 1016 4 887 84 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_110100116 chr19:18646684-18777416 Sample_02_1101 Brain KELLY 116 60 3910 302 5 266 2611 CRTC1,KLHL26,COMP,CRLF1,TMEM59L
SE_02_053900132 chr19:18647006-18777688 Sample_02_0539 Brain SK-N-BE_2_-C_GFP_control 132 51 3908 302 5 266 2699 CRTC1,KLHL26,COMP,CRLF1,TMEM59L
SE_02_017100551 chr19:18648127-18678789 Sample_02_0171 Lung IMR-90_proliferating 551 6 921 89 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_01_011500518 chr19:18648427-18678676 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 518 8 912 87 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L,C19orf60
SE_02_086800767 chr19:18649109-18678847 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 767 10 892 85 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_086700728 chr19:18649158-18679516 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 728 15 908 86 1 132 762 KLHL26,CRTC1,CRLF1,TMEM59L
SE_02_110000076 chr19:18655970-18775437 Sample_02_1100 Brain COG-N-415 76 44 3577 272 5 260 2371 CRTC1,KLHL26,COMP,CRLF1,TMEM59L
SE_02_078000680 chr19:18657365-18681699 Sample_02_0780 Liver SMMC-7721 680 4 726 68 1 126 762 KLHL26,CRTC1,TMEM59L
SE_02_104300935 chr19:18686724-18717928 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 935 13 910 73 4 4 0 CRTC1,KLHL26
SE_02_110900183 chr19:18690162-18768511 Sample_02_1109 Brain SK-N-FI 183 22 2408 177 4 108 1068 CRTC1,COMP
SE_02_066300153 chr19:18694757-18768463 Sample_02_0663 Thyroid TT 153 20 2272 167 2 108 1058 CRTC1,COMP
SE_02_155300410 chr19:18695004-18747497 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 410 20 1638 134 2 80 480 CRTC1,COMP
SE_02_110500191 chr19:18695552-18776004 Sample_02_1105 Brain NBL-S 191 31 2482 177 2 108 1590 CRTC1,COMP
SE_02_104603433 chr19:18695989-18710512 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3433 7 430 41 2 4 0 CRTC1
SE_02_143201652 chr19:18696019-18768832 Sample_02_1432 Bone A673 STAG2 WT 1652 30 2240 163 2 108 1175 CRTC1,COMP
SE_02_054000149 chr19:18696132-18777862 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 149 27 2516 176 2 108 1825 CRTC1,COMP
SE_02_138400265 chr19:18696211-18746986 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 265 18 1584 130 2 73 417 CRTC1,COMP
SE_02_104800554 chr19:18696215-18736575 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 554 11 1228 109 2 14 0 CRTC1
SE_02_104701051 chr19:18696952-18701581 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1051 1 150 13 0 4 0 CRTC1
SE_02_108200669 chr19:18699205-18745936 Sample_02_1082 Retina retina 669 17 1456 123 2 66 327 CRTC1,COMP
SE_02_027500359 chr19:18699334-18769734 Sample_02_0275 Retina FW14 359 10 2176 155 2 104 1213 CRTC1,COMP
SE_02_155400195 chr19:18699425-18763142 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 195 20 1970 144 2 104 905 CRTC1,COMP
SE_02_155900303 chr19:18699704-18747658 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 303 12 1504 123 2 76 480 CRTC1,COMP
SE_02_030000217 chr19:18699999-18768914 Sample_02_0300 Neuroblastoma CLB-PE 217 9 2127 154 2 104 1194 CRTC1,COMP
SE_02_054400204 chr19:18700361-18778405 Sample_02_0544 Brain Kelly_ResVeh 204 23 2404 164 2 104 1935 CRTC1,COMP
SE_02_110600228 chr19:18700646-18776309 Sample_02_1106 Brain NGP 228 33 2339 163 2 104 1596 CRTC1,COMP
SE_02_054300172 chr19:18700717-18785814 Sample_02_0543 Brain Kelly_vehicle 172 26 2611 177 3 104 3494 CRTC1,COMP,UPF1
SE_02_116000520 chr19:18715734-18750604 Sample_02_1160 Embryo H1_shLuc 520 7 1124 88 0 78 563 CRTC1,COMP
SE_02_031500279 chr19:18716774-18744425 Sample_02_0315 Neuroblastoma TR14 279 5 883 77 0 37 240 CRTC1,COMP
SE_02_042100243 chr19:18716938-18771960 Sample_02_0421 Brain BE2C_3 243 8 1712 113 0 104 1331 CRTC1,COMP
SE_02_110400613 chr19:18716942-18769363 Sample_02_1104 Brain NB-69 613 15 1639 110 0 104 1213 CRTC1,COMP
SE_02_123500370 chr19:18717077-18745413 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 370 14 904 77 0 47 240 CRTC1,COMP
SE_02_106300285 chr19:18717263-18768468 Sample_02_1063 Brain CLB-GA-control 285 19 1601 110 0 104 1058 CRTC1,COMP
SE_02_150000489 chr19:18717263-18768535 Sample_02_1500 Brain KELLY_untreat 489 17 1603 110 0 104 1072 CRTC1,COMP
SE_02_021600936 chr19:18719058-18742755 Sample_02_0216 Skin NHEK_scramble 936 6 759 70 0 24 6 CRTC1,COMP
SE_02_106400337 chr19:18719164-18768459 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 337 12 1545 105 0 104 1058 CRTC1,COMP
SE_02_075300603 chr19:18722997-18743458 Sample_02_0753 Embryo ES-derived progenitors_FG type 603 8 668 61 0 34 121 CRTC1,COMP
SE_02_027800399 chr19:18723248-18747419 Sample_02_0278 Retina FW24 399 3 807 62 0 76 480 CRTC1,COMP
SE_02_075700880 chr19:18723774-18744178 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 880 8 672 57 0 35 185 CRTC1,COMP
SE_02_075600668 chr19:18724007-18750259 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 668 5 852 63 0 78 563 CRTC1,COMP
SE_02_020700254 chr19:18724208-18742820 Sample_02_0207 Stomach FU97 254 7 603 54 0 24 14 CRTC1,COMP
SE_02_098900897 chr19:18726168-18769926 Sample_02_0989 Kidney kidney cortex_WT 897 15 1365 81 0 104 1213 CRTC1,COMP
SE_02_004800546 chr19:18730644-18744703 Sample_02_0048 Embryo endodermal CyT49_HE 546 3 463 39 0 37 240 CRTC1,COMP
SE_02_004900465 chr19:18730880-18744609 Sample_02_0049 Embryo endodermal CyT49_GTtoH 465 3 454 39 0 37 240 CRTC1,COMP
SE_02_004500571 chr19:18731652-18744285 Sample_02_0045 Embryo endodermal CyT49_ES_D7 571 3 423 39 0 35 223 CRTC1,COMP
SE_02_077501158 chr19:18732465-18739431 Sample_02_0775 Pancreas EndoC-BH1_SE 1158 1 222 28 0 11 0 CRTC1
SE_02_004600403 chr19:18732990-18744350 Sample_02_0046 Embryo endodermal CyT49_ES_D10 403 2 371 34 0 36 240 CRTC1,COMP
SE_02_120100351 chr19:18733117-18777873 Sample_02_1201 Brain GBM37 351 9 1388 80 0 104 1830 CRTC1,COMP
SE_02_034000411 chr19:18733992-18768834 Sample_02_0340 Brain BE2C_2 411 5 1079 64 0 99 1176 CRTC1,COMP
SE_00_003601353 chr19:18736396-18744378 Sample_00_0036 Small intestine small-intestine_108days 1353 1 271 21 0 26 240 CRTC1,COMP
SE_00_002001336 chr19:18736402-18744453 Sample_00_0020 Large intestine large-intestine_108d 1336 1 272 21 0 27 240 CRTC1,COMP
Genomic distribution of SEs associated with CRTC1
Genome Browser

The strength of the tissue affected by the gene

Expression of CRTC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)