Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000073464
Gene: CLCN4 Gene type: protein_coding
Strand: + External links:
Genomic region: chrX:10156975-10237660 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_156000175 chrX:10074827-10126265 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 175 20 1194 30 1 0 1020 WWC3,CLCN4
SE_02_078300255 chrX:10077120-10122814 Sample_02_0783 Blood MEC2 255 14 1020 21 1 0 783 WWC3,CLCN4
SE_02_155600150 chrX:10077322-10122488 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 150 19 1007 21 1 0 743 WWC3,CLCN4
SE_02_155900113 chrX:10077629-10122989 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 113 19 1014 22 1 0 799 WWC3,CLCN4
SE_02_155400189 chrX:10077962-10122790 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 189 19 1002 21 1 0 779 WWC3,CLCN4
SE_02_122700811 chrX:10078957-10119478 Sample_02_1227 Bone marrow U266 811 12 876 18 1 0 672 WWC3,CLCN4
SE_02_121900256 chrX:10081965-10124184 Sample_02_1219 Bone marrow H929 256 10 954 24 1 0 735 WWC3,CLCN4
SE_02_078200447 chrX:10082164-10123155 Sample_02_0782 Blood MEC1 447 6 919 23 1 0 721 WWC3,CLCN4
SE_01_006700291 chrX:10082304-10122769 Sample_01_0067 Peritoneal effusion: derived from metastatic site: peritoneal cavity SUDHL6 291 4 911 21 1 0 700 WWC3,CLCN4
SE_02_045400715 chrX:10082323-10119431 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 715 10 801 18 1 0 631 WWC3,CLCN4
SE_01_005500574 chrX:10082420-10122231 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 574 7 894 21 1 0 662 WWC3,CLCN4
SE_02_115700334 chrX:10082818-10122674 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 334 19 894 21 1 0 690 WWC3,CLCN4
SE_01_009600315 chrX:10096713-10122486 Sample_01_0096 B-cell lymphoma DOHH2 315 6 622 16 1 0 454 WWC3,CLCN4
SE_02_122300281 chrX:10096860-10124508 Sample_02_1223 Bone marrow KMS28BM 281 9 679 19 1 0 598 WWC3,CLCN4
SE_02_125000152 chrX:10096976-10123032 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 152 19 626 17 1 0 510 WWC3,CLCN4
SE_02_036200552 chrX:10096996-10123375 Sample_02_0362 Haematopoietic and lymphoid tissue REH 552 4 636 18 1 0 510 WWC3,CLCN4
SE_02_028800669 chrX:10097192-10122835 Sample_02_0288 Tonsil CB5_H3K27Ac 669 4 617 16 1 0 495 WWC3,CLCN4
SE_02_036000142 chrX:10097197-10122823 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 142 7 617 16 1 0 494 WWC3,CLCN4
SE_02_124900149 chrX:10097230-10122797 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 149 17 617 16 1 0 493 WWC3,CLCN4
SE_02_122400879 chrX:10097378-10122549 Sample_02_1224 Bone marrow normal plasma cell 879 19 607 16 1 0 458 WWC3,CLCN4
SE_02_158500412 chrX:10097538-10122734 Sample_02_1585 Blood SupB15 DMSO 412 19 609 16 1 0 486 WWC3,CLCN4
SE_02_036300528 chrX:10097608-10123355 Sample_02_0363 Haematopoietic and lymphoid tissue 697 528 3 620 18 1 0 510 WWC3,CLCN4
SE_02_155800151 chrX:10097829-10123248 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 151 13 613 18 1 0 510 WWC3,CLCN4
SE_00_005601200 chrX:10097915-10121836 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1200 16 578 16 1 0 451 WWC3,CLCN4
SE_02_158600408 chrX:10097916-10121702 Sample_02_1586 Blood SupB15 ACY1035 408 8 569 16 1 0 451 WWC3,CLCN4
SE_02_002500536 chrX:10097920-10122607 Sample_02_0025 Blood CD19donorA 536 10 596 16 1 0 468 WWC3,CLCN4
SE_02_111900583 chrX:10102891-10124478 Sample_02_1119 Blood KBM7 583 13 565 16 1 0 549 WWC3,CLCN4
SE_00_000500528 chrX:10105226-10123119 Sample_00_0005 Blood B-cell 528 4 487 15 1 0 465 WWC3,CLCN4
SE_02_115600562 chrX:10105592-10122503 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 562 10 467 12 1 0 409 WWC3,CLCN4
SE_02_038300020 chrX:10108095-10121900 Sample_02_0383 Blood Ik6pre-BALL+TET-emptyvector 20 2 411 11 0 0 406 WWC3,CLCN4
SE_02_044600720 chrX:10137307-10192769 Sample_02_0446 Bone osteosarcoma tumor P2 720 15 1152 120 1 12 938 WWC3,CLCN4
SE_02_108200860 chrX:10146147-10190191 Sample_02_1082 Retina retina 860 17 904 104 1 12 343 CLCN4
SE_01_007600874 chrX:10155010-10189763 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 874 3 706 83 0 12 343 CLCN4
SE_02_043100493 chrX:10155863-10184800 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 493 3 589 72 0 0 220 CLCN4
SE_02_146800365 chrX:10156000-10190527 Sample_02_1468 Blood HUDEP-2_WT 365 6 708 80 0 12 343 CLCN4
SE_02_136300311 chrX:10156154-10180282 Sample_02_1363 Blood Hudep2 311 8 487 56 0 0 220 CLCN4
SE_02_001600490 chrX:10156191-10180679 Sample_02_0016 Blood erythroblasts 490 4 491 56 0 0 220 CLCN4
SE_02_109600426 chrX:10156228-10180554 Sample_02_1096 Blood CD34 Erythroid cells_Don003 426 5 489 55 0 0 220 CLCN4
SE_02_146700508 chrX:10156243-10189746 Sample_02_1467 Blood HUDEP-2_LRFKO 508 5 688 77 0 12 343 CLCN4
SE_02_146600457 chrX:10156276-10189674 Sample_02_1466 Blood HUDEP-2_BCL11AKO 457 5 687 77 0 12 343 CLCN4
SE_02_109500460 chrX:10156277-10180419 Sample_02_1095 Blood CD34 Erythroid cells_Don002 460 5 487 55 0 0 220 CLCN4
SE_02_101800296 chrX:10156319-10180413 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 296 12 485 54 0 0 220 CLCN4
SE_02_044400493 chrX:10156399-10193066 Sample_02_0444 Bone osteosarcoma tumor P10 493 11 747 79 0 12 343 CLCN4
SE_02_075001107 chrX:10189941-10233447 Sample_02_0750 Lymphoma Rec-1_GSI 1107 16 859 48 1 108 723 CLCN4
SE_02_150301107 chrX:10280102-10297609 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1107 8 334 7 0 0 0 CLCN4
SE_02_150100997 chrX:10281045-10297475 Sample_02_1501 Brain SHEP-21N_NOSPIKE 997 9 309 6 0 0 0 CLCN4
SE_02_150300521 chrX:10314899-10361228 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 521 19 983 68 1 0 0 CLCN4
SE_02_149800622 chrX:10316536-10337565 Sample_02_1498 Brain SHEP-21N_DOX_2h 622 6 452 19 1 0 0 CLCN4
SE_02_150200900 chrX:10317856-10360878 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 900 11 921 67 1 0 0 CLCN4
SE_02_149700541 chrX:10318439-10337239 Sample_02_1497 Brain SHEP-21N 541 5 411 18 0 0 0 CLCN4
SE_02_150100639 chrX:10318835-10337379 Sample_02_1501 Brain SHEP-21N_NOSPIKE 639 8 408 19 1 0 0 CLCN4

Genomic distribution of SEs associated with CLCN4

The strength of the tissue affected by the gene


Expression of CLCN4