SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000101290
Gene: CDS2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:5126879-5197887 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077502318 chr20:5121987-5134838 Sample_02_0775 Pancreas EndoC-BH1_SE 2318 3 353 39 1 30 341 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_091400195 chr20:5122493-5198884 Sample_02_0914 Heart left ventricle_DCM_LV1342 195 28 2221 172 16 142 2320 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_120500713 chr20:5122748-5176035 Sample_02_1205 Brain NB3 713 21 1529 128 11 64 505 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_089700157 chr20:5122772-5203532 Sample_02_0897 Heart left ventricle_LV1325 157 40 2360 200 17 140 2320 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_091000287 chr20:5122860-5203086 Sample_02_0910 Heart left ventricle_DCM_LV1275 287 42 2342 199 17 140 2320 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_090700339 chr20:5122870-5203577 Sample_02_0907 Heart left ventricle_DCM_LV1223 339 36 2361 200 17 140 2320 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_090800242 chr20:5122879-5203609 Sample_02_0908 Heart left ventricle_DCM_LV1262 242 43 2362 200 17 140 2320 PCNA,CDS2,PCNA-AS1,TMEM230
SE_01_007600928 chr20:5125285-5174296 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 928 5 1407 123 11 59 419 PCNA,CDS2,PCNA-AS1,C20ORF30
SE_01_008200434 chr20:5125506-5216746 Sample_01_0082 Right lobe of liver right-lobe-of-liver 434 17 2651 233 19 150 2320 PCNA,CDS2,PCNA-AS1,C20ORF30
SE_01_008600554 chr20:5125509-5192742 Sample_01_0086 Thoracic aorta thoracic-aorta 554 8 1960 156 15 119 1537 PCNA,CDS2,PCNA-AS1,C20ORF30
SE_02_032500787 chr20:5125538-5157873 Sample_02_0325 Liver hepatocytes_d1 787 6 896 74 4 39 341 PCNA,CDS2,PCNA-AS1,C20ORF30
SE_01_007000636 chr20:5125584-5192498 Sample_01_0070 Ascending aorta ascending-aorta 636 9 1946 154 15 119 1520 PCNA,CDS2,PCNA-AS1,C20ORF30
SE_02_118100232 chr20:5126065-5177739 Sample_02_1181 Brain GBM10 232 18 1488 125 12 72 620 PCNA,CDS2,PCNA-AS1,TMEM230
SE_02_090900209 chr20:5126722-5203069 Sample_02_0909 Heart left ventricle_DCM_LV1264 209 33 2241 193 17 137 2264 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_088900333 chr20:5126758-5203441 Sample_02_0889 Heart left ventricle_LV1183 333 28 2254 194 17 137 2246 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_090300262 chr20:5126800-5203150 Sample_02_0903 Heart left ventricle_DCM_LV1009 262 24 2242 193 17 135 2240 CDS2,PCNA-AS1,PCNA,TMEM230
SE_00_003300280 chr20:5126804-5173577 Sample_00_0033 Psoas muscle psoas-muscle_3y 280 8 1343 117 11 52 286 CDS2,PCNA,PCNA-AS1,C20ORF30
SE_02_090400439 chr20:5126808-5203114 Sample_02_0904 Heart left ventricle_DCM_LV1028 439 26 2239 193 17 135 2240 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_090500249 chr20:5126808-5203121 Sample_02_0905 Heart left ventricle_DCM_LV1033 249 27 2240 193 17 135 2240 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089200280 chr20:5126810-5203252 Sample_02_0892 Heart left ventricle_LV1215 280 36 2246 193 17 135 2240 CDS2,PCNA-AS1,PCNA,TMEM230
SE_01_009300519 chr20:5126812-5192364 Sample_01_0093 Aorta ascending aorta 519 21 1911 150 15 116 1426 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089800541 chr20:5126813-5199087 Sample_02_0898 Heart left ventricle_LV1356 541 29 2117 168 17 135 2240 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_090000441 chr20:5126828-5203161 Sample_02_0900 Heart left ventricle_LV1452 441 27 2241 193 17 135 2233 CDS2,PCNA-AS1,PCNA,TMEM230
SE_01_009800362 chr20:5126836-5203359 Sample_01_0098 Heart left ventricle_51y 362 28 2251 194 17 135 2228 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091200317 chr20:5126837-5199328 Sample_02_0912 Heart left ventricle_DCM_LV1300 317 27 2122 168 17 135 2227 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091301415 chr20:5126846-5154362 Sample_02_0913 Heart left ventricle_DCM_LV1304 1415 12 771 66 4 35 245 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_088700224 chr20:5126850-5203075 Sample_02_0887 Heart left ventricle_LV1121 224 33 2239 193 17 135 2223 CDS2,PCNA-AS1,PCNA,TMEM230
SE_01_009400870 chr20:5126854-5199076 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 870 16 2117 168 17 135 2223 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089100276 chr20:5126858-5203131 Sample_02_0891 Heart left ventricle_LV1202 276 39 2240 193 17 135 2223 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091900951 chr20:5126860-5155805 Sample_02_0919 Heart left ventricle_DCM_LV1532 951 12 809 68 4 36 244 CDS2,PCNA-AS1,PCNA,TMEM230
SE_00_005200883 chr20:5126882-5198383 Sample_00_0052 Heart left ventricle 3y 883 14 2094 165 16 135 2214 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_122400444 chr20:5126893-5197120 Sample_02_1224 Bone marrow normal plasma cell 444 35 2061 161 16 124 2071 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089400133 chr20:5126894-5198964 Sample_02_0894 Heart left ventricle_LV1248 133 18 2112 167 16 135 2209 CDS2,PCNA-AS1,PCNA,TMEM230
SE_01_011000439 chr20:5126899-5192369 Sample_01_0110 Aorta thoracic aorta_37y 439 22 1914 151 15 116 1394 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_141000834 chr20:5126910-5176629 Sample_02_1410 Brain GSC6 834 10 1434 122 11 59 475 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_053300525 chr20:5126916-5183173 Sample_02_0533 Blood vessel Circle of Willis_54y 525 24 1618 137 14 78 623 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_095600072 chr20:5126921-5177371 Sample_02_0956 Brain IDH1_2658 72 27 1460 122 11 65 501 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089600237 chr20:5126941-5203649 Sample_02_0896 Heart left ventricle_LV1294 237 37 2258 194 17 133 2197 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091700255 chr20:5126974-5199142 Sample_02_0917 Heart left ventricle_DCM_LV1433 255 30 2118 168 17 133 2190 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091800207 chr20:5126984-5199126 Sample_02_0918 Heart left ventricle_DCM_LV1437 207 22 2116 168 17 133 2184 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089300292 chr20:5126987-5203763 Sample_02_0893 Heart left ventricle_LV1226 292 22 2259 192 17 133 2182 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_092000218 chr20:5126996-5198271 Sample_02_0920 Heart left ventricle_DCM_LV1535 218 26 2090 162 16 133 2181 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_090100688 chr20:5128248-5198876 Sample_02_0901 Heart left ventricle_LV1471 688 27 2078 161 16 121 2047 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_130400860 chr20:5128454-5178037 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 860 21 1441 118 12 55 328 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_091100386 chr20:5128712-5202902 Sample_02_0911 Heart left ventricle_DCM_LV1290 386 34 2181 182 17 120 1999 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_143200784 chr20:5129621-5222685 Sample_02_1432 Bone A673 STAG2 WT 784 35 2747 231 19 134 1979 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_119400524 chr20:5130577-5176433 Sample_02_1194 Brain GBM28 524 16 1343 107 10 43 221 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_053400365 chr20:5131203-5180886 Sample_02_0534 Blood vessel Circle of Willis_60y 365 22 1444 114 12 59 344 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_121300845 chr20:5134034-5173125 Sample_02_1213 Brain GBM31 845 21 1124 85 10 30 0 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_119801029 chr20:5134058-5173011 Sample_02_1198 Brain GBM34 1029 14 1115 84 10 30 0 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_097900781 chr20:5134754-5176330 Sample_02_0979 Brain JN14-BS1_H3.3K27M 781 12 1203 89 10 35 208 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_101701747 chr20:5135604-5192535 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1747 13 1666 116 14 92 1181 CDS2,PCNA-AS1,PCNA,TMEM230,SLC23A2
SE_02_138800815 chr20:5140342-5169511 Sample_02_1388 Peripheral blood JB6_ALK+ 815 5 797 58 6 16 0 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_122700564 chr20:5142914-5172807 Sample_02_1227 Bone marrow U266 564 13 852 66 10 23 0 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_155900537 chr20:5143702-5192423 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 537 14 1431 99 14 89 1173 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089900645 chr20:5148379-5203083 Sample_02_0899 Heart left ventricle_LV1400 645 16 1636 134 14 108 1979 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_089000509 chr20:5149700-5203320 Sample_02_0890 Heart left ventricle_LV1200 509 17 1604 132 13 108 1979 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_153700524 chr20:5150756-5182678 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 524 7 927 75 10 50 378 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_153500270 chr20:5150918-5181841 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 270 6 903 74 9 45 344 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_075800678 chr20:5159994-5178624 Sample_02_0758 Peripheral blood REH 678 8 572 53 7 35 279 CDS2,PCNA-AS1,PCNA,TMEM230
SE_02_158600381 chr20:5164022-5175479 Sample_02_1586 Blood SupB15 ACY1035 381 8 372 38 6 22 152 CDS2,PCNA-AS1,PCNA
SE_02_007800229 chr20:5164026-5172117 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 229 6 251 31 6 14 0 CDS2,PCNA,PCNA-AS1
SE_02_158500542 chr20:5164243-5176252 Sample_02_1585 Blood SupB15 DMSO 542 11 383 38 6 22 195 CDS2,PCNA-AS1,PCNA
SE_02_091600586 chr20:5164395-5198898 Sample_02_0916 Heart left ventricle_DCM_LV1392 586 14 1061 82 11 99 1979 CDS2,PCNA-AS1,PCNA
SE_02_091501018 chr20:5164562-5198504 Sample_02_0915 Heart left ventricle_DCM_LV1371 1018 13 1043 81 11 99 1979 CDS2,PCNA-AS1,PCNA
SE_02_091301131 chr20:5166871-5203429 Sample_02_0913 Heart left ventricle_DCM_LV1304 1131 15 1115 98 11 99 1979 CDS2,PCNA-AS1,PCNA
SE_02_090600978 chr20:5168586-5203543 Sample_02_0906 Heart left ventricle_DCM_LV1072 978 16 1076 93 11 93 1979 CDS2,PCNA-AS1,PCNA
SE_00_004600802 chr20:5168699-5203423 Sample_00_0046 Heart right ventricle_34y 802 19 1070 93 11 93 1979 CDS2,PCNA-AS1,PCNA
SE_02_091900787 chr20:5168707-5203121 Sample_02_0919 Heart left ventricle_DCM_LV1532 787 11 1058 92 11 93 1979 CDS2,PCNA-AS1,PCNA
SE_02_032501261 chr20:5170740-5216717 Sample_02_0325 Liver hepatocytes_d1 1261 8 1372 119 10 104 1979 CDS2,PCNA
SE_02_122700573 chr20:5189695-5198996 Sample_02_1227 Bone marrow U266 573 1 285 23 1 36 1148 CDS2
SE_02_035900174 chr20:5192667-5224165 Sample_02_0359 Colon Colo741 174 4 941 94 5 36 791 CDS2
SE_02_111000673 chr20:5347571-5366336 Sample_02_1110 Other HGrC1 673 6 494 10 1 22 0 PROKR2,CDS2
Genomic distribution of SEs associated with CDS2
Genome Browser

The strength of the tissue affected by the gene

Expression of CDS2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)