SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000118729
Gene: CASQ2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:115700021-115768714 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_089800428 chr1:115702714-115772078 Sample_02_0898 Heart left ventricle_LV1356 428 24 2159 306 6 167 604 CASQ2
SE_02_091000484 chr1:115704215-115772078 Sample_02_0910 Heart left ventricle_DCM_LV1275 484 27 2109 302 6 153 543 CASQ2
SE_00_005300376 chr1:115705476-115728634 Sample_00_0053 Embryo trophoblast cell originated from H1 376 11 695 62 1 62 169 CASQ2
SE_02_143400923 chr1:115705532-115719646 Sample_02_1434 Trophoblast trophoblast stem cells 923 2 439 40 1 41 61 CASQ2
SE_02_143500744 chr1:115705549-115719456 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 744 3 435 40 1 40 61 CASQ2
SE_02_046501436 chr1:115707472-115731339 Sample_02_0465 Adipose subcutaneous adipocytes 1436 7 709 65 2 63 169 CASQ2
SE_02_047600980 chr1:115708862-115729212 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 980 9 612 56 1 58 169 CASQ2
SE_02_024000640 chr1:115710369-115716321 Sample_02_0240 Colon V429_2 640 2 192 21 1 25 0 CASQ2
SE_02_062600110 chr1:115710477-115716391 Sample_02_0626 Mammary gland WS8_E2 110 1 190 21 1 25 0 CASQ2
SE_02_062700099 chr1:115710490-115716452 Sample_02_0627 Mammary gland WS8_VEH 99 1 194 22 1 25 0 CASQ2
SE_02_062500106 chr1:115710494-115716952 Sample_02_0625 Mammary gland WS8_4OHT 106 1 213 23 1 25 0 CASQ2
SE_02_049600078 chr1:115710795-115714955 Sample_02_0496 Mammary gland C49R 78 4 133 18 0 17 0 CASQ2
SE_00_005200602 chr1:115727265-115771975 Sample_00_0052 Heart left ventricle 3y 602 22 1398 241 5 87 305 CASQ2
SE_02_090300742 chr1:115744153-115782660 Sample_02_0903 Heart left ventricle_DCM_LV1009 742 14 1163 195 5 69 152 CASQ2
SE_02_070701030 chr1:115746537-115750358 Sample_02_0707 Pancreas BxPC3 WT 1030 4 134 40 1 6 0 CASQ2
SE_02_091700888 chr1:115747610-115771867 Sample_02_0917 Heart left ventricle_DCM_LV1433 888 10 752 134 4 55 108 CASQ2
SE_01_011500192 chr1:115747903-115784177 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 192 13 1095 162 5 66 108 CASQ2
SE_00_002100601 chr1:115748089-115772047 Sample_00_0021 Lung lung_3y 601 4 737 129 4 56 108 CASQ2
SE_02_091200927 chr1:115748101-115772003 Sample_02_0912 Heart left ventricle_DCM_LV1300 927 9 735 128 4 56 108 CASQ2
SE_02_088901217 chr1:115748139-115772085 Sample_02_0889 Heart left ventricle_LV1183 1217 7 735 127 4 56 108 CASQ2
SE_02_091300838 chr1:115748145-115771975 Sample_02_0913 Heart left ventricle_DCM_LV1304 838 7 733 127 4 55 108 CASQ2
SE_02_090400840 chr1:115748175-115772066 Sample_02_0904 Heart left ventricle_DCM_LV1028 840 6 735 127 4 56 108 CASQ2
SE_02_091100790 chr1:115748211-115771963 Sample_02_0911 Heart left ventricle_DCM_LV1290 790 12 732 127 4 55 108 CASQ2
SE_02_088801193 chr1:115748224-115771942 Sample_02_0888 Heart left ventricle_LV1160 1193 10 731 127 4 55 108 CASQ2
SE_02_089300672 chr1:115748241-115771960 Sample_02_0893 Heart left ventricle_LV1226 672 7 731 127 4 55 108 CASQ2
SE_02_090701017 chr1:115748274-115772008 Sample_02_0907 Heart left ventricle_DCM_LV1223 1017 11 732 127 4 56 108 CASQ2
SE_02_090101041 chr1:115748276-115783099 Sample_02_0901 Heart left ventricle_LV1471 1041 19 1048 156 5 66 108 CASQ2
SE_02_090501067 chr1:115748290-115772036 Sample_02_0905 Heart left ventricle_DCM_LV1033 1067 7 733 127 4 56 108 CASQ2
SE_02_090601297 chr1:115748430-115771942 Sample_02_0906 Heart left ventricle_DCM_LV1072 1297 10 725 126 4 55 108 CASQ2
SE_00_002500481 chr1:115748557-115783877 Sample_00_0025 Muscle of leg muscle-of-leg 481 5 1070 155 5 66 108 CASQ2
SE_02_088700832 chr1:115748620-115772080 Sample_02_0887 Heart left ventricle_LV1121 832 12 720 123 4 56 108 CASQ2
SE_02_090901045 chr1:115748655-115771940 Sample_02_0909 Heart left ventricle_DCM_LV1264 1045 9 718 123 4 55 108 CASQ2
SE_01_009800814 chr1:115748690-115772019 Sample_01_0098 Heart left ventricle_51y 814 9 720 123 4 56 108 CASQ2
SE_02_089201333 chr1:115748761-115772020 Sample_02_0892 Heart left ventricle_LV1215 1333 11 718 123 4 55 108 CASQ2
SE_02_089400586 chr1:115748764-115771897 Sample_02_0894 Heart left ventricle_LV1248 586 7 715 123 4 54 108 CASQ2
SE_02_092201000 chr1:115748771-115772007 Sample_02_0922 Heart fetal heart_PCW10_12434 1000 5 716 123 4 55 108 CASQ2,VANGL1,NHLH2
SE_02_091801017 chr1:115748876-115771980 Sample_02_0918 Heart left ventricle_DCM_LV1437 1017 10 711 122 4 55 108 CASQ2
SE_02_053301290 chr1:115748903-115772223 Sample_02_0533 Blood vessel Circle of Willis_54y 1290 8 717 123 4 55 108 CASQ2
SE_02_089101150 chr1:115748906-115772022 Sample_02_0891 Heart left ventricle_LV1202 1150 10 713 122 4 55 108 CASQ2
SE_02_092500586 chr1:115749036-115772057 Sample_02_0925 Heart fetal heart_PCW17_12570 586 8 710 120 4 55 108 CASQ2,VANGL1,NHLH2
SE_02_046500938 chr1:115750526-115771845 Sample_02_0465 Adipose subcutaneous adipocytes 938 11 641 100 3 50 108 CASQ2
SE_02_037200351 chr1:115752510-115783376 Sample_02_0372 Skeletal muscle RMS008 351 4 908 120 2 58 108 CASQ2
SE_00_002600199 chr1:115752548-115784161 Sample_00_0026 Muscle of trunk muscle-of-trunk 199 5 933 121 2 58 108 CASQ2
SE_02_141300732 chr1:115753103-115771996 Sample_02_1413 Muscle RH4_sgBRG1 732 5 560 89 1 48 108 CASQ2
SE_02_092400817 chr1:115753122-115771968 Sample_02_0924 Heart fetal heart_PCW10_12569 817 4 560 89 1 47 108 CASQ2,VANGL1,NHLH2
SE_01_004500826 chr1:115771022-115795895 Sample_01_0045 Mammary gland mammary-epithelial-cell 826 3 728 71 4 38 0 NHLH2,CASQ2
SE_02_009900713 chr1:115771049-115795699 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 713 4 719 71 4 38 0 NHLH2,CASQ2
SE_02_136001069 chr1:115771184-115816419 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 1069 12 1373 105 5 112 0 NHLH2,CASQ2
SE_02_112100502 chr1:115771357-115796044 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 502 10 723 71 4 40 0 NHLH2,CASQ2,VANGL1
SE_02_026600144 chr1:115771421-115784269 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 144 4 369 33 1 11 0 CASQ2
SE_02_158401152 chr1:115771452-115784063 Sample_02_1584 Brain U87 GBM_Mock 1152 2 362 33 1 11 0 CASQ2
SE_00_002400822 chr1:115826783-115840064 Sample_00_0024 Embryo mesendoderm 822 2 326 30 2 127 306 NHLH2,CASQ2
Genomic distribution of SEs associated with CASQ2
Genome Browser

The strength of the tissue affected by the gene

Expression of CASQ2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)