SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000181004
Gene: BBS12 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:122732702-122744942 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_056900387 chr4:122729082-122800494 Sample_02_0569 Periodontal ligament mesenchymal stem cell 387 23 1797 170 6 90 519 BBS12,CETN4P,FGF2
SE_04_000200650 chr4:122731363-122780770 Sample_04_0002 Blood cold shocked K562 650 6 1202 112 6 83 490 BBS12,CETN4P,FGF2
SE_03_001300950 chr4:122731562-122799743 Sample_03_0013 Lung A549 950 7 1712 156 5 83 490 BBS12,CETN4P,FGF2
SE_02_103300202 chr4:122732635-122807131 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 202 15 1892 168 6 75 393 BBS12,CETN4P,FGF2
SE_02_138700505 chr4:122732692-122765837 Sample_02_1387 Peripheral blood Mac-1_ALK- 505 10 745 85 3 73 384 BBS12,CETN4P
SE_02_048100535 chr4:122733431-122799514 Sample_02_0481 Mammary gland MDA-MB231 535 11 1666 152 5 73 311 BBS12,CETN4P,FGF2
SE_02_139200551 chr4:122735099-122764796 Sample_02_1392 Peripheral blood Mac-2A_ALK- 551 12 681 80 3 67 277 BBS12,CETN4P
SE_02_057100739 chr4:122735137-122766179 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 739 10 708 82 3 72 277 BBS12,CETN4P
SE_02_057200527 chr4:122737825-122767243 Sample_02_0572 Brain LN229_1_mM_glucose 527 11 670 75 2 72 277 BBS12,CETN4P
SE_02_011100247 chr4:122738002-122799315 Sample_02_0111 Ovaries IOE4 247 11 1578 144 4 72 277 BBS12,CETN4P,FGF2
SE_02_011000076 chr4:122738182-122808427 Sample_02_0110 Ovaries IOE11 76 5 1807 160 5 73 277 BBS12,CETN4P,FGF2
SE_02_143600306 chr4:122738251-122811418 Sample_02_1436 Liver LSEC-Ctrl 306 20 1880 163 5 87 277 BBS12,CETN4P,FGF2
SE_02_026100220 chr4:122738335-122800756 Sample_02_0261 Osteoblastic hFOB_differentiated 220 8 1596 145 4 70 277 BBS12,CETN4P,FGF2
SE_02_026200149 chr4:122738356-122800241 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 149 9 1584 144 4 70 277 BBS12,CETN4P,FGF2
SE_02_156600352 chr4:122738414-122799949 Sample_02_1566 Dermal Dermal fibroblast 352 16 1573 143 4 70 277 BBS12,CETN4P,FGF2
SE_02_017200575 chr4:122738506-122811072 Sample_02_0172 Lung IMR-90_quiescent 575 9 1852 163 5 87 277 BBS12,CETN4P,FGF2
SE_02_143700313 chr4:122738585-122801051 Sample_02_1437 Liver LSEC-TNF 313 21 1595 146 4 70 277 BBS12,CETN4P,FGF2
SE_02_137800234 chr4:122738611-122800023 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 234 20 1570 143 4 70 277 BBS12,CETN4P,FGF2
SE_02_131100492 chr4:122738625-122800454 Sample_02_1311 Bone marrow HDMSCs 492 9 1583 145 4 70 277 BBS12,CETN4P,FGF2
SE_02_040200126 chr4:122738630-122799921 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 126 10 1567 143 4 70 277 BBS12,CETN4P,FGF2
SE_02_143800312 chr4:122738645-122811347 Sample_02_1438 Liver LSEC 312 16 1864 162 5 87 277 BBS12,CETN4P,FGF2
SE_02_017101053 chr4:122738660-122811120 Sample_02_0171 Lung IMR-90_proliferating 1053 9 1852 162 5 87 277 BBS12,CETN4P,FGF2
SE_02_157100074 chr4:122738681-122799534 Sample_02_1571 Fibroblast Fibroblast cells 74 10 1561 141 4 69 277 BBS12,CETN4P,FGF2
SE_01_001800446 chr4:122738698-122799719 Sample_01_0018 Submandibular Salivary Gland ACC112 446 8 1562 141 4 69 277 BBS12,CETN4P,FGF2
SE_02_060500115 chr4:122738729-122799847 Sample_02_0605 Skin Skin Fibroblast_DMSO 115 14 1563 142 4 69 277 BBS12,CETN4P,FGF2,SPATA5
SE_02_131000612 chr4:122738767-122800007 Sample_02_1310 Bone marrow ASMSCs 612 7 1567 142 4 69 277 BBS12,CETN4P,FGF2
SE_02_155200333 chr4:122738776-122801016 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 333 17 1593 145 4 67 277 BBS12,CETN4P,FGF2
SE_02_127900304 chr4:122738800-122799944 Sample_02_1279 Bone Mesenchymal stem cells 304 13 1565 142 4 67 277 BBS12,CETN4P,FGF2
SE_02_142800558 chr4:122738844-122799849 Sample_02_1428 Shoulder fibroblast_316 558 14 1559 142 4 67 277 BBS12,CETN4P,FGF2
SE_02_060600086 chr4:122738862-122800461 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 86 12 1577 144 4 67 277 BBS12,CETN4P,FGF2,SPATA5
SE_02_087800154 chr4:122738862-122811290 Sample_02_0878 Ovary SVOG3e cells_noDox_control 154 12 1855 162 5 84 277 BBS12,CETN4P,FGF2
SE_02_076300738 chr4:122738864-122800002 Sample_02_0763 Podocyte podocyte_DEX 738 14 1563 142 4 67 277 BBS12,CETN4P,FGF2
SE_02_076200856 chr4:122738868-122800036 Sample_02_0762 Podocyte podocyte_CTL 856 14 1564 142 4 67 277 BBS12,CETN4P,FGF2
SE_02_088100231 chr4:122738876-122811257 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 231 12 1853 162 5 84 277 BBS12,CETN4P,FGF2
SE_02_137400445 chr4:122738920-122784237 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 445 24 1137 106 4 66 277 BBS12,CETN4P,FGF2
SE_02_066000797 chr4:122738934-122799830 Sample_02_0660 Mammary gland MCF10DCIS 797 12 1555 142 4 66 277 BBS12,CETN4P,FGF2
SE_02_086700552 chr4:122738957-122799958 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 552 29 1558 142 4 65 277 BBS12,CETN4P,FGF2
SE_02_087900202 chr4:122738988-122811094 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 202 12 1841 162 5 82 277 BBS12,CETN4P,FGF2
SE_02_045700740 chr4:122745173-122763860 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 740 5 428 46 1 9 0 BBS12,CETN4P
SE_02_054500357 chr4:122746148-122783937 Sample_02_0545 Bone marrow K562 WT 357 13 957 78 3 17 0 BBS12,CETN4P,FGF2
SE_02_098700436 chr4:122746316-122783920 Sample_02_0987 Blood K562_Control_1 436 14 951 77 3 17 0 BBS12,CETN4P,FGF2
SE_02_132800158 chr4:122746382-122799652 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 158 13 1379 114 3 17 0 BBS12,CETN4P,FGF2
SE_02_061500012 chr4:122746560-122800532 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 12 15 1398 116 3 17 0 BBS12,CETN4P,FGF2
SE_02_113000107 chr4:122746648-122807226 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 107 20 1572 126 4 19 0 BBS12,CETN4P,FGF2
SE_02_054700159 chr4:122748119-122765669 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 159 5 390 41 1 17 0 BBS12,CETN4P,FGF2
SE_02_017300327 chr4:122748179-122810972 Sample_02_0173 Lung IMR-90_senescent 327 16 1624 132 4 34 0 BBS12,CETN4P,FGF2
SE_02_146600596 chr4:122748517-122799830 Sample_02_1466 Blood HUDEP-2_BCL11AKO 596 10 1337 112 3 17 0 BBS12,CETN4P,FGF2
SE_02_142300458 chr4:122749854-122776379 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 458 4 668 57 1 17 0 BBS12,CETN4P,FGF2
SE_02_101700873 chr4:122755571-122800949 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 873 12 1178 91 2 17 0 BBS12,CETN4P,FGF2
SE_02_108500629 chr4:122755706-122784711 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 629 8 739 53 2 17 0 BBS12,CETN4P,FGF2
SE_02_041000181 chr4:122756762-122800791 Sample_02_0410 Brain BT16_NoDox 181 6 1152 89 2 17 0 BBS12,CETN4P,FGF2
SE_02_040700202 chr4:122756940-122800265 Sample_02_0407 Brain BT16 202 5 1138 88 2 17 0 BBS12,CETN4P,FGF2
SE_02_061000306 chr4:122756957-122799087 Sample_02_0610 Liposarcoma MLS 1765-92 306 11 1113 86 2 17 0 BBS12,CETN4P,FGF2
SE_02_106700306 chr4:122757232-122784195 Sample_02_1067 Bone SJSA-1 306 11 700 48 2 17 0 BBS12,CETN4P,FGF2
SE_02_126100502 chr4:122757417-122799290 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 502 7 1112 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_030500523 chr4:122757436-122799741 Sample_02_0305 Neuroblastoma SH-EP 523 7 1117 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_026300190 chr4:122757533-122800130 Sample_02_0263 Osteoblastic hFOB_undifferentiated 190 8 1124 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_049200634 chr4:122757543-122799799 Sample_02_0492 Pharyng Detroit 562_LPS 634 12 1118 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_001100199 chr4:122757566-122800417 Sample_02_0011 Kidney A-498_wtVHL 199 13 1134 86 2 17 0 BBS12,CETN4P,FGF2
SE_02_001300333 chr4:122757568-122799412 Sample_02_0013 Kidney 786-O_HIF2A 333 9 1114 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_150200250 chr4:122757570-122799549 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 250 14 1115 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_094600238 chr4:122757597-122799147 Sample_02_0946 Tongue HN12 238 8 1107 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_149700112 chr4:122757612-122799428 Sample_02_1497 Brain SHEP-21N 112 11 1112 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_151500101 chr4:122757623-122799197 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 101 12 1106 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_149800127 chr4:122757635-122799526 Sample_02_1498 Brain SHEP-21N_DOX_2h 127 10 1112 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_026800537 chr4:122757640-122799328 Sample_02_0268 Kidney A-498 537 13 1109 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_049100593 chr4:122757649-122800045 Sample_02_0491 Pharyng Detroit 562-Control 593 7 1120 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_154900567 chr4:122757655-122800315 Sample_02_1549 Gastrointestinal Stromal GIST-430B 567 9 1128 86 2 17 0 BBS12,CETN4P,FGF2
SE_02_126000335 chr4:122757680-122799560 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 335 8 1111 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_008900423 chr4:122757683-122783913 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 423 5 683 47 2 17 0 BBS12,CETN4P,FGF2
SE_02_024300190 chr4:122757698-122800224 Sample_02_0243 Foreskin foreskin_HFFs 190 5 1125 86 2 17 0 BBS12,CETN4P,FGF2
SE_02_077100474 chr4:122757724-122799805 Sample_02_0771 Ovary OVCA429_shGRHL2 474 27 1114 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_126400649 chr4:122757725-122799899 Sample_02_1264 Bone Im-GCT-4072_G34W KO 649 7 1115 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_150100146 chr4:122757729-122799577 Sample_02_1501 Brain SHEP-21N_NOSPIKE 146 13 1111 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_151600240 chr4:122757737-122784706 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 240 11 707 49 2 17 0 BBS12,CETN4P,FGF2
SE_02_150700189 chr4:122757754-122799148 Sample_02_1507 Brain SHEP-21N_DOX_24h 189 10 1104 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_060200204 chr4:122757767-122799372 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 204 8 1109 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_088600701 chr4:122757786-122799670 Sample_02_0886 Skin foreskin_ p63KLF4 701 8 1112 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_005700305 chr4:122757793-122800068 Sample_02_0057 Mammary gland vHMEC 305 11 1119 85 2 17 0 BBS12,CETN4P,FGF2
SE_02_145500635 chr4:122757798-122784202 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 635 7 695 48 2 17 0 BBS12,CETN4P,FGF2
SE_02_039500450 chr4:122757828-122798615 Sample_02_0395 Mammary gland BT-549 450 7 1091 83 2 17 0 BBS12,CETN4P,FGF2
SE_02_145400586 chr4:122757854-122784248 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 586 6 695 48 2 17 0 BBS12,CETN4P,FGF2
SE_02_008800157 chr4:122757897-122799522 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 157 7 1110 83 2 17 0 BBS12,CETN4P,FGF2
SE_02_126501240 chr4:122757903-122799792 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1240 5 1113 84 2 17 0 BBS12,CETN4P,FGF2
SE_02_135600097 chr4:122757934-122799485 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 97 8 1108 83 2 17 0 BBS12,CETN4P,FGF2
SE_02_064000692 chr4:122758154-122786822 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 692 22 771 58 2 14 0 BBS12,CETN4P,FGF2
SE_02_065800077 chr4:122758169-122798961 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 77 8 1095 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_064300488 chr4:122758170-122785043 Sample_02_0643 Mammary gland MDA-MB-436 488 15 709 50 2 14 0 BBS12,CETN4P,FGF2
SE_02_066100642 chr4:122758176-122799250 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 642 13 1101 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_113300100 chr4:122758184-122799396 Sample_02_1133 Liver Hepatic stellate cells 100 6 1103 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_058800373 chr4:122758189-122784691 Sample_02_0588 Cervix HeLa Kyoto_untreated 373 16 700 48 2 14 0 BBS12,CETN4P,FGF2
SE_02_125900242 chr4:122758189-122799717 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 242 6 1105 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_060300088 chr4:122758191-122799809 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 88 10 1107 84 2 14 0 BBS12,CETN4P,FGF2
SE_02_059000517 chr4:122758193-122783356 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 517 13 661 45 2 14 0 BBS12,CETN4P,FGF2
SE_02_145200740 chr4:122758193-122784253 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 740 5 690 48 2 14 0 BBS12,CETN4P,FGF2
SE_02_093900534 chr4:122758204-122784765 Sample_02_0939 Mammary gland MDA-MB-231_control 534 5 700 48 2 14 0 BBS12,CETN4P,FGF2
SE_02_063800494 chr4:122758216-122784530 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 494 14 696 48 2 14 0 BBS12,CETN4P,FGF2
SE_02_064200425 chr4:122758220-122798003 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 425 14 1069 81 2 14 0 BBS12,CETN4P,FGF2
SE_02_045100733 chr4:122758225-122784628 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 733 7 697 48 2 14 0 BBS12,CETN4P,FGF2
SE_02_001000539 chr4:122758258-122799512 Sample_02_0010 Kidney A-498_emptyvector 539 9 1102 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_063700220 chr4:122758296-122799687 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 220 16 1104 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_063600365 chr4:122758298-122799995 Sample_02_0636 Skin BJ5ta 365 7 1110 84 2 14 0 BBS12,CETN4P,FGF2
SE_02_135500094 chr4:122758387-122799348 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 94 7 1100 83 2 14 0 BBS12,CETN4P,FGF2
SE_02_050000627 chr4:122758528-122799800 Sample_02_0500 Fetal lung IMR90_#2 627 15 1104 84 2 14 0 BBS12,CETN4P,FGF2
SE_02_137501029 chr4:122758885-122784332 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 1029 13 673 45 2 14 0 BBS12,CETN4P,FGF2
SE_02_018200432 chr4:122761534-122784861 Sample_02_0182 melanoma LOX-IMVI 432 11 627 39 2 14 0 BBS12,CETN4P,FGF2
SE_02_137700714 chr4:122761753-122784334 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 714 8 608 39 2 14 0 BBS12,CETN4P,FGF2
SE_02_009300624 chr4:122763076-122778644 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 624 4 425 24 2 8 0 BBS12,CETN4P,FGF2
SE_02_009100175 chr4:122763410-122784587 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 175 4 585 39 2 8 0 BBS12,CETN4P,FGF2
SE_02_137900520 chr4:122763463-122784283 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 520 13 578 39 2 8 0 BBS12,CETN4P,FGF2
SE_02_084900597 chr4:122763485-122784216 Sample_02_0849 iPSCs iPSC_CBP-30 597 7 575 38 2 8 0 BBS12,CETN4P,FGF2
SE_02_141800549 chr4:122763648-122784179 Sample_02_1418 Brain SF9427 549 6 569 37 2 8 0 BBS12,CETN4P,FGF2
SE_02_156801329 chr4:122763655-122784299 Sample_02_1568 Heart Cardiac progenitor cells 1329 7 571 38 2 8 0 BBS12,CETN4P,FGF2
SE_02_009200325 chr4:122763767-122783953 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 325 3 553 35 2 8 0 BBS12,CETN4P,FGF2
SE_02_022900482 chr4:122763965-122784234 Sample_02_0229 Umbilical cord ID01 482 6 561 37 2 8 0 BBS12,CETN4P,FGF2
SE_02_023000209 chr4:122764727-122784084 Sample_02_0230 Umbilical cord ID60 209 8 544 36 2 5 0 BBS12,CETN4P,FGF2
SE_02_076100214 chr4:122768343-122788331 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 214 1 596 42 2 0 0 BBS12,CETN4P,FGF2
SE_02_075900204 chr4:122770735-122788254 Sample_02_0759 Ovary BIN-67_Control 204 1 520 38 2 0 0 BBS12,CETN4P,FGF2
Genomic distribution of SEs associated with BBS12
Genome Browser

The strength of the tissue affected by the gene

Expression of BBS12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)