SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000018625
Gene: ATP1A2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:160115759-160143591 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_053300482 chr1:160083735-160134954 Sample_02_0533 Blood vessel Circle of Willis_54y 482 15 1419 109 8 458 3156 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_01_007000569 chr1:160084474-160150610 Sample_01_0070 Ascending aorta ascending-aorta 569 9 1875 164 9 506 4002 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10,CASQ1
SE_01_007300542 chr1:160084524-160150711 Sample_01_0073 Coronary artery coronary-artery 542 7 1881 164 9 506 3999 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10,CASQ1
SE_01_008800457 chr1:160085688-160137008 Sample_01_0088 Tibial nerve tibial-nerve 457 10 1456 109 8 433 3277 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_00_003400370 chr1:160085736-160133354 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 370 7 1341 106 8 378 2775 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_01_007700409 chr1:160085742-160138604 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 409 6 1505 115 8 435 3350 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_01_007400525 chr1:160085745-160138774 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 525 5 1505 115 8 435 3350 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_01_007800659 chr1:160085790-160138254 Sample_01_0078 Heart left ventricle heart-left-ventricle 659 6 1490 114 8 433 3350 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_01_009700065 chr1:160086191-160149133 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 65 8 1803 155 8 472 3884 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10,CASQ1
SE_02_036700076 chr1:160086797-160137820 Sample_02_0367 Skeletal muscle NS129 76 3 1463 113 7 415 3350 IGSF8,KCNJ9,ATP1A2,ATP1A4,KCNJ10
SE_02_121200490 chr1:160093600-160124928 Sample_02_1212 Brain GBM30 490 8 854 66 4 208 1135 ATP1A2,IGSF8,KCNJ9,KCNJ10,ATP1A4
SE_02_032800517 chr1:160094529-160126113 Sample_02_0328 Embryo H9_naive 517 4 867 70 6 204 1067 IGSF8,ATP1A2,KCNJ9,ATP1A4,KCNJ10
SE_02_003600931 chr1:160094587-160124855 Sample_02_0036 Embryo H7 931 8 829 65 4 187 981 IGSF8,ATP1A2,KCNJ9,ATP1A4,KCNJ10
SE_01_007600125 chr1:160095199-160150552 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 125 2 1590 137 7 380 2598 IGSF8,ATP1A2,ATP1A4,KCNJ10,CASQ1,KCNJ9
SE_02_097700104 chr1:160095297-160145400 Sample_02_0977 Brain 2089_H3.3K27WT 104 26 1451 123 6 371 2574 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10,CASQ1
SE_02_101701771 chr1:160095301-160129089 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1771 9 944 73 6 232 1200 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_02_067600292 chr1:160095685-160124433 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 292 7 783 58 2 173 800 ATP1A2,IGSF8,KCNJ9,KCNJ10,ATP1A4,CASQ1
SE_02_096000076 chr1:160096265-160119070 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 76 6 619 47 2 140 381 ATP1A2,IGSF8,KCNJ9,KCNJ10,ATP1A4
SE_02_118400236 chr1:160096471-160130625 Sample_02_1184 Brain GBM13 236 14 958 73 6 242 1396 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_02_090000701 chr1:160096565-160134666 Sample_02_0900 Heart left ventricle_LV1452 701 13 1075 79 6 281 1511 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_01_008300539 chr1:160096906-160138871 Sample_01_0083 Sigmoid colon sigmoid-colon 539 6 1199 90 6 315 2016 IGSF8,ATP1A2,ATP1A4,KCNJ10,KCNJ9
SE_03_001300907 chr1:160097636-160134083 Sample_03_0013 Lung A549 907 5 1035 79 6 262 1441 IGSF8,ATP1A2,ATP1A4,KCNJ10,KCNJ9
SE_00_003200040 chr1:160097793-160138449 Sample_00_0032 Psoas muscle psoas-muscle_30y 40 5 1176 87 6 314 2016 IGSF8,ATP1A2,ATP1A4,KCNJ10,KCNJ9
SE_02_058600578 chr1:160097799-160129871 Sample_02_0586 Chordal patient-derived chordoma MGH_4 578 7 907 72 6 220 1268 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_00_003300296 chr1:160097802-160133637 Sample_00_0033 Psoas muscle psoas-muscle_3y 296 5 1030 79 6 260 1441 IGSF8,ATP1A2,ATP1A4,KCNJ10,KCNJ9
SE_00_002900733 chr1:160099002-160118171 Sample_00_0029 Ovary ovary 733 14 540 46 2 106 122 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_02_001900539 chr1:160099021-160141448 Sample_02_0019 Embryo Neural crest cells 539 17 1259 102 6 308 1960 ATP1A2,ATP1A4,KCNJ10,IGSF8,CASQ1,KCNJ9
SE_02_036800072 chr1:160100518-160145683 Sample_02_0368 Skeletal muscle NS134 72 5 1336 117 6 321 2290 ATP1A2,ATP1A4,KCNJ10,IGSF8,CASQ1,KCNJ9
SE_01_009800659 chr1:160100526-160138349 Sample_01_0098 Heart left ventricle_51y 659 11 1110 83 6 284 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_091200614 chr1:160100580-160148330 Sample_02_0912 Heart left ventricle_DCM_LV1300 614 16 1389 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090801089 chr1:160100610-160143128 Sample_02_0908 Heart left ventricle_DCM_LV1262 1089 20 1273 109 6 306 2228 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090400798 chr1:160100653-160160136 Sample_02_0904 Heart left ventricle_DCM_LV1028 798 14 1798 172 9 348 2799 ATP1A2,ATP1A4,KCNJ9,KCNJ10,PEA15,IGSF8,CASQ1,LOC729867
SE_02_090100523 chr1:160100697-160138299 Sample_02_0901 Heart left ventricle_LV1471 523 18 1103 83 6 284 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_088900635 chr1:160100715-160160195 Sample_02_0889 Heart left ventricle_LV1183 635 15 1796 172 9 349 2799 ATP1A2,ATP1A4,KCNJ9,KCNJ10,PEA15,IGSF8,CASQ1,LOC729867
SE_02_090600885 chr1:160100717-160137554 Sample_02_0906 Heart left ventricle_DCM_LV1072 885 14 1088 82 6 282 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_091900532 chr1:160100734-160134838 Sample_02_0919 Heart left ventricle_DCM_LV1532 532 13 990 75 6 244 1277 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_118300375 chr1:160100736-160132678 Sample_02_1183 Brain GBM12 375 16 927 75 6 221 1181 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_00_004600316 chr1:160100751-160148030 Sample_00_0046 Heart right ventricle_34y 316 24 1376 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089200747 chr1:160100752-160148342 Sample_02_0892 Heart left ventricle_LV1215 747 12 1387 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090300688 chr1:160100798-160138448 Sample_02_0903 Heart left ventricle_DCM_LV1009 688 13 1109 83 6 284 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_091000600 chr1:160100799-160138718 Sample_02_0910 Heart left ventricle_DCM_LV1275 600 21 1114 84 6 284 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_089800650 chr1:160100880-160148480 Sample_02_0898 Heart left ventricle_LV1356 650 10 1391 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089300632 chr1:160100976-160137710 Sample_02_0893 Heart left ventricle_LV1226 632 9 1086 83 6 282 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090700521 chr1:160100980-160148457 Sample_02_0907 Heart left ventricle_DCM_LV1223 521 19 1387 121 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090900659 chr1:160101039-160148474 Sample_02_0909 Heart left ventricle_DCM_LV1264 659 15 1385 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_088800777 chr1:160101062-160138441 Sample_02_0888 Heart left ventricle_LV1160 777 15 1102 82 6 284 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_090500902 chr1:160101140-160148553 Sample_02_0905 Heart left ventricle_DCM_LV1033 902 12 1383 120 7 322 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_096100324 chr1:160101166-160121116 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 324 6 562 44 2 103 215 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8
SE_02_090200625 chr1:160101168-160137736 Sample_02_0902 Heart left ventricle_LV1558 625 12 1079 81 6 281 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_158401489 chr1:160101177-160129936 Sample_02_1584 Brain U87 GBM_Mock 1489 4 829 66 6 192 1010 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_118600608 chr1:160101187-160134738 Sample_02_1186 Brain GBM15 608 14 975 73 6 243 1266 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_088700816 chr1:160101190-160133900 Sample_02_0887 Heart left ventricle_LV1121 816 7 954 73 6 230 1181 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_091100442 chr1:160101192-160138330 Sample_02_0911 Heart left ventricle_DCM_LV1290 442 20 1093 81 6 283 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_091800964 chr1:160101199-160133397 Sample_02_0918 Heart left ventricle_DCM_LV1437 964 12 941 73 6 227 1181 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_089100451 chr1:160101200-160148667 Sample_02_0891 Heart left ventricle_LV1202 451 20 1383 119 7 320 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089500505 chr1:160101216-160133195 Sample_02_0895 Heart left ventricle_LV1259 505 11 933 73 6 222 1181 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_118700558 chr1:160101239-160132798 Sample_02_1187 Brain GBM16 558 14 918 73 6 215 1181 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_118200140 chr1:160101243-160145423 Sample_02_1182 Brain GBM11 140 11 1312 115 6 314 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089700592 chr1:160101255-160138249 Sample_02_0897 Heart left ventricle_LV1325 592 13 1086 81 6 276 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089400402 chr1:160101265-160137510 Sample_02_0894 Heart left ventricle_LV1248 402 11 1073 78 6 275 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_092000788 chr1:160101270-160137273 Sample_02_0920 Heart left ventricle_DCM_LV1535 788 11 1058 77 6 275 1725 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_091700828 chr1:160101272-160138755 Sample_02_0917 Heart left ventricle_DCM_LV1433 828 14 1101 82 6 277 1756 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_00_005200856 chr1:160101290-160148275 Sample_00_0052 Heart left ventricle 3y 856 13 1369 119 7 314 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_089000611 chr1:160101299-160135030 Sample_02_0890 Heart left ventricle_LV1200 611 12 985 74 6 236 1286 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_046500157 chr1:160101304-160149892 Sample_02_0465 Adipose subcutaneous adipocytes 157 27 1429 126 7 319 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_078500163 chr1:160101313-160118562 Sample_02_0785 Brain 2097 163 5 491 41 2 94 121 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8
SE_02_068000099 chr1:160101330-160118203 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 99 14 485 41 2 94 121 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8
SE_02_141500704 chr1:160102312-160128783 Sample_02_1415 Brain DIPGIV 704 7 760 63 6 160 853 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_004001158 chr1:160103114-160126248 Sample_02_0040 Embryo PFG 1158 5 658 54 6 120 654 ATP1A2,IGSF8,KCNJ9,ATP1A4,KCNJ10
SE_02_068100140 chr1:160104153-160120374 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 140 9 459 38 2 81 121 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8,CASQ1
SE_02_091600867 chr1:160104556-160134574 Sample_02_0916 Heart left ventricle_DCM_LV1392 867 11 877 68 6 211 1236 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8
SE_02_119301100 chr1:160111855-160119872 Sample_02_1193 Brain GBM27 1100 1 221 11 1 53 121 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8
SE_02_118100899 chr1:160111886-160119753 Sample_02_1181 Brain GBM10 899 1 216 10 1 53 121 ATP1A2,KCNJ9,KCNJ10,ATP1A4,IGSF8
SE_01_009400146 chr1:160112619-160144131 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 146 1 957 77 5 266 2290 ATP1A2,KCNJ9,ATP1A4,KCNJ10,IGSF8,CASQ1
SE_02_026900314 chr1:160119878-160133506 Sample_02_0269 Kidney HK-2 314 5 418 31 4 127 1060 ATP1A2,ATP1A4,KCNJ10,IGSF8,KCNJ9
Genomic distribution of SEs associated with ATP1A2
Genome Browser

The strength of the tissue affected by the gene

Expression of ATP1A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)