SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000158874
Gene: APOA2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:161222292-161223631 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_008200641 chr1:161213558-161228886 Sample_01_0082 Right lobe of liver right-lobe-of-liver 641 1 406 43 4 143 1428 NDUFS2,FCER1G,APOA2,TOMM40L,B4GALT3,PPOX,PCP4L1,NR1I3,ADAMTS4
SE_02_032200334 chr1:161215266-161228382 Sample_02_0322 Colon Caco-2 334 1 337 37 4 109 1180 FCER1G,APOA2,TOMM40L,NDUFS2,B4GALT3,PPOX,PCP4L1,NR1I3,ADAMTS4
SE_02_028600200 chr1:161215666-161228075 Sample_02_0286 Liver HuH7_IL-1alpha_1h 200 1 309 35 4 103 1068 FCER1G,APOA2,TOMM40L,NDUFS2,B4GALT3,PPOX,PCP4L1,NR1I3,ADAMTS4
SE_02_004900133 chr1:161215722-161225871 Sample_02_0049 Embryo endodermal CyT49_GTtoH 133 1 255 33 4 45 635 FCER1G,APOA2,NDUFS2,B4GALT3,PPOX,TOMM40L,PCP4L1,NR1I3,ADAMTS4
SE_02_028500131 chr1:161216340-161228072 Sample_02_0285 Liver HuH7_untreat 131 1 294 34 4 103 1067 FCER1G,APOA2,TOMM40L,NDUFS2,B4GALT3,PPOX,PCP4L1,NR1I3,ADAMTS4
SE_02_032701097 chr1:161216422-161228391 Sample_02_0327 Liver hepatocytes_d6 1097 1 302 35 4 107 1131 FCER1G,APOA2,TOMM40L,NDUFS2,B4GALT3,PCP4L1,NR1I3,ADAMTS4
SE_01_003800299 chr1:161216433-161225866 Sample_01_0038 Liver HepG2 299 3 238 32 4 45 635 FCER1G,APOA2,NDUFS2,B4GALT3,PCP4L1,TOMM40L,NR1I3,ADAMTS4,PZ,TO40L
SE_02_020700095 chr1:161216479-161227631 Sample_02_0207 Stomach FU97 95 3 279 34 4 87 988 FCER1G,APOA2,TOMM40L,NDUFS2,B4GALT3,PCP4L1,NR1I3,ADAMTS4
SE_02_001500450 chr1:161217429-161225872 Sample_02_0015 Liver HepG2_shNS 450 2 218 30 4 40 635 FCER1G,APOA2,NDUFS2,B4GALT3,PCP4L1,TOMM40L,NR1I3,ADAMTS4
SE_02_004500775 chr1:161222172-161225964 Sample_02_0045 Embryo endodermal CyT49_ES_D7 775 1 92 7 1 18 328 APOA2,NDUFS2,B4GALT3,PCP4L1,TOMM40L,NR1I3,ADAMTS4,FCER1G
Genomic distribution of SEs associated with APOA2
Genome Browser

The strength of the tissue affected by the gene

Expression of APOA2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)