SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000133805
Gene: AMPD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:10308313-10507579 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_026100051 chr11:10346455-10419819 Sample_02_0261 Osteoblastic hFOB_differentiated 51 7 2225 253 24 200 120 ADM,AMPD3
SE_02_026200089 chr11:10347804-10419632 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 89 9 2184 244 22 198 120 ADM,AMPD3
SE_02_017200877 chr11:10348163-10419436 Sample_02_0172 Lung IMR-90_quiescent 877 13 2176 243 22 198 120 ADM,AMPD3
SE_02_155200123 chr11:10348201-10419511 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 123 21 2177 243 22 198 120 CAND1.11,AMPD3,ADM
SE_02_093000023 chr11:10348234-10415408 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 23 37 2066 226 22 198 120 CAND1.11,AMPD3,ADM,SBF2
SE_02_092900155 chr11:10348318-10415271 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 155 35 2060 225 22 198 120 CAND1.11,AMPD3,ADM,SBF2
SE_02_142800245 chr11:10348350-10419349 Sample_02_1428 Shoulder fibroblast_316 245 17 2172 243 22 198 120 CAND1.11,AMPD3,ADM
SE_02_046600359 chr11:10348389-10419199 Sample_02_0466 Adipose visceral adipocytes 359 41 2166 242 22 198 120 CAND1.11,AMPD3,ADM,RNF141,SBF2
SE_02_142700772 chr11:10348414-10419155 Sample_02_1427 Shoulder fibroblast_343 772 21 2166 242 22 198 120 CAND1.11,AMPD3,ADM
SE_02_145500280 chr11:10348483-10419169 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 280 20 2165 242 22 198 120 CAND1.11,AMPD3,ADM
SE_02_131100351 chr11:10348558-10419149 Sample_02_1311 Bone marrow HDMSCs 351 18 2164 241 22 198 120 CAND1.11,AMPD3,ADM
SE_02_086900532 chr11:10348640-10415429 Sample_02_0869 Fibroblast VH10_NO_UV 532 30 2054 223 22 198 120 CAND1.11,AMPD3,ADM
SE_02_088600672 chr11:10348925-10427148 Sample_02_0886 Skin foreskin_ p63KLF4 672 26 2407 260 22 198 120 CAND1.11,AMPD3,ADM
SE_02_131000286 chr11:10349157-10419196 Sample_02_1310 Bone marrow ASMSCs 286 16 2142 237 22 198 120 CAND1.11,AMPD3,ADM
SE_02_017500744 chr11:10349445-10407666 Sample_02_0175 Lung IMR-90_Etoposide 744 19 1781 170 18 175 57 AMPD3,ADM
SE_02_017300469 chr11:10350482-10408362 Sample_02_0173 Lung IMR-90_senescent 469 15 1782 173 19 175 57 AMPD3,ADM
SE_02_086800113 chr11:10350793-10417166 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 113 37 2044 229 22 197 120 CAND1.11,AMPD3,ADM
SE_02_145400280 chr11:10366025-10419193 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 280 14 1634 199 22 147 120 CAND1.11,AMPD3
SE_02_145201240 chr11:10366228-10406710 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1240 12 1237 127 17 122 57 CAND1.11,AMPD3
SE_00_001500570 chr11:10366266-10396987 Sample_00_0015 Lung IMR-90 570 7 939 116 10 108 57 AMPD3
SE_02_145100722 chr11:10366293-10419153 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 722 11 1627 197 22 145 120 CAND1.11,AMPD3
SE_02_056900939 chr11:10366393-10415352 Sample_02_0569 Periodontal ligament mesenchymal stem cell 939 27 1519 180 22 144 120 CAND1.11,AMPD3
SE_02_086701238 chr11:10366419-10415166 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1238 23 1507 179 22 143 120 CAND1.11,AMPD3
SE_02_061300964 chr11:10366469-10415520 Sample_02_0613 Liposarcoma MLPS_T1 964 11 1518 180 22 143 120 CAND1.11,AMPD3
SE_02_132800209 chr11:10366820-10409951 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 209 17 1331 143 22 118 57 CAND1.11,AMPD3
SE_02_024300371 chr11:10370689-10396400 Sample_02_0243 Foreskin foreskin_HFFs 371 4 784 104 6 97 57 AMPD3
SE_02_060500663 chr11:10373063-10418982 Sample_02_0605 Skin Skin Fibroblast_DMSO 663 14 1439 176 18 134 120 CAND1.11,AMPD3,SBF2
SE_02_060600613 chr11:10373262-10418704 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 613 17 1424 174 18 134 120 CAND1.11,AMPD3,SBF2
SE_02_026300321 chr11:10373565-10419346 Sample_02_0263 Osteoblastic hFOB_undifferentiated 321 5 1438 176 18 123 120 AMPD3
SE_02_113300954 chr11:10374409-10388481 Sample_02_1133 Liver Hepatic stellate cells 954 5 432 70 4 57 0 CAND1.11,AMPD3
SE_02_063800780 chr11:10374692-10395738 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 780 11 670 90 6 79 57 CAND1.11,AMPD3
SE_01_011700687 chr11:10375035-10395836 Sample_01_0117 Lung fibroblast of lung 687 9 664 90 6 77 57 CAND1.11,AMPD3
SE_02_012400251 chr11:10382325-10411867 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 251 5 979 100 14 77 120 AMPD3
SE_02_114500826 chr11:10382597-10426385 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 826 19 1416 160 14 90 120 CAND1.11,AMPD3
SE_02_155600327 chr11:10386184-10416134 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 327 8 966 99 14 86 120 CAND1.11,AMPD3
SE_02_030700221 chr11:10386400-10410306 Sample_02_0307 Neuroblastoma SJNB12 221 4 779 58 14 73 57 AMPD3
SE_02_032200659 chr11:10386551-10397737 Sample_02_0322 Colon Caco-2 659 2 374 28 2 49 57 AMPD3
SE_00_003100404 chr11:10386628-10414682 Sample_00_0031 Placenta placenta 404 3 904 89 14 85 120 AMPD3,AD,SBF2
SE_02_155300124 chr11:10386836-10501669 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 124 41 3515 361 21 279 1759 AMPD3,CAND1.11,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_148900192 chr11:10398540-10418257 Sample_02_1489 Bone TC-106 192 10 600 77 12 36 63 CAND1.11,AMPD3
SE_02_106100708 chr11:10400144-10419111 Sample_02_1061 Bone TC71_WT 708 9 582 78 12 36 63 CAND1.11,AMPD3
SE_02_148800710 chr11:10400144-10419111 Sample_02_1488 Bone TC-71 710 9 582 78 12 36 63 CAND1.11,AMPD3
SE_02_147800553 chr11:10401112-10443486 Sample_02_1478 Bone EW-3 553 12 1205 126 13 63 63 CAND1.11,AMPD3
SE_02_010100569 chr11:10434749-10460144 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 569 4 676 77 1 74 501 AMPD3,MTRNR2L8
SE_02_010300376 chr11:10435157-10460164 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 376 4 668 77 1 74 501 AMPD3,MTRNR2L8
SE_02_010400085 chr11:10435282-10507637 Sample_02_0104 Blood neutrophils 85 14 2160 236 9 210 1998 AMPD3,LOC100129827,MTRNR2L8,RNF141
SE_02_008100481 chr11:10435353-10460046 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 481 6 652 75 1 74 501 AMPD3,MTRNR2L8
SE_02_134500648 chr11:10435388-10460039 Sample_02_1345 Leukophereses leukophereses_p358 648 4 651 75 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_01_005200325 chr11:10435415-10507116 Sample_01_0052 Blood neutrophil 325 8 2143 236 9 203 1967 AMPD3,LOC100129827,MTRNR2L8,RNF141
SE_02_152900221 chr11:10435472-10506794 Sample_02_1529 Peripheral blood neutrophils_0BC75 221 24 2138 233 9 202 1936 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_153000264 chr11:10435594-10507352 Sample_02_1530 Peripheral blood neutrophils_0BA0X 264 20 2143 236 9 203 1981 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_131600557 chr11:10435675-10459978 Sample_02_1316 Brain hMGLs_TREM2-R47H 557 7 643 74 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_131500586 chr11:10435739-10459933 Sample_02_1315 Brain hMGLs_INPP5D SNP 586 8 640 74 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_01_004400638 chr11:10435772-10460090 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 638 5 644 75 1 74 501 AMPD3,MTRNR2L8
SE_02_092700352 chr11:10435784-10506807 Sample_02_0927 Peripheral blood neutrophils_US 352 19 2129 232 9 202 1939 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_153100253 chr11:10435800-10506539 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 253 14 2123 231 9 202 1912 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_131800565 chr11:10435802-10459835 Sample_02_1318 Brain hMGLs_SORL1-A528T 565 3 638 74 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_131300541 chr11:10436173-10459959 Sample_02_1313 Brain hMGLs_CD33_SNP 541 8 630 73 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_131700576 chr11:10436409-10459938 Sample_02_1317 Brain hMGLs_SORL1-KO 576 5 629 73 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_131200490 chr11:10436412-10459879 Sample_02_1312 Brain hMGLs_WT 490 6 628 73 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_117500745 chr11:10437089-10459778 Sample_02_1175 Brain GBM03 745 4 614 71 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_156001246 chr11:10438475-10459978 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1246 2 586 71 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_063100418 chr11:10439041-10459849 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 418 4 570 71 1 74 501 AMPD3,MIR4485,MTRNR2L8
SE_02_073200482 chr11:10441776-10459978 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 482 2 508 67 0 65 501 AMPD3,MIR4485,MTRNR2L8
SE_02_073000424 chr11:10441838-10459977 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 424 2 507 67 0 65 501 AMPD3,MIR4485,MTRNR2L8
SE_02_073300441 chr11:10441882-10459990 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 441 2 507 67 0 65 501 AMPD3,MIR4485,MTRNR2L8
SE_02_073100370 chr11:10441921-10460003 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 370 2 507 67 0 65 501 AMPD3,MIR4485,MTRNR2L8
SE_02_072900267 chr11:10442027-10459936 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 267 4 505 66 0 65 501 AMPD3,MIR4485,MTRNR2L8
SE_02_104900641 chr11:10444893-10501410 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 641 26 1786 204 6 158 1574 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_104301867 chr11:10448108-10459926 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1867 3 325 48 0 51 501 AMPD3,MIR4485,MTRNR2L8
SE_02_004700735 chr11:10449329-10459998 Sample_02_0047 Pancreatic endoderm IIDP/donor790 735 3 303 43 0 51 501 AMPD3,MTRNR2L8
SE_02_003200981 chr11:10449448-10459704 Sample_02_0032 Pancreas pancreatic-islets-M 981 5 294 41 0 51 501 AMPD3,MTRNR2L8
SE_02_117300615 chr11:10449494-10458349 Sample_02_1173 Brain GBM01 615 1 262 35 0 42 501 AMPD3,MIR4485
SE_02_121300369 chr11:10449553-10499098 Sample_02_1213 Brain GBM31 369 18 1580 176 6 143 1452 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_120300838 chr11:10449575-10459552 Sample_02_1203 Brain NB1 838 3 286 38 0 51 501 AMPD3,MIR4485,MTRNR2L8
SE_02_120501134 chr11:10449784-10459856 Sample_02_1205 Brain NB3 1134 4 291 40 0 51 501 AMPD3,MIR4485,MTRNR2L8
SE_02_120000676 chr11:10450213-10459895 Sample_02_1200 Brain GBM36 676 3 279 37 0 51 484 AMPD3,MIR4485,MTRNR2L8
SE_01_004100983 chr11:10450270-10457117 Sample_01_0041 Skin keratinocyte 983 1 206 24 0 42 482 AMPD3
SE_02_073500506 chr11:10454007-10460010 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 506 1 172 26 0 39 258 AMPD3,MIR4485,MTRNR2L8
SE_02_155700437 chr11:10454165-10459882 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 437 3 165 26 0 39 258 AMPD3,MIR4485,MTRNR2L8
SE_02_104800739 chr11:10457701-10502670 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 739 12 1466 156 6 119 1176 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_104601545 chr11:10457714-10504860 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1545 19 1509 163 8 134 1322 AMPD3,MRVI1-AS1,MIR4485,MTRNR2L8,RNF141
SE_02_039601764 chr11:10473999-10520150 Sample_02_0396 Skin NHEK-D 1764 14 1397 162 11 159 1941 AMPD3,MTRNR2L8,RNF141,LOC100129827,LYVE1
SE_02_101400232 chr11:10478080-10490231 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 232 3 406 57 2 43 405 AMPD3,MIR4485,MTRNR2L8
Genomic distribution of SEs associated with AMPD3
Genome Browser

The strength of the tissue affected by the gene

Expression of AMPD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)