SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000123505
Gene: AMD1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:110874770-110898879 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_127500334 chr6:110508778-110548113 Sample_02_1275 Prostate PC3_Vorinostat 334 31 1113 92 2 8 0 SLC22A16,AMD1
SE_02_067300369 chr6:110512625-110544403 Sample_02_0673 Prostate LNCAP_FA 369 12 896 75 2 1 0 SLC22A16,AMD1
SE_02_077200238 chr6:110517156-110543148 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 238 6 712 64 2 1 0 SLC22A16,AMD1
SE_02_088601538 chr6:110527433-110548636 Sample_02_0886 Skin foreskin_ p63KLF4 1538 7 574 38 2 8 0 SLC22A16,AMD1
SE_02_057100255 chr6:110527855-110557760 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 255 21 808 52 2 22 0 SLC22A16,AMD1
SE_02_057200316 chr6:110528700-110555913 Sample_02_0572 Brain LN229_1_mM_glucose 316 13 738 46 2 20 0 SLC22A16,AMD1
SE_02_121300351 chr6:110583887-110693787 Sample_02_1213 Brain GBM31 351 43 2620 262 6 145 907 CDK19,SLC22A16,AMD1
SE_02_120300338 chr6:110584011-110689979 Sample_02_1203 Brain NB1 338 36 2520 254 6 145 907 CDK19,SLC22A16,AMD1
SE_02_117300521 chr6:110595861-110728905 Sample_02_1173 Brain GBM01 521 51 3129 295 4 157 907 CDK19,AMD1
SE_02_075600483 chr6:110610801-110621863 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 483 3 240 25 1 37 492 CDK19,SLC22A16,AMD1
SE_02_066900050 chr6:110615355-110683613 Sample_02_0669 Prostate prostate cancer_DSG 50 33 1590 158 3 92 443 CDK19,AMD1
SE_02_140700017 chr6:110617097-110690204 Sample_02_1407 Prostate LNCaP_R1881 4h 17 18 1683 166 3 94 443 CDK19,AMD1
SE_02_076500024 chr6:110617189-110694356 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 24 20 1792 174 3 94 443 CDK19,AMD1
SE_02_076400030 chr6:110617763-110690540 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 30 15 1676 166 3 94 443 CDK19,AMD1
SE_02_066400019 chr6:110617953-110689889 Sample_02_0664 Prostate LNCaP_DMSO 19 14 1662 165 3 94 443 CDK19,AMD1
SE_02_140800013 chr6:110617992-110693592 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 13 16 1759 173 3 94 443 CDK19,AMD1
SE_02_140900008 chr6:110618025-110693729 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 8 20 1760 173 3 94 443 CDK19,AMD1
SE_02_140600020 chr6:110618054-110693622 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 20 24 1759 173 3 94 443 CDK19,AMD1
SE_02_067300018 chr6:110618077-110688925 Sample_02_0673 Prostate LNCAP_FA 18 11 1645 164 3 94 443 CDK19,AMD1
SE_02_050900045 chr6:110642615-110666656 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 45 5 573 58 1 25 52 CDK19,AMD1
SE_02_051100050 chr6:110642686-110666701 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 50 5 570 57 1 25 52 CDK19,AMD1
SE_02_051000019 chr6:110642717-110683235 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 19 6 965 99 1 36 114 CDK19,AMD1
SE_02_077200005 chr6:110649922-110690107 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 5 19 919 92 1 38 62 CDK19,AMD1
SE_02_077400027 chr6:110652108-110689959 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 27 14 870 88 1 38 62 CDK19,AMD1
SE_02_066800090 chr6:110652706-110681356 Sample_02_0668 Prostate prostate cancer FA 90 17 684 72 1 32 62 CDK19,AMD1
SE_02_077300009 chr6:110652712-110689470 Sample_02_0773 Prostate 22Rv1_delSite4_Clone22/23-F8 9 14 850 87 1 36 62 CDK19,AMD1
SE_02_051200032 chr6:110653329-110665553 Sample_02_0512 Prostate LNCaP95_shARv7_DHT 32 8 288 27 1 22 0 CDK19,AMD1
SE_02_051300051 chr6:110653827-110666259 Sample_02_0513 Prostate LNCaP95_shARfl_ETOH 51 9 291 29 1 14 0 CDK19,AMD1
SE_02_051400053 chr6:110654571-110665531 Sample_02_0514 Prostate LNCaP95_shARfl_DHT 53 6 258 27 1 13 0 CDK19,AMD1
SE_02_075201305 chr6:110679811-110708777 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1305 8 669 48 0 9 0 CDK19,AMD1
SE_02_051100625 chr6:110680032-110683567 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 625 2 71 7 0 2 0 CDK19,AMD1
SE_02_057400763 chr6:110798895-110826999 Sample_02_0574 Blood MOLM-13_sgNeg2 763 6 742 65 1 78 601 CDK19,AMD1
SE_02_133100527 chr6:110799613-110827088 Sample_02_1331 Blood Molm13_CTRL 527 6 725 63 1 78 601 CDK19,AMD1
SE_02_077500471 chr6:110806744-110819331 Sample_02_0775 Pancreas EndoC-BH1_SE 471 3 342 31 1 73 601 CDK19,AMD1
SE_02_104301073 chr6:110845977-110890756 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1073 22 1207 128 2 85 246 AMD1,CDK19
SE_02_045900541 chr6:110856295-110886090 Sample_02_0459 Blood ME-1_DMSO_6h 541 11 818 90 1 58 144 AMD1,CDK19
SE_02_084100591 chr6:110857959-110877717 Sample_02_0841 Blood THP-1_untr 591 5 532 48 0 58 144 AMD1,CDK19
SE_02_025500742 chr6:110857967-110877111 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 742 3 515 48 0 58 144 AMD1,CDK19
SE_02_033100300 chr6:110858056-110884358 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 300 4 722 75 0 58 144 AMD1,CDK19
SE_02_061700194 chr6:110858540-110886710 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 194 5 767 80 0 58 144 AMD1,CDK19
SE_02_033200459 chr6:110858599-110879999 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 459 3 569 52 0 58 144 AMD1,CDK19
SE_02_010000537 chr6:110858624-110883904 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 537 4 687 69 0 58 144 AMD1,CDK19
SE_02_083600881 chr6:110858752-110885616 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 881 6 728 76 0 58 144 AMD1,CDK19
SE_02_146000242 chr6:110858762-110885721 Sample_02_1460 Blood Mutz-3 242 7 731 76 0 58 144 AMD1,CDK19
SE_02_057800336 chr6:110858765-110882298 Sample_02_0578 Blood MOLM-13_sgSIK3e4 336 7 634 61 0 58 144 AMD1,CDK19
SE_02_133200405 chr6:110858775-110878339 Sample_02_1332 Blood Monomac6_CTRL 405 4 517 46 0 58 144 AMD1,CDK19
SE_02_109800634 chr6:110858803-110877639 Sample_02_1098 Blood THP1_DMSO_noPMA 634 5 501 44 0 58 144 AMD1,CDK19
SE_02_083501032 chr6:110858813-110879704 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1032 6 558 51 0 58 144 AMD1,CDK19
SE_02_103400330 chr6:110858815-110901050 Sample_02_1034 Blood AML cell 330 6 1169 117 0 121 566 AMD1,CDK19
SE_02_131300643 chr6:110858822-110883982 Sample_02_1313 Brain hMGLs_CD33_SNP 643 4 687 69 0 58 144 AMD1,CDK19
SE_02_083301043 chr6:110858842-110879191 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1043 4 542 50 0 58 144 AMD1,CDK19
SE_02_143100395 chr6:110858867-110898782 Sample_02_1431 Blood T cell 395 5 1095 111 0 121 566 AMD1,CDK19
SE_02_058000910 chr6:110858874-110878812 Sample_02_0580 Blood HEL_sgSIK3e4 910 4 529 48 0 58 144 AMD1,CDK19
SE_02_133100386 chr6:110858914-110877625 Sample_02_1331 Blood Molm13_CTRL 386 3 500 44 0 58 144 AMD1,CDK19
SE_02_036200708 chr6:110858917-110884124 Sample_02_0362 Haematopoietic and lymphoid tissue REH 708 4 689 69 0 58 144 AMD1,CDK19
SE_02_057500371 chr6:110858927-110882183 Sample_02_0575 Blood MOLM13_sgLKB1e2 371 6 628 60 0 58 144 AMD1,CDK19
SE_02_046000496 chr6:110858940-110886655 Sample_02_0460 Blood ME-1_I-10-49_6h 496 15 762 80 0 58 144 AMD1,CDK19
SE_02_099300574 chr6:110858948-110877526 Sample_02_0993 Blood MOLM-13_empty 574 5 496 44 0 58 144 AMD1,CDK19
SE_02_057900934 chr6:110858964-110878637 Sample_02_0579 Blood HEL_sgNeg2 934 5 522 47 0 58 144 AMD1,CDK19
SE_02_131400639 chr6:110858970-110883658 Sample_02_1314 Brain hMGLs_TREM2-KO 639 5 672 67 0 58 144 AMD1,CDK19
SE_02_050100328 chr6:110858976-110877631 Sample_02_0501 Blood HL-60_CTRL 328 4 498 44 0 58 144 AMD1,CDK19
SE_02_057601033 chr6:110858979-110892007 Sample_02_0576 Blood HEL_sgLKB1e2 1033 9 916 93 0 83 256 AMD1,CDK19
SE_02_099400584 chr6:110858993-110877792 Sample_02_0994 Blood MOLM13_SIK3TQ 584 6 500 44 0 58 144 AMD1,CDK19
SE_02_058100420 chr6:110858994-110878835 Sample_02_0581 Blood MOLM13_empty_HG 420 4 526 48 0 58 144 AMD1,CDK19
SE_02_057700392 chr6:110858997-110891916 Sample_02_0577 Blood MOLM13_empty 392 5 912 92 0 83 246 AMD1,CDK19
SE_02_135000741 chr6:110859000-110882985 Sample_02_1350 Leukophereses leukophereses_p456 741 8 650 65 0 58 144 AMD1,CDK19
SE_02_058200407 chr6:110859001-110878323 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 407 3 511 46 0 58 144 AMD1,CDK19
SE_02_081601210 chr6:110859001-110879765 Sample_02_0816 Ovary Clear cell ovarian cancer 1210 4 556 51 0 58 144 AMD1,CDK19
SE_02_057400324 chr6:110859021-110882310 Sample_02_0574 Blood MOLM-13_sgNeg2 324 6 629 61 0 58 144 AMD1,CDK19
SE_02_102800368 chr6:110859115-110876821 Sample_02_1028 Blood HL-60_WT 368 3 472 43 0 58 144 AMD1,CDK19
SE_02_099500610 chr6:110859121-110877580 Sample_02_0995 Blood MOLM-13_empty vector 610 5 492 43 0 58 144 AMD1,CDK19
SE_00_005501168 chr6:110859160-110877077 Sample_00_0055 Spleen spleen 34y 1168 5 477 43 0 58 144 AMD1,CDK19
SE_02_109400246 chr6:110859191-110877393 Sample_02_1094 Embryo H9_0Dox 246 3 483 43 0 58 144 AMD1,CDK19
SE_02_134700496 chr6:110859262-110877464 Sample_02_1347 Leukophereses leukophereses_p401 496 5 481 43 0 58 144 AMD1,CDK19
SE_01_003300487 chr6:110866104-110886248 Sample_01_0033 Embryo H9 487 4 536 56 0 58 144 AMD1
SE_02_122301178 chr6:110866476-110882342 Sample_02_1223 Bone marrow KMS28BM 1178 6 414 38 0 58 144 AMD1
SE_02_122901444 chr6:110866805-110897056 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1444 10 806 80 0 121 566 AMD1
SE_02_139400448 chr6:110866894-110880964 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 448 3 360 35 0 58 144 AMD1
SE_02_074700722 chr6:110871460-110893391 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 722 12 612 63 0 102 387 AMD1
SE_02_016900036 chr6:110871949-110904560 Sample_02_0169 Prostate LNCaP_R1881 36 3 902 93 1 121 566 AMD1
SE_02_017000032 chr6:110871980-110904407 Sample_02_0170 Prostate LNCaP_R1881_DOX 32 2 900 93 1 121 566 AMD1
SE_02_016800103 chr6:110872087-110904475 Sample_02_0168 Prostate LNCaP 103 1 898 93 1 121 566 AMD1
SE_02_140800265 chr6:110872496-110913878 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 265 17 1172 130 1 121 566 AMD1,GTF3C6
SE_02_050900097 chr6:110872744-110889677 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 97 8 475 53 0 68 211 AMD1
SE_02_140700173 chr6:110872762-110905006 Sample_02_1407 Prostate LNCaP_R1881 4h 173 15 913 97 1 119 566 AMD1
SE_02_076400138 chr6:110872810-110905136 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 138 9 914 97 1 119 566 AMD1
SE_02_140600262 chr6:110872834-110901948 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 262 17 823 83 1 118 566 AMD1
SE_02_140900183 chr6:110872872-110901766 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 183 7 815 83 1 117 566 AMD1
SE_02_066400140 chr6:110872889-110902254 Sample_02_0664 Prostate LNCaP_DMSO 140 10 841 84 1 116 566 AMD1
SE_02_051000092 chr6:110872895-110888628 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 92 6 447 51 0 55 175 AMD1
SE_02_038200807 chr6:110872905-110885376 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 807 1 344 39 0 53 144 AMD1
SE_00_004300866 chr6:110872956-110879977 Sample_00_0043 Stomach stomach_96d 866 2 192 17 0 52 144 AMD1
SE_02_051100166 chr6:110872998-110889651 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 166 9 474 53 0 64 211 AMD1
SE_02_030300279 chr6:110873052-110880475 Sample_02_0303 Neuroblastoma LAN1 279 1 207 21 0 52 144 AMD1
SE_02_067300147 chr6:110873059-110901201 Sample_02_0673 Prostate LNCAP_FA 147 10 795 82 0 115 566 AMD1
SE_02_138200470 chr6:110873108-110891863 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 470 10 537 57 0 77 246 AMD1
SE_01_006800337 chr6:110873143-110879596 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 337 1 176 16 0 52 144 AMD1
SE_02_059100457 chr6:110873161-110877158 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 457 1 108 9 0 52 144 AMD1
SE_02_048900242 chr6:110873209-110879352 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 242 2 169 15 0 52 144 AMD1
SE_01_003701056 chr6:110873241-110879878 Sample_01_0037 Liver hepatocyte 1056 1 183 16 0 52 144 AMD1
SE_02_076500269 chr6:110873278-110905180 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 269 9 912 96 1 115 566 AMD1
SE_02_092400755 chr6:110873417-110884159 Sample_02_0924 Heart fetal heart_PCW10_12569 755 5 307 34 0 52 144 AMD1
SE_00_002001566 chr6:110873472-110880118 Sample_00_0020 Large intestine large-intestine_108d 1566 1 189 18 0 52 144 AMD1
SE_02_143000331 chr6:110873509-110878843 Sample_02_1430 Blood Kasumi-3_mock-infected 331 2 143 10 0 52 144 AMD1
SE_00_003601521 chr6:110873533-110877995 Sample_00_0036 Small intestine small-intestine_108days 1521 1 122 7 0 52 144 AMD1
SE_02_055500623 chr6:110873533-110885907 Sample_02_0555 Other HAP1_WT 623 8 352 39 0 52 144 AMD1
SE_02_092201006 chr6:110873563-110884418 Sample_02_0922 Heart fetal heart_PCW10_12434 1006 4 309 33 0 52 144 AMD1
SE_02_048400207 chr6:110873581-110884660 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 207 3 315 34 0 52 144 AMD1
SE_02_076000821 chr6:110873587-110881679 Sample_02_0760 Ovary BIN-67_SMARCA4 821 2 231 21 0 52 144 AMD1
SE_02_059200211 chr6:110873608-110877539 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 211 1 110 6 0 50 144 AMD1
SE_02_138100615 chr6:110873614-110886315 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 615 8 365 40 0 50 144 AMD1
SE_02_090401333 chr6:110873639-110885853 Sample_02_0904 Heart left ventricle_DCM_LV1028 1333 5 348 39 0 50 144 AMD1
SE_02_048200323 chr6:110873640-110876946 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 323 1 96 6 0 50 144 AMD1
SE_02_146800398 chr6:110873649-110890389 Sample_02_1468 Blood HUDEP-2_WT 398 3 486 51 0 75 234 AMD1
SE_00_003900820 chr6:110873652-110877872 Sample_00_0039 Spleen spleen_3y 820 1 118 7 0 50 144 AMD1
SE_02_059300409 chr6:110873665-110877561 Sample_02_0593 Fetal spleenocytes fetal naive T cells 409 1 110 6 0 50 144 AMD1
SE_02_074600792 chr6:110873707-110899520 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 792 8 728 75 0 113 566 AMD1
SE_02_034600332 chr6:110873711-110884249 Sample_02_0346 Blood AML10 332 2 302 33 0 50 144 AMD1
SE_02_136300477 chr6:110873742-110876932 Sample_02_1363 Blood Hudep2 477 1 93 6 0 50 144 AMD1
SE_02_140500233 chr6:110873745-110877606 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 233 1 110 6 0 50 144 AMD1
SE_01_009900776 chr6:110873803-110877772 Sample_01_0099 Colon transverse colon 776 1 112 6 0 50 144 AMD1
SE_02_074500775 chr6:110873824-110883519 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 775 2 282 29 0 50 144 AMD1
SE_00_004000911 chr6:110873867-110877184 Sample_00_0040 Spleen spleen_30y 911 1 94 5 0 50 144 AMD1
SE_02_143301308 chr6:110873891-110886398 Sample_02_1433 Bone A673 STAG2 null 1308 6 363 39 0 50 144 AMD1
SE_02_143201434 chr6:110873902-110886222 Sample_02_1432 Bone A673 STAG2 WT 1434 6 358 39 0 50 144 AMD1
SE_02_058400675 chr6:110874747-110886223 Sample_02_0584 Lung H1299 WT 675 7 341 36 0 36 102 AMD1
SE_02_111400214 chr6:110874754-110877511 Sample_02_1114 Embryonic kidney HEK293 214 1 83 2 0 35 101 AMD1
SE_02_064502173 chr6:110874764-110877836 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2173 2 92 3 0 35 101 AMD1
SE_02_066900245 chr6:110874784-110899488 Sample_02_0669 Prostate prostate cancer_DSG 245 9 701 71 0 98 521 AMD1
SE_02_140400240 chr6:110874819-110877580 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 240 1 80 2 0 35 96 AMD1
SE_02_066800145 chr6:110874845-110883509 Sample_02_0668 Prostate prostate cancer FA 145 7 252 25 0 35 95 AMD1
SE_01_011200332 chr6:110874908-110876861 Sample_01_0112 Embryonic kidney HEK293_encode 332 1 59 2 0 35 91 AMD1
SE_02_016200224 chr6:110874964-110900709 Sample_02_0162 Prostate C4-2B_vehicle_24h 224 12 732 74 0 97 511 AMD1
SE_02_016300041 chr6:110874995-110901923 Sample_02_0163 Prostate C4-2B_SR2211_24h 41 18 772 76 1 97 508 AMD1
Genomic distribution of SEs associated with AMD1
Genome Browser

The strength of the tissue affected by the gene

Expression of AMD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)