Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000160216
Gene: AGPAT3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr21:43865223-43987592 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_133000055 chr21:43804281-43894210 Sample_02_1330 Blood AMU-AML1 55 29 3103 359 7 29 1490 AGPAT3,AATBC,RRP1,CSTB
SE_02_033600082 chr21:43832921-43869439 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 82 2 1165 116 0 26 190 AGPAT3,LOC284837,RRP1
SE_02_082000292 chr21:43834187-43861105 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 292 5 902 104 0 1 0 RRP1,AGPAT3,AATBC
SE_02_082300093 chr21:43834355-43861529 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 93 5 907 102 0 1 0 RRP1,AGPAT3,AATBC
SE_02_139100341 chr21:43842605-43918693 Sample_02_1391 Peripheral blood FE-PD_ALK- 341 16 2360 169 0 29 245 AGPAT3,AATBC
SE_02_122500512 chr21:43842765-43868504 Sample_02_1225 Bone marrow RAJI 512 10 790 78 0 22 190 AGPAT3,AATBC
SE_02_139200654 chr21:43843033-43899084 Sample_02_1392 Peripheral blood Mac-2A_ALK- 654 15 1719 129 0 29 190 AGPAT3,AATBC
SE_02_104900125 chr21:43843294-43986156 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 125 103 4673 332 6 95 2245 AGPAT3,TRAPPC10,AATBC
SE_02_082200256 chr21:43849220-43861298 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 256 4 404 60 0 1 0 AGPAT3,AATBC
SE_02_109600452 chr21:43849610-43867332 Sample_02_1096 Blood CD34 Erythroid cells_Don003 452 4 540 64 0 19 190 AGPAT3,AATBC
SE_02_122900059 chr21:43850966-43940938 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 59 61 2841 199 1 33 346 AGPAT3,AATBC,RRP1
SE_04_000100589 chr21:43853151-43868364 Sample_04_0001 Blood heat shocked K562 589 3 429 37 0 22 190 AGPAT3,AATBC
SE_02_098700378 chr21:43853742-43867415 Sample_02_0987 Blood K562_Control_1 378 6 390 33 0 19 190 AGPAT3,AATBC
SE_04_000200184 chr21:43853765-43898224 Sample_04_0002 Blood cold shocked K562 184 8 1323 84 0 29 190 AGPAT3,AATBC,RRP1
SE_02_109900168 chr21:43853810-43898121 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 168 17 1316 83 0 29 190 AGPAT3,AATBC,RRP1
SE_02_103300332 chr21:43853848-43867261 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 332 3 382 33 0 19 190 AGPAT3,AATBC
SE_02_001600233 chr21:43853869-43918160 Sample_02_0016 Blood erythroblasts 233 10 1954 124 0 29 245 AGPAT3,LOC284837
SE_02_111600508 chr21:43853936-43867483 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 508 4 384 31 0 19 190 AGPAT3,AATBC
SE_02_113000495 chr21:43854029-43867845 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 495 4 385 32 0 21 190 AGPAT3,AATBC
SE_02_146700155 chr21:43854112-43897980 Sample_02_1467 Blood HUDEP-2_LRFKO 155 11 1292 79 0 29 190 AGPAT3,AATBC
SE_02_054500739 chr21:43854214-43867410 Sample_02_0545 Bone marrow K562 WT 739 5 365 29 0 19 190 AGPAT3,AATBC
SE_02_122700465 chr21:43854459-43885940 Sample_02_1227 Bone marrow U266 465 10 941 52 0 29 190 AGPAT3,AATBC
SE_02_146600550 chr21:43854461-43867700 Sample_02_1466 Blood HUDEP-2_BCL11AKO 550 5 365 28 0 20 190 AGPAT3,AATBC
SE_02_104300271 chr21:43854791-43959073 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 271 46 3328 220 3 40 741 AGPAT3,AATBC
SE_02_111400098 chr21:43857597-43867479 Sample_02_1114 Embryonic kidney HEK293 98 2 253 14 0 19 190 AGPAT3,AATBC
SE_02_082600640 chr21:43857694-43918483 Sample_02_0826 Stomach gastric tumor 640 23 1833 104 0 29 245 AGPAT3,AATBC
SE_02_143200204 chr21:43858623-43989223 Sample_02_1432 Bone A673 STAG2 WT 204 57 4237 272 6 98 2439 AGPAT3,TRAPPC10,AATBC
SE_02_143300170 chr21:43858889-43987320 Sample_02_1433 Bone A673 STAG2 null 170 62 4175 266 6 98 2371 AGPAT3,TRAPPC10,AATBC
SE_02_028400113 chr21:43859317-43992390 Sample_02_0284 Pelvis patient 119 113 29 4342 278 6 98 2439 AGPAT3,LOC284837,TRAPPC10
SE_01_007600509 chr21:43859856-43957235 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 509 13 3099 200 3 40 741 AGPAT3,LOC284837
SE_01_009400428 chr21:43859898-43956227 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 428 20 3073 196 3 40 741 AGPAT3,AATBC
SE_00_002001024 chr21:43860429-43894102 Sample_00_0020 Large intestine large-intestine_108d 1024 6 995 48 0 29 190 AGPAT3,LOC284837
SE_02_088900499 chr21:43860480-43956683 Sample_02_0889 Heart left ventricle_LV1183 499 25 3067 195 3 40 741 AGPAT3,AATBC
SE_02_108300066 chr21:43863730-43986495 Sample_02_1083 Macula macula 66 28 4019 259 6 96 2278 AGPAT3,TRAPPC10
SE_00_003600802 chr21:43864047-43894476 Sample_00_0036 Small intestine small-intestine_108days 802 5 907 43 0 28 190 AGPAT3
SE_02_047800681 chr21:43864112-43886043 Sample_02_0478 Colon normal colon mucosa 681 7 663 26 0 28 190 AGPAT3
SE_02_047700810 chr21:43864158-43885948 Sample_02_0477 Colon intestinal epithelial organoids_139a 810 7 658 26 0 28 190 AGPAT3
SE_02_094800899 chr21:43864267-43867667 Sample_02_0948 Pharyng Detroit562 899 1 81 2 0 19 190 AGPAT3
SE_02_065000939 chr21:43864308-43867277 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 939 1 69 1 0 18 190 AGPAT3
SE_02_064501271 chr21:43864341-43868464 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1271 2 95 1 0 21 190 AGPAT3
SE_02_064900951 chr21:43864445-43867403 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 951 1 66 0 0 18 190 AGPAT3
SE_00_004900512 chr21:43865054-43884913 Sample_00_0049 Small intestine small intestine 30y 512 6 607 24 0 25 179 AGPAT3
SE_01_008700730 chr21:43873327-43936696 Sample_01_0087 Thyroid gland thyroid-gland 730 10 1991 130 1 0 156 AGPAT3
SE_02_098800917 chr21:43882773-43897872 Sample_02_0988 Blood K562_EPZ 917 7 424 28 0 0 0 AGPAT3,RRP1
SE_02_098901051 chr21:43883687-43939498 Sample_02_0989 Kidney kidney cortex_WT 1051 22 1766 120 1 1 156 AGPAT3
SE_02_089801456 chr21:43884327-43957342 Sample_02_0898 Heart left ventricle_LV1356 1456 18 2377 168 3 11 551 AGPAT3
SE_02_104600344 chr21:43899538-44001514 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 344 24 3495 242 6 69 2249 AGPAT3,TRAPPC10
SE_02_104800169 chr21:43900392-43989335 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 169 25 3007 206 6 69 2249 AGPAT3,TRAPPC10
SE_01_009700441 chr21:43902123-43956745 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 441 16 1834 129 3 11 551 AGPAT3
SE_02_036700171 chr21:43902144-43957020 Sample_02_0367 Skeletal muscle NS129 171 12 1842 132 3 11 551 AGPAT3
SE_02_088801202 chr21:43902206-43939132 Sample_02_0888 Heart left ventricle_LV1160 1202 11 1205 82 1 1 156 AGPAT3
SE_02_090200645 chr21:43902302-43939185 Sample_02_0902 Heart left ventricle_LV1558 645 12 1203 82 1 1 156 AGPAT3
SE_02_088700800 chr21:43902309-43957317 Sample_02_0887 Heart left ventricle_LV1121 800 15 1844 132 3 11 551 AGPAT3
SE_02_089200637 chr21:43902344-43957211 Sample_02_0892 Heart left ventricle_LV1215 637 17 1842 132 3 11 551 AGPAT3
SE_01_009800484 chr21:43902407-43957149 Sample_01_0098 Heart left ventricle_51y 484 20 1837 132 3 11 551 AGPAT3
SE_02_036800256 chr21:43902408-43955900 Sample_02_0368 Skeletal muscle NS134 256 8 1802 128 3 11 551 AGPAT3
SE_00_004600337 chr21:43902685-43956721 Sample_00_0046 Heart right ventricle_34y 337 20 1815 128 3 11 551 AGPAT3
SE_02_089000691 chr21:43902781-43956638 Sample_02_0890 Heart left ventricle_LV1200 691 13 1806 126 3 11 551 AGPAT3
SE_02_035500472 chr21:43902914-43939508 Sample_02_0355 Colon HCT15 472 6 1191 79 1 1 156 AGPAT3
SE_02_108200289 chr21:43902925-43986159 Sample_02_1082 Retina retina 289 27 2831 193 6 66 2055 AGPAT3,TRAPPC10
SE_02_089101213 chr21:43902934-43939189 Sample_02_0891 Heart left ventricle_LV1202 1213 15 1178 79 1 1 156 AGPAT3
SE_02_003200482 chr21:43903110-43945798 Sample_02_0032 Pancreas pancreatic-islets-M 482 10 1414 100 1 9 156 AGPAT3
SE_00_005700400 chr21:43903366-43954856 Sample_00_0057 Heart right ventricle 3y 400 16 1727 124 3 11 445 AGPAT3
SE_02_039602047 chr21:43903368-44007233 Sample_02_0396 Skin NHEK-D 2047 27 3540 251 6 74 2249 AGPAT3,TRAPPC10
SE_00_002000963 chr21:43908207-43940939 Sample_00_0020 Large intestine large-intestine_108d 963 5 1059 63 1 4 101 AGPAT3
SE_00_003600962 chr21:43908511-43941000 Sample_00_0036 Small intestine small-intestine_108days 962 8 1051 64 1 4 101 AGPAT3
SE_02_001900812 chr21:43908519-43960009 Sample_02_0019 Embryo Neural crest cells 812 12 1720 111 3 22 599 AGPAT3
SE_02_003801287 chr21:43909545-43923654 Sample_02_0038 Embryo DE 1287 3 406 19 0 0 0 AGPAT3
SE_02_075500727 chr21:43909648-43939101 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 727 5 934 59 1 1 101 AGPAT3
SE_02_109900615 chr21:43913987-43939612 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 615 8 841 56 1 1 101 AGPAT3
SE_02_078100707 chr21:43914064-43942405 Sample_02_0781 Lymphoma Pfeiffer_DMSO 707 8 946 65 1 4 101 AGPAT3
SE_02_078300995 chr21:43915890-43958830 Sample_02_0783 Blood MEC2 995 8 1472 106 3 11 496 AGPAT3
SE_02_069300350 chr21:43916200-43941679 Sample_02_0693 Lung NCI-H69_no infection 350 15 870 63 1 4 101 AGPAT3
SE_02_098800752 chr21:43916474-43939218 Sample_02_0988 Blood K562_EPZ 752 5 751 54 1 1 101 AGPAT3
SE_02_144200112 chr21:43916749-43940445 Sample_02_1442 Lung H69 112 10 794 57 1 4 101 AGPAT3
SE_02_122500321 chr21:43916982-43975928 Sample_02_1225 Bone marrow RAJI 321 32 2059 143 3 50 1123 AGPAT3,TRAPPC10
SE_02_004300451 chr21:43920164-43923305 Sample_02_0043 Embryo endodermal CyT49_ES_D2 451 2 104 9 0 0 0 AGPAT3
SE_02_129200714 chr21:43921192-43936718 Sample_02_1292 Lung JHU-LX110-SCLC PDX 714 4 544 42 1 0 101 AGPAT3
SE_02_138400327 chr21:43922216-43993778 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 327 14 2521 176 6 69 2194 AGPAT3,TRAPPC10
SE_02_142200334 chr21:43922309-43939135 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 334 3 580 41 1 1 101 AGPAT3

Genomic distribution of SEs associated with AGPAT3

The strength of the tissue affected by the gene


Expression of AGPAT3