SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000159251
Gene: ACTC1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:34790230-34795549 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_074100951 chr15:34701745-34728899 Sample_02_0741 Muscle RH30 951 8 719 67 14 98 0 GJD2,LOC101928174,ACTC1
SE_01_006300282 chr15:34708361-34729921 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 282 3 570 51 9 84 0 GJD2,ACTC1
SE_01_008100801 chr15:34768682-34814448 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 801 5 1378 112 7 218 1131 ACTC1,GJD2
SE_01_011500092 chr15:34783420-34819079 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 92 13 1064 62 2 190 1087 ACTC1,LOC101928174,GJD2
SE_02_074000288 chr15:34783575-34822630 Sample_02_0740 Muscle RH3 288 10 1166 64 2 205 1087 ACTC1,LOC101928174,GJD2
SE_02_108100310 chr15:34783672-34813294 Sample_02_1081 Muscle CTR shCtrl 310 15 901 52 1 186 1087 ACTC1,LOC101928174,GJD2
SE_02_141300140 chr15:34783948-34814110 Sample_02_1413 Muscle RH4_sgBRG1 140 10 921 58 2 187 1087 ACTC1,LOC101928174,GJD2
SE_02_036600303 chr15:34786618-34811784 Sample_02_0366 Skeletal muscle NCI0082 303 4 755 46 1 184 960 ACTC1,GJD2
SE_02_092400255 chr15:34786768-34814118 Sample_02_0924 Heart fetal heart_PCW10_12569 255 6 834 54 2 187 1087 ACTC1,LOC101928174,GJD2
SE_02_074500129 chr15:34786786-34814318 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 129 11 841 53 2 187 1087 ACTC1,LOC101928174,GJD2
SE_02_090701415 chr15:34786820-34814084 Sample_02_0907 Heart left ventricle_DCM_LV1223 1415 6 831 53 2 187 1087 ACTC1,LOC101928174,GJD2
SE_01_009801092 chr15:34786884-34801389 Sample_01_0098 Heart left ventricle_51y 1092 3 428 19 0 167 800 ACTC1,LOC101928174,GJD2
SE_02_026500415 chr15:34786924-34819507 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 415 8 962 56 2 196 1087 ACTC1,GJD2
SE_02_074700544 chr15:34786972-34824244 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 544 14 1112 59 3 206 1087 ACTC1,LOC101928174,GJD2
SE_02_092100337 chr15:34787068-34814013 Sample_02_0921 Heart embryonic heart_CS22 337 5 819 52 2 187 1087 ACTC1,LOC101928174,GJD2
SE_02_074600145 chr15:34787074-34814230 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 145 8 827 52 2 187 1087 ACTC1,LOC101928174,GJD2
SE_00_005200731 chr15:34787189-34811662 Sample_00_0052 Heart left ventricle 3y 731 9 733 42 1 184 951 ACTC1,LOC101928174,GJD2
SE_00_002100706 chr15:34787256-34811747 Sample_00_0021 Lung lung_3y 706 4 734 44 1 184 958 ACTC1,GJD2
SE_02_092300449 chr15:34787701-34814202 Sample_02_0923 Heart fetal heart_PCW10_12522 449 7 798 51 2 187 1087 ACTC1,LOC101928174,GJD2
SE_02_088901534 chr15:34788167-34801095 Sample_02_0889 Heart left ventricle_LV1183 1534 3 373 16 0 166 784 ACTC1,LOC101928174,GJD2
SE_02_092500417 chr15:34788429-34814252 Sample_02_0925 Heart fetal heart_PCW17_12570 417 4 784 50 2 186 1054 ACTC1,LOC101928174,GJD2
SE_02_092200519 chr15:34788869-34814161 Sample_02_0922 Heart fetal heart_PCW10_12434 519 4 757 50 2 184 1008 ACTC1,LOC101928174,GJD2
SE_01_002300095 chr15:34788928-34815047 Sample_01_0023 Embryo cardiac-muscle-cell 95 4 789 52 2 184 1007 ACTC1,GJD2
SE_02_037200116 chr15:34789002-34811477 Sample_02_0372 Skeletal muscle RMS008 116 4 661 40 1 181 839 ACTC1,GJD2
SE_02_038000330 chr15:34789079-34813724 Sample_02_0380 Skeletal muscle RH18 330 8 740 48 2 184 994 ACTC1,GJD2
SE_02_038200492 chr15:34789109-34824663 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 492 3 1052 57 3 203 993 ACTC1,GJD2
SE_00_003401073 chr15:34789189-34811386 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1073 5 654 40 1 179 821 ACTC1,GJD2
SE_02_037800235 chr15:34789212-34803988 Sample_02_0378 Skeletal muscle SCMC 235 4 420 20 0 166 703 ACTC1,GJD2
SE_02_089801023 chr15:34789316-34813423 Sample_02_0898 Heart left ventricle_LV1356 1023 4 724 44 1 180 977 ACTC1,LOC101928174,GJD2
SE_02_156600285 chr15:34789334-34819891 Sample_02_1566 Dermal Dermal fibroblast 285 10 889 53 2 189 975 ACTC1,LOC101928174,GJD2
SE_02_091001166 chr15:34789335-34810974 Sample_02_0910 Heart left ventricle_DCM_LV1275 1166 4 630 39 1 177 745 ACTC1,LOC101928174,GJD2
SE_02_041900544 chr15:34789438-34818741 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 544 10 853 53 2 182 955 ACTC1,GJD2
SE_02_107800407 chr15:34789453-34802123 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 407 6 368 18 0 162 666 ACTC1,LOC101928174,GJD2
SE_00_005300080 chr15:34789509-34815068 Sample_00_0053 Embryo trophoblast cell originated from H1 80 18 777 52 2 180 946 ACTC1,LOC101928174,GJD2
SE_02_038100482 chr15:34790036-34814644 Sample_02_0381 Heart purified cardiomyocyte WT 482 2 748 51 2 180 908 ACTC1,GJD2
SE_02_089300966 chr15:34790174-34811432 Sample_02_0893 Heart left ventricle_LV1226 966 2 629 40 1 177 738 ACTC1,LOC101928174,GJD2
SE_02_107900358 chr15:34790254-34801026 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 358 4 309 15 0 157 598 ACTC1,LOC101928174,GJD2
SE_02_090401125 chr15:34790350-34813431 Sample_02_0904 Heart left ventricle_DCM_LV1028 1125 3 692 44 1 166 880 ACTC1,LOC101928174,GJD2
SE_00_002501084 chr15:34790629-34811536 Sample_00_0025 Muscle of leg muscle-of-leg 1084 3 618 40 1 152 686 ACTC1,GJD2
SE_01_006300190 chr15:34790721-34819376 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 190 4 834 53 2 164 836 ACTC1,GJD2
SE_02_084000658 chr15:34790787-34810307 Sample_02_0840 Embryo hNPCs_R1159Q/+ 658 7 568 38 1 152 548 ACTC1,LOC101928174,GJD2
SE_02_152700064 chr15:34791301-34815040 Sample_02_1527 Embryo naive embryonic stem cell 64 11 718 52 2 150 798 ACTC1,LOC101928174,GJD2
SE_00_002600447 chr15:34791341-34811618 Sample_00_0026 Muscle of trunk muscle-of-trunk 447 4 597 40 1 147 653 ACTC1,GJD2
SE_02_089400799 chr15:34791432-34811181 Sample_02_0894 Heart left ventricle_LV1248 799 4 576 40 1 146 596 ACTC1,LOC101928174,GJD2
SE_02_037400213 chr15:34791712-34801438 Sample_02_0374 Skeletal muscle RMS209 213 2 276 17 0 129 494 ACTC1,GJD2
SE_02_036900404 chr15:34791819-34811463 Sample_02_0369 Skeletal muscle RD 404 5 582 40 1 146 618 ACTC1,GJD2
SE_02_037900404 chr15:34791819-34811463 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 404 5 582 40 1 146 618 ACTC1,GJD2
SE_02_074100472 chr15:34791993-34811655 Sample_02_0741 Muscle RH30 472 10 580 40 1 146 632 ACTC1,LOC101928174,GJD2
SE_00_005700716 chr15:34792066-34810889 Sample_00_0057 Heart right ventricle 3y 716 8 546 37 1 146 519 ACTC1,LOC101928174,GJD2
SE_02_042000519 chr15:34792685-34814385 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 519 4 667 50 2 127 679 ACTC1,GJD2
SE_02_021000778 chr15:34796746-34829498 Sample_02_0210 Lung MRC-5_N_1DPT 778 7 969 63 3 119 287 GJD2,ACTC1
SE_02_074400940 chr15:34797650-34814286 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 940 6 522 42 2 60 287 LOC101928174,GJD2,ACTC1
SE_02_150000687 chr15:34798926-34815974 Sample_02_1500 Brain KELLY_untreat 687 7 527 44 2 59 287 LOC101928174,GJD2,ACTC1
SE_02_021101192 chr15:34798929-34829350 Sample_02_0211 Lung MRC-5_NFD_1DPT 1192 6 900 61 3 105 287 GJD2,ACTC1
SE_02_017100418 chr15:34799128-34819400 Sample_02_0171 Lung IMR-90_proliferating 418 3 596 45 2 67 287 GJD2,ACTC1
SE_02_017200929 chr15:34799290-34819381 Sample_02_0172 Lung IMR-90_quiescent 929 3 592 43 2 67 287 GJD2,ACTC1
SE_02_058900620 chr15:34799349-34814261 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 620 6 467 40 2 58 287 LOC101928174,GJD2,ACTC1
SE_02_017300986 chr15:34807880-34816812 Sample_02_0173 Lung IMR-90_senescent 986 3 277 23 1 3 287 ACTC1
SE_02_017500957 chr15:34808383-34813499 Sample_02_0175 Lung IMR-90_Etoposide 957 5 169 12 1 3 287 ACTC1
SE_02_125901065 chr15:34809668-34819355 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 1065 3 278 15 1 12 287 LOC101928174,ACTC1
SE_02_126200982 chr15:34809811-34819378 Sample_02_1262 Bone Im-GCT-3504_G34W 982 3 277 15 1 12 287 LOC101928174,ACTC1
Genomic distribution of SEs associated with ACTC1
Genome Browser

The strength of the tissue affected by the gene

Expression of ACTC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)