SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000254552
Gene: XIRP2-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr2:167123904-167140955 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_124200488 chr2:167122492-167143730 Sample_02_1242 Skin UISO_virus_negative 488 12 600 76 2 53 43 XIRP2-AS1,XIRP2
SE_02_126701380 chr2:167127675-167149010 Sample_02_1267 Bone Im-GCT-4072_G34W 1380 4 594 87 2 55 43 XIRP2-AS1,XIRP2
SE_02_048100886 chr2:167127841-167149738 Sample_02_0481 Mammary gland MDA-MB231 886 9 611 91 2 55 43 XIRP2-AS1,XIRP2
SE_02_127100473 chr2:167128945-167152583 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 473 12 666 109 2 55 43 XIRP2-AS1,XIRP2
SE_02_111300577 chr2:167133321-167143399 Sample_02_1113 Bone U2OS 577 6 272 40 1 39 43 XIRP2-AS1,XIRP2
SE_02_111500648 chr2:167133580-167143575 Sample_02_1115 Liver HepG2 648 5 275 41 1 38 43 XIRP2-AS1,XIRP2
SE_02_127200847 chr2:167135469-167152505 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 847 7 486 91 1 43 43 XIRP2-AS1,XIRP2
SE_02_075400727 chr2:167144221-167151022 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 727 3 187 45 0 7 0 XIRP2,XIRP2-AS1
SE_02_049500595 chr2:167145155-167150037 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 595 4 138 34 0 0 0 XIRP2,XIRP2-AS1
SE_02_049401066 chr2:167145714-167149627 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1066 2 111 27 0 0 0 XIRP2,XIRP2-AS1
Genomic distribution of SEs associated with XIRP2-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of XIRP2-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)