SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000070540
Gene: WIPI1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:68420948-68457513 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122400458 chr17:68417006-68466742 Sample_02_1224 Bone marrow normal plasma cell 458 23 1358 115 5 118 1232 ARSG,PRKAR1A,WIPI1,MIR635
SE_01_009400440 chr17:68428320-68492287 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 440 15 1695 174 7 104 762 WIPI1,PRKAR1A,MIR635
SE_01_007600427 chr17:68431017-68475796 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 427 2 1148 121 4 99 611 WIPI1,PRKAR1A,MIR635
SE_01_008100297 chr17:68431120-68475846 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 297 5 1146 120 4 99 611 WIPI1,PRKAR1A,MIR635
SE_01_009800219 chr17:68431313-68475497 Sample_01_0098 Heart left ventricle_51y 219 19 1129 118 4 99 611 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_088800137 chr17:68431414-68523465 Sample_02_0888 Heart left ventricle_LV1160 137 34 2389 233 7 99 1074 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_036800408 chr17:68431467-68475200 Sample_02_0368 Skeletal muscle NS134 408 11 1116 117 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_092000077 chr17:68431567-68524129 Sample_02_0920 Heart left ventricle_DCM_LV1535 77 28 2403 231 7 99 1114 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_091700291 chr17:68431665-68475064 Sample_02_0917 Heart left ventricle_DCM_LV1433 291 18 1108 114 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_090500257 chr17:68431693-68475303 Sample_02_0905 Heart left ventricle_DCM_LV1033 257 13 1113 115 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_036700368 chr17:68431732-68475249 Sample_02_0367 Skeletal muscle NS129 368 11 1113 115 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_089400146 chr17:68431799-68475151 Sample_02_0894 Heart left ventricle_LV1248 146 20 1107 115 4 99 611 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_092500307 chr17:68431822-68475543 Sample_02_0925 Heart fetal heart_PCW17_12570 307 18 1116 115 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_090900436 chr17:68431830-68475189 Sample_02_0909 Heart left ventricle_DCM_LV1264 436 17 1108 115 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_090100495 chr17:68431854-68475141 Sample_02_0901 Heart left ventricle_LV1471 495 21 1106 115 4 99 611 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_074700457 chr17:68431904-68475595 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 457 17 1114 114 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_090300322 chr17:68431906-68475305 Sample_02_0903 Heart left ventricle_DCM_LV1009 322 17 1105 114 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_089700103 chr17:68431950-68537212 Sample_02_0897 Heart left ventricle_LV1325 103 33 2730 253 7 122 1770 FAM20A,WIPI1,PRKAR1A,MIR635
SE_02_087500110 chr17:68432088-68534077 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 110 39 2650 250 7 122 1529 PRKAR1A,WIPI1,MIR635,FAM20A
SE_01_009700431 chr17:68432185-68475131 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 431 12 1095 114 4 99 611 WIPI1,PRKAR1A,MIR635
SE_02_123400190 chr17:68434189-68466269 Sample_02_1234 Mammary gland T47D_Full 190 16 831 84 3 99 563 WIPI1,PRKAR1A,MIR635
SE_02_022200246 chr17:68435314-68489360 Sample_02_0222 Blood DU-528 246 4 1389 141 6 97 505 WIPI1,PRKAR1A,MIR635
SE_01_002100202 chr17:68435480-68462210 Sample_01_0021 Skin bipolar-neuron 202 7 655 70 3 97 498 WIPI1,PRKAR1A,MIR635
SE_02_121900144 chr17:68435546-68498150 Sample_02_1219 Bone marrow H929 144 12 1600 156 6 97 488 WIPI1,PRKAR1A,MIR635
SE_00_005200592 chr17:68435863-68474946 Sample_00_0052 Heart left ventricle 3y 592 23 974 95 4 94 435 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_156901000 chr17:68435967-68453518 Sample_02_1569 Endothelial Endothelial cells 1000 5 451 50 2 51 260 WIPI1,PRKAR1A,MIR635
SE_02_057900219 chr17:68436075-68474495 Sample_02_0579 Blood HEL_sgNeg2 219 9 955 93 4 93 432 WIPI1,PRKAR1A,MIR635
SE_02_057600254 chr17:68436092-68475192 Sample_02_0576 Blood HEL_sgLKB1e2 254 12 974 97 4 93 432 WIPI1,PRKAR1A,MIR635
SE_02_058000147 chr17:68436135-68514977 Sample_02_0580 Blood HEL_sgSIK3e4 147 17 1989 190 6 93 771 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_080900479 chr17:68436146-68463010 Sample_02_0809 Mammary gland T47D Serum 479 7 654 69 3 92 432 WIPI1,PRKAR1A,MIR635
SE_01_011500738 chr17:68436195-68469618 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 738 6 846 85 3 92 429 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_145500769 chr17:68436267-68457497 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 769 5 532 60 2 83 327 WIPI1,PRKAR1A,MIR635
SE_00_004600651 chr17:68436275-68474880 Sample_00_0046 Heart right ventricle_34y 651 14 957 91 4 92 420 WIPI1,PRKAR1A,MIR635,ARSG
SE_02_035900633 chr17:68436497-68475862 Sample_02_0359 Colon Colo741 633 7 982 96 4 80 375 WIPI1,PRKAR1A,MIR635
SE_02_091600121 chr17:68436499-68524024 Sample_02_0916 Heart left ventricle_DCM_LV1392 121 37 2251 210 7 80 864 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_089000428 chr17:68436548-68492293 Sample_02_0890 Heart left ventricle_LV1200 428 18 1427 144 6 80 367 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_129700503 chr17:68436613-68463072 Sample_02_1297 Lung lung 503 15 645 67 3 78 359 WIPI1,PRKAR1A,MIR635
SE_02_101800382 chr17:68436679-68459961 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 382 4 579 64 3 78 353 WIPI1,PRKAR1A,MIR635
SE_02_053200235 chr17:68437148-68464364 Sample_02_0532 Mammary gland T47D 235 8 659 68 3 78 353 WIPI1,PRKAR1A,MIR635
SE_02_091800103 chr17:68437218-68523989 Sample_02_0918 Heart left ventricle_DCM_LV1437 103 32 2224 207 7 78 841 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_038100475 chr17:68437441-68475847 Sample_02_0381 Heart purified cardiomyocyte WT 475 4 950 91 4 78 353 WIPI1,PRKAR1A,MIR635
SE_02_092200461 chr17:68437519-68475421 Sample_02_0922 Heart fetal heart_PCW10_12434 461 17 934 89 4 78 353 WIPI1,PRKAR1A,MIR635
SE_02_038200385 chr17:68437535-68476911 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 385 5 973 92 4 78 353 WIPI1,PRKAR1A,MIR635
SE_02_091500773 chr17:68437566-68469567 Sample_02_0915 Heart left ventricle_DCM_LV1371 773 15 803 78 3 78 353 WIPI1,PRKAR1A,MIR635
SE_01_006900386 chr17:68437573-68515823 Sample_01_0069 Adrenal gland adrenal-gland 386 10 1967 185 6 78 757 WIPI1,PRKAR1A,FAM20A,MIR635
SE_02_089500282 chr17:68437628-68498619 Sample_02_0895 Heart left ventricle_LV1259 282 14 1548 148 6 76 353 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_092400365 chr17:68437688-68475522 Sample_02_0924 Heart fetal heart_PCW10_12569 365 9 935 89 4 76 353 WIPI1,PRKAR1A,MIR635
SE_02_018500895 chr17:68437910-68475944 Sample_02_0185 Skin UACC257 895 8 943 91 4 76 353 WIPI1,PRKAR1A,MIR635
SE_02_074600741 chr17:68438007-68474895 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 741 8 911 86 4 76 353 WIPI1,PRKAR1A,MIR635
SE_02_091400159 chr17:68438055-68523613 Sample_02_0914 Heart left ventricle_DCM_LV1342 159 23 2196 205 7 76 817 PRKAR1A,WIPI1,MIR635,FAM20A
SE_02_021100698 chr17:68438085-68459626 Sample_02_0211 Lung MRC-5_NFD_1DPT 698 5 531 58 2 76 353 WIPI1,MIR635
SE_02_146500219 chr17:68438393-68463014 Sample_02_1465 Ovary CAOV4cis 219 11 586 61 3 74 353 WIPI1,PRKAR1A,MIR635
SE_01_008801024 chr17:68439821-68458796 Sample_01_0088 Tibial nerve tibial-nerve 1024 3 467 54 2 68 353 WIPI1,MIR635
SE_02_018400838 chr17:68449104-68475756 Sample_02_0184 Skin SKMEL30 838 6 662 65 3 56 311 WIPI1,PRKAR1A,MIR635
SE_02_149300169 chr17:68452795-68475764 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 169 9 551 52 3 47 214 WIPI1,PRKAR1A,MIR635
SE_02_122300220 chr17:68453833-68466253 Sample_02_1223 Bone marrow KMS28BM 220 6 303 26 1 42 172 WIPI1,PRKAR1A,MIR635
SE_02_057201264 chr17:68454969-68474938 Sample_02_0572 Brain LN229_1_mM_glucose 1264 5 487 43 2 34 172 WIPI1,PRKAR1A,MIR635
SE_02_122700391 chr17:68454996-68509995 Sample_02_1227 Bone marrow U266 391 13 1389 127 4 34 172 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_099800448 chr17:68455244-68509910 Sample_02_0998 Lymphoma OCI-LY1_DMSO 448 35 1377 126 4 34 172 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_099900596 chr17:68455296-68509586 Sample_02_0999 Lymphoma OCI-LY1_966 596 23 1365 125 4 34 172 WIPI1,PRKAR1A,MIR635,FAM20A
SE_02_145201112 chr17:68455462-68468826 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1112 2 342 31 1 34 172 WIPI1,PRKAR1A,MIR635
SE_02_092301180 chr17:68460144-68475672 Sample_02_0923 Heart fetal heart_PCW10_12522 1180 7 385 30 1 0 0 PRKAR1A,MIR635,WIPI1
SE_02_055701080 chr17:68466883-68475270 Sample_02_0557 iPSCs WT hiPSC#1 1080 3 196 20 1 0 0 PRKAR1A,MIR635,WIPI1
SE_02_049401303 chr17:68480860-68485534 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1303 5 134 17 1 0 0 PRKAR1A,WIPI1
Genomic distribution of SEs associated with WIPI1
Genome Browser

The strength of the tissue affected by the gene

Expression of WIPI1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)