SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000078900
Gene: TP73 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:3652516-3736201 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110600023 chr1:3631416-3744961 Sample_02_1106 Brain NGP 23 32 4117 239 9 325 5134 TP73-AS1,TP73,WRAP73,CCDC27,SMIM1,MEGF6,TPRG1L
SE_02_142900820 chr1:3648083-3678937 Sample_02_1429 Blood GM12878_WT 820 9 1064 71 4 57 281 WRAP73,TP73,MEGF6,TPRG1L,CCDC27,C1orf174
SE_02_032100090 chr1:3649384-3679728 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 90 3 1068 70 4 57 281 WDR8,TP73,MEGF6,TPRG1L
SE_02_032000170 chr1:3649437-3679405 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 170 3 1056 70 4 57 281 WDR8,TP73,MEGF6,TPRG1L
SE_02_078400313 chr1:3650501-3680044 Sample_02_0784 Blood OSU-CLL 313 10 1028 68 4 51 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_107500116 chr1:3650506-3688623 Sample_02_1075 Lymphoma BC-3 116 8 1345 85 4 79 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_027500363 chr1:3650532-3733865 Sample_02_0275 Retina FW14 363 12 3041 166 7 303 2436 TP73,KIAA0495,TPRG1L,CCDC27,LOC388588,MEGF6,WDR8
SE_02_139200138 chr1:3651156-3689878 Sample_02_1392 Peripheral blood Mac-2A_ALK- 138 9 1387 86 4 78 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_138700261 chr1:3651330-3688445 Sample_02_1387 Peripheral blood Mac-1_ALK- 261 13 1317 84 4 78 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_107400142 chr1:3651656-3681156 Sample_02_1074 Lymphoma BC-1 142 11 1037 68 4 48 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_138900375 chr1:3651676-3678877 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 375 4 958 66 4 48 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_123800007 chr1:3651688-3722342 Sample_02_1238 Skin MS1_virus_positive 7 20 2599 130 6 232 1071 TP73,CCDC27,TP73-AS1,MEGF6,WRAP73,TPRG1L,SMIM1,DFFB,ARHGEF16,CEP104,LRRC47,C1orf174
SE_02_123900175 chr1:3652007-3693321 Sample_02_1239 Skin Waga_virus_positive 175 14 1504 91 4 85 532 TP73,MEGF6,TPRG1L,WRAP73
SE_02_110800165 chr1:3654319-3735917 Sample_02_1108 Brain SK-N-BE_2_-C 165 31 3004 167 9 295 2748 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_115600110 chr1:3654490-3678945 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 110 15 869 64 4 40 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_110500144 chr1:3654641-3741092 Sample_02_1105 Brain NBL-S 144 33 3184 174 9 298 3459 TP73,TP73-AS1,CCDC27,SMIM1,MEGF6,WRAP73,TPRG1L
SE_02_139100220 chr1:3654661-3689643 Sample_02_1391 Peripheral blood FE-PD_ALK- 220 4 1269 83 4 68 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_078200580 chr1:3655012-3679635 Sample_02_0782 Blood MEC1 580 6 885 63 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_068600008 chr1:3655091-3735841 Sample_02_0686 Lung NCI-H128_no infection 8 40 2970 166 9 283 2726 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_122500498 chr1:3655342-3681504 Sample_02_1225 Bone marrow RAJI 498 10 924 65 4 35 0 TP73,MEGF6,TPRG1L,WRAP73,C1orf174
SE_02_073300273 chr1:3655551-3689376 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 273 14 1221 81 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_028800647 chr1:3655577-3678513 Sample_02_0288 Tonsil CB5_H3K27Ac 647 5 807 62 4 28 0 TP73,WDR8,MEGF6,TPRG1L
SE_02_072800456 chr1:3655658-3688517 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 456 11 1176 78 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_122400691 chr1:3655718-3677635 Sample_02_1224 Bone marrow normal plasma cell 691 11 774 58 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_072900266 chr1:3655718-3688465 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 266 9 1170 78 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073000468 chr1:3656188-3679107 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 468 4 807 60 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_115700126 chr1:3656193-3679013 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 126 18 805 60 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073100410 chr1:3656212-3679301 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 410 6 817 59 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073200380 chr1:3656249-3679365 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 380 6 820 59 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_030300278 chr1:3657191-3720180 Sample_02_0303 Neuroblastoma LAN1 278 10 2328 118 6 196 803 TP73,KIAA0495,TPRG1L,CCDC27,MEGF6,WDR8
SE_02_030900094 chr1:3657548-3720610 Sample_02_0309 Neuroblastoma SJNB6 94 10 2331 118 6 196 803 TP73,KIAA0495,TPRG1L,CCDC27,MEGF6,WDR8
SE_02_150000686 chr1:3657858-3719804 Sample_02_1500 Brain KELLY_untreat 686 16 2289 115 6 196 803 TP73,CCDC27,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_046200029 chr1:3657948-3735858 Sample_02_0462 Lung NCI-H2171 cells 29 31 2860 158 9 281 2726 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_011800343 chr1:3662682-3678522 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 343 3 574 32 2 26 0 TP73,WDR8,TPRG1L
SE_02_068400126 chr1:3663655-3722588 Sample_02_0684 Lung DMS79 126 22 2193 95 4 210 952 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_121800879 chr1:3663733-3678804 Sample_02_1218 Bone marrow Daudi 879 6 544 29 2 26 0 TP73,TPRG1L,WRAP73,C1orf174
SE_02_133000707 chr1:3663791-3688232 Sample_02_1330 Blood AMU-AML1 707 9 882 46 2 54 233 TP73,TPRG1L,WRAP73
SE_02_044100398 chr1:3664004-3703494 Sample_02_0441 Bone M112 398 14 1485 71 3 88 494 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_050500048 chr1:3664020-3728874 Sample_02_0505 Esophagus KYSE70_1 48 25 2374 107 4 230 1442 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_051600048 chr1:3664020-3728874 Sample_02_0516 Esophagus KYSE70 48 23 2374 107 4 230 1442 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_146001312 chr1:3664110-3680713 Sample_02_1460 Blood Mutz-3 1312 10 603 29 2 25 0 TP73,TPRG1L,WRAP73
SE_02_103900448 chr1:3664188-3677586 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 448 9 484 24 2 25 0 TP73,TPRG1L,WRAP73
SE_02_050600083 chr1:3664231-3724902 Sample_02_0506 Esophagus TE5_1 83 17 2245 95 4 215 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_102700085 chr1:3664307-3719843 Sample_02_1027 Esophagus KYSE180_1 85 22 2072 83 4 194 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_073500468 chr1:3664478-3688892 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 468 10 894 40 2 49 233 TP73,TPRG1L,WRAP73
SE_02_021600088 chr1:3664509-3718124 Sample_02_0216 Skin NHEK_scramble 88 15 2015 77 4 185 803 TP73,KIAA0495,TPRG1L,CCDC27,WDR8
SE_02_047900534 chr1:3666943-3718706 Sample_02_0479 Head and neck SCC25 534 16 1950 74 4 172 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_153900027 chr1:3668065-3724211 Sample_02_1539 Nasopharyngeal C666-1 27 22 2087 84 4 197 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_051700080 chr1:3668570-3735067 Sample_02_0517 Esophagus TE5 80 17 2467 121 7 261 2565 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_154100234 chr1:3669411-3718665 Sample_02_1541 Nasopharyngeal HNE1 234 15 1853 73 4 172 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_087400312 chr1:3670840-3688337 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 312 6 631 31 2 34 233 TP73,TPRG1L,WRAP73
SE_02_067900341 chr1:3671149-3684623 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 341 6 474 24 1 19 233 TP73,TPRG1L,WRAP73
SE_02_113100717 chr1:3671500-3718013 Sample_02_1131 Pancreas T3M4 wt 717 15 1756 68 3 169 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_050400213 chr1:3674588-3724393 Sample_02_0504 Esophagus KYSE510_1 213 24 1830 74 3 190 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_043600168 chr1:3680131-3719331 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 168 5 1484 58 2 166 803 TP73,KIAA0495,CCDC27,WDR8
SE_02_022800218 chr1:3680214-3719772 Sample_02_0228 Oesophagus KYSE510 218 9 1497 59 2 170 803 TP73,KIAA0495,CCDC27,WDR8
SE_02_005700381 chr1:3680720-3718593 Sample_02_0057 Mammary gland vHMEC 381 9 1445 54 2 165 803 TP73,KIAA0495,CCDC27,WDR8
SE_02_043900773 chr1:3681170-3718003 Sample_02_0439 Bone Hu09 773 10 1418 53 2 162 803 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_022500177 chr1:3685984-3721480 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 177 3 1364 47 2 147 570 TP73,KIAA0495,CCDC27,WDR8
SE_02_129200406 chr1:3687174-3692693 Sample_02_1292 Lung JHU-LX110-SCLC PDX 406 3 237 7 0 13 157 TP73,WRAP73
SE_01_006100038 chr1:3688418-3732320 Sample_01_0061 Prostate RWPE1 38 4 1638 76 2 206 1742 TP73,KIAA0495,CCDC27,LOC388588,WDR8
SE_02_095700072 chr1:3689199-3735942 Sample_02_0957 Brain 429_Tumor_H3.3K27WT 72 16 1731 84 5 227 2521 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73
SE_02_096900301 chr1:3692556-3732724 Sample_02_0969 Brain H3.3K27M_PL637 301 13 1474 70 2 198 1637 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73
SE_02_102501012 chr1:3697695-3719871 Sample_02_1025 Esophagus KYSE150 1012 12 830 30 2 133 413 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_029400789 chr1:3697909-3719367 Sample_02_0294 Pancreatic L3-6_DMSO 789 3 803 28 2 129 395 TP73,KIAA0495,CCDC27,WDR8
SE_02_029300226 chr1:3697947-3719754 Sample_02_0293 Pancreatic L3-6_4SC-202 226 2 815 29 2 133 386 TP73,KIAA0495,CCDC27,WDR8
SE_02_005600505 chr1:3698056-3718895 Sample_02_0056 Mammary gland HMEC 505 7 783 26 2 128 365 TP73,KIAA0495,CCDC27,WDR8
SE_02_059600334 chr1:3698158-3718545 Sample_02_0596 Mammary gland MCF10A_ DMSO 334 6 775 26 2 128 347 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_060000192 chr1:3698242-3718435 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 192 5 768 26 2 128 326 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_022700266 chr1:3698299-3712653 Sample_02_0227 Oesophagus TE7 266 7 567 20 2 97 317 TP73,KIAA0495,CCDC27,WDR8
SE_02_060100179 chr1:3698307-3718192 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 179 6 758 25 2 127 311 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_059500160 chr1:3698334-3718269 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 160 5 760 25 2 128 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_060400207 chr1:3699232-3718210 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 207 5 709 22 2 115 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_048001096 chr1:3699318-3718186 Sample_02_0480 Gingival epithelial HGEP 1096 7 706 22 2 111 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_021500067 chr1:3701188-3730907 Sample_02_0215 Skin NHEK_siGRHL3 67 6 1061 48 1 169 1296 TP73,KIAA0495,CCDC27,LOC388588
SE_02_039600554 chr1:3701650-3719770 Sample_02_0396 Skin NHEK-D 554 1 660 22 1 116 309 TP73,CCDC27,KIAA0495
SE_02_050700395 chr1:3702121-3717939 Sample_02_0507 Esophagus TE7_1 395 9 595 17 1 109 309 TP73,CCDC27,TP73-AS1
SE_02_094700606 chr1:3702125-3718316 Sample_02_0947 Tongue Cal27 606 6 609 17 1 111 309 TP73,CCDC27,TP73-AS1
SE_02_130500440 chr1:3702155-3718662 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 440 8 613 17 1 111 309 TP73,CCDC27,TP73-AS1
SE_02_010600291 chr1:3702162-3733534 Sample_02_0106 Skin NHEK_M 291 9 1139 59 2 198 1728 TP73,KIAA0495,CCDC27,LOC388588
SE_02_072500186 chr1:3702849-3718234 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 186 7 582 14 1 104 309 TP73,CCDC27,TP73-AS1
SE_02_114400202 chr1:3703183-3718501 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 202 3 579 15 1 103 309 TP73,CCDC27,TP73-AS1
SE_02_104801744 chr1:3703926-3721905 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1744 4 655 17 1 102 323 TP73,CCDC27,TP73-AS1
SE_02_096600769 chr1:3705465-3732425 Sample_02_0966 Brain H3.3K27M_JN29-BS3 769 14 962 48 1 166 1481 TP73,CCDC27,SMIM1,TP73-AS1
Genomic distribution of SEs associated with TP73
Genome Browser

The strength of the tissue affected by the gene

Expression of TP73

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)