SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000133687
Gene: TMTC1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:29500840-29784759 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_040100009 chr12:29600425-29807322 Sample_02_0401 Mammary gland SUM159PT-T47D 9 33 6057 410 34 272 1164 TMTC1
SE_02_110900256 chr12:29671870-29751896 Sample_02_1109 Brain SK-N-FI 256 26 2276 179 10 115 129 TMTC1
SE_02_031400118 chr12:29673519-29745062 Sample_02_0314 Neuroblastoma SK-N-FI 118 9 2051 166 9 98 24 TMTC1
SE_02_090800786 chr12:29688885-29764162 Sample_02_0908 Heart left ventricle_DCM_LV1262 786 39 2066 119 10 127 224 TMTC1
SE_02_151700170 chr12:29701123-29745574 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 170 11 1211 64 7 64 36 TMTC1
SE_02_046501148 chr12:29701146-29781903 Sample_02_0465 Adipose subcutaneous adipocytes 1148 27 2134 127 30 120 247 TMTC1
SE_02_046600842 chr12:29701166-29782143 Sample_02_0466 Adipose visceral adipocytes 842 29 2138 128 30 120 247 TMTC1
SE_02_086800172 chr12:29701486-29782235 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 172 41 2134 128 30 121 247 TMTC1
SE_02_156001317 chr12:29705079-29736598 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1317 12 805 48 6 41 0 TMTC1
SE_02_090600718 chr12:29705735-29763923 Sample_02_0906 Heart left ventricle_DCM_LV1072 718 17 1536 75 8 96 224 TMTC1
SE_02_091200725 chr12:29705983-29763949 Sample_02_0912 Heart left ventricle_DCM_LV1300 725 17 1534 75 8 96 224 TMTC1
SE_02_028000216 chr12:29706796-29758435 Sample_02_0280 Mammary gland SUM159_DMSO_24h 216 6 1367 67 8 87 187 TMTC1
SE_02_040200082 chr12:29707483-29807383 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 82 12 2833 174 29 161 753 TMTC1
SE_02_081500226 chr12:29707675-29745573 Sample_02_0815 Mammary gland SUM159PT 226 11 1023 51 6 60 36 TMTC1
SE_02_091500662 chr12:29708547-29745067 Sample_02_0915 Heart left ventricle_DCM_LV1371 662 17 981 50 6 56 25 TMTC1
SE_02_090700989 chr12:29708749-29763994 Sample_02_0907 Heart left ventricle_DCM_LV1223 989 18 1471 71 8 92 224 TMTC1
SE_01_007600751 chr12:29708933-29764363 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 751 7 1477 72 9 93 224 TMTC1
SE_02_151600055 chr12:29708984-29747026 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 55 12 1035 52 6 56 36 TMTC1
SE_02_091400295 chr12:29708999-29745108 Sample_02_0914 Heart left ventricle_DCM_LV1342 295 19 977 49 6 56 31 TMTC1
SE_01_008101039 chr12:29709042-29764335 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 1039 8 1475 72 9 93 224 TMTC1
SE_02_151500102 chr12:29709143-29782803 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 102 16 1939 118 29 118 272 TMTC1
SE_02_091600331 chr12:29709150-29763002 Sample_02_0916 Heart left ventricle_DCM_LV1392 331 17 1429 69 8 89 224 TMTC1
SE_02_088900682 chr12:29709300-29764051 Sample_02_0889 Heart left ventricle_LV1183 682 20 1461 70 8 92 224 TMTC1
SE_02_091000507 chr12:29709394-29764013 Sample_02_0910 Heart left ventricle_DCM_LV1275 507 20 1458 70 8 92 224 TMTC1
SE_02_091100933 chr12:29709425-29764051 Sample_02_0911 Heart left ventricle_DCM_LV1290 933 17 1459 70 8 92 224 TMTC1
SE_02_090000479 chr12:29709467-29763796 Sample_02_0900 Heart left ventricle_LV1452 479 26 1448 69 8 92 224 TMTC1
SE_02_089300524 chr12:29709521-29763514 Sample_02_0893 Heart left ventricle_LV1226 524 21 1442 69 8 89 224 TMTC1
SE_02_021000495 chr12:29709536-29746193 Sample_02_0210 Lung MRC-5_N_1DPT 495 10 1010 51 6 56 36 TMTC1
SE_02_090501135 chr12:29709563-29763857 Sample_02_0905 Heart left ventricle_DCM_LV1033 1135 18 1448 69 8 92 224 TMTC1
SE_02_089700421 chr12:29709564-29764039 Sample_02_0897 Heart left ventricle_LV1325 421 24 1455 70 8 92 224 TMTC1
SE_02_039900290 chr12:29709577-29751759 Sample_02_0399 Mammary gland SUM159PT-BT-474 290 7 1131 56 7 65 89 TMTC1
SE_02_091900644 chr12:29709583-29764015 Sample_02_0919 Heart left ventricle_DCM_LV1532 644 14 1455 70 8 92 224 TMTC1
SE_02_084000972 chr12:29709603-29745139 Sample_02_0840 Embryo hNPCs_R1159Q/+ 972 12 967 49 6 56 31 TMTC1
SE_02_092000415 chr12:29709658-29744980 Sample_02_0920 Heart left ventricle_DCM_LV1535 415 18 957 49 6 56 14 TMTC1
SE_02_102100049 chr12:29709661-29807191 Sample_02_1021 Mammary gland SUM159R 49 27 2792 173 29 157 753 TMTC1
SE_02_089500256 chr12:29709699-29763978 Sample_02_0895 Heart left ventricle_LV1259 256 11 1452 70 8 92 224 TMTC1
SE_02_089100800 chr12:29709701-29763982 Sample_02_0891 Heart left ventricle_LV1202 800 21 1452 70 8 92 224 TMTC1
SE_02_091800435 chr12:29709725-29763628 Sample_02_0918 Heart left ventricle_DCM_LV1437 435 20 1439 69 8 92 224 TMTC1
SE_02_102000177 chr12:29709741-29745276 Sample_02_1020 Mammary gland SUM159 177 13 969 50 6 56 36 TMTC1
SE_02_089600814 chr12:29709788-29763580 Sample_02_0896 Heart left ventricle_LV1294 814 21 1438 69 8 92 224 TMTC1
SE_02_089801192 chr12:29709804-29763745 Sample_02_0898 Heart left ventricle_LV1356 1192 18 1441 69 8 92 224 TMTC1
SE_02_112900471 chr12:29709808-29751738 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 471 18 1127 56 7 65 88 TMTC1
SE_02_089000538 chr12:29709808-29763911 Sample_02_0890 Heart left ventricle_LV1200 538 18 1447 70 8 92 224 TMTC1
SE_02_088800868 chr12:29709817-29763962 Sample_02_0888 Heart left ventricle_LV1160 868 19 1450 70 8 92 224 TMTC1
SE_02_059000736 chr12:29709888-29726533 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 736 11 421 32 3 13 0 TMTC1
SE_02_089200593 chr12:29709902-29763797 Sample_02_0892 Heart left ventricle_LV1215 593 21 1440 69 8 92 224 TMTC1
SE_02_058900136 chr12:29709922-29754932 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 136 9 1211 62 7 71 143 TMTC1
SE_01_009700768 chr12:29709942-29763967 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 768 17 1448 70 8 92 224 TMTC1
SE_02_088700464 chr12:29709985-29763089 Sample_02_0887 Heart left ventricle_LV1121 464 15 1419 69 8 89 224 TMTC1
SE_02_153200717 chr12:29709997-29745252 Sample_02_1532 Mammary gland MCF10A 717 5 963 49 6 56 36 TMTC1
SE_02_090200714 chr12:29710005-29763974 Sample_02_0902 Heart left ventricle_LV1558 714 18 1445 70 8 92 224 TMTC1
SE_02_131100421 chr12:29710016-29758313 Sample_02_1311 Bone marrow HDMSCs 421 9 1294 63 8 83 187 TMTC1
SE_02_053000201 chr12:29710114-29783615 Sample_02_0530 Mammary gland MCF10A 201 19 1933 118 29 128 441 TMTC1
SE_02_056900787 chr12:29710126-29773459 Sample_02_0569 Periodontal ligament mesenchymal stem cell 787 18 1698 100 27 102 247 TMTC1
SE_02_049900708 chr12:29710204-29769116 Sample_02_0499 Fetal lung IMR90 IR Senescence 708 18 1582 90 19 100 247 TMTC1
SE_01_001800043 chr12:29711891-29783905 Sample_01_0018 Submandibular Salivary Gland ACC112 43 7 1906 115 29 128 528 TMTC1
SE_02_009300575 chr12:29712097-29745094 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 575 5 920 45 6 54 28 TMTC1
SE_02_131000373 chr12:29712591-29797650 Sample_02_1310 Bone marrow ASMSCs 373 10 2442 162 29 151 753 TMTC1
SE_02_089900555 chr12:29723483-29763867 Sample_02_0899 Heart left ventricle_LV1400 555 19 1113 46 5 90 224 TMTC1
SE_02_010700295 chr12:29724903-29785273 Sample_02_0107 Endometrium EEC16 295 7 1613 96 26 140 753 TMTC1
SE_02_089400637 chr12:29724913-29763761 Sample_02_0894 Heart left ventricle_LV1248 637 11 1069 41 5 90 224 TMTC1
SE_02_011100500 chr12:29724928-29746467 Sample_02_0111 Ovaries IOE4 500 3 635 23 3 54 36 TMTC1
SE_02_042000251 chr12:29725238-29769364 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 251 7 1216 63 17 98 247 TMTC1
SE_02_143601010 chr12:29725277-29754754 Sample_02_1436 Liver LSEC-Ctrl 1010 6 820 34 4 69 143 TMTC1
SE_02_041900697 chr12:29725318-29745154 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 697 4 574 20 3 54 33 TMTC1
SE_02_156800548 chr12:29725324-29744965 Sample_02_1568 Heart Cardiac progenitor cells 548 4 566 20 3 54 11 TMTC1
SE_02_092201081 chr12:29725347-29756234 Sample_02_0922 Heart fetal heart_PCW10_12434 1081 6 860 33 4 76 187 TMTC1
SE_02_005700128 chr12:29725366-29784937 Sample_02_0057 Mammary gland vHMEC 128 7 1586 93 26 140 753 TMTC1
SE_02_143800990 chr12:29725394-29769222 Sample_02_1438 Liver LSEC 990 11 1207 62 17 98 247 TMTC1
SE_02_137800827 chr12:29725434-29752954 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 827 13 758 30 4 69 143 TMTC1
SE_02_154800594 chr12:29725435-29753195 Sample_02_1548 Gastrointestinal Stromal GIST-226 594 11 765 31 4 69 143 TMTC1
SE_02_092300916 chr12:29725544-29763703 Sample_02_0923 Heart fetal heart_PCW10_12522 916 10 1046 40 5 89 224 TMTC1
SE_02_005600448 chr12:29725901-29773541 Sample_02_0056 Mammary gland HMEC 448 9 1303 71 24 94 247 TMTC1
SE_01_004501110 chr12:29731647-29757813 Sample_01_0045 Mammary gland mammary-epithelial-cell 1110 3 720 26 3 60 187 TMTC1
SE_02_017300621 chr12:29732066-29746109 Sample_02_0173 Lung IMR-90_senescent 621 3 427 14 1 29 36 TMTC1
SE_02_066100443 chr12:29732115-29782109 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 443 15 1339 77 24 85 247 TMTC1
SE_02_066001021 chr12:29732327-29807829 Sample_02_0660 Mammary gland MCF10DCIS 1021 14 2225 136 24 130 753 TMTC1
SE_02_060200134 chr12:29732804-29810525 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 134 12 2310 135 24 131 753 TMTC1
SE_02_060300577 chr12:29732816-29757300 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 577 4 674 24 2 52 187 TMTC1
SE_02_059000630 chr12:29740341-29754914 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 630 6 383 16 1 27 143 TMTC1
SE_02_060400253 chr12:29740678-29769187 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 253 4 754 45 14 56 247 TMTC1
SE_02_060000628 chr12:29740729-29769239 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 628 4 758 45 14 56 247 TMTC1
SE_02_031300477 chr12:29761711-29800802 Sample_02_0313 Neuroblastoma SK-N-DZ 477 5 1199 104 21 71 529 TMTC1
SE_02_031400587 chr12:29767773-29801072 Sample_02_0314 Neuroblastoma SK-N-FI 587 3 1031 81 11 61 528 TMTC1
SE_02_036900743 chr12:29769087-29784833 Sample_02_0369 Skeletal muscle RD 743 2 384 32 10 42 486 TMTC1
SE_02_037900743 chr12:29769087-29784833 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 743 2 384 32 10 42 486 TMTC1
SE_02_074100566 chr12:29989434-30027649 Sample_02_0741 Muscle RH30 566 9 1052 57 7 48 0 TMTC1
SE_02_059401144 chr12:29989870-30070642 Sample_02_0594 iPSC-derived neural progenitors 1144 15 2488 73 14 85 0 TMTC1
SE_02_031300357 chr12:29997682-30023231 Sample_02_0313 Neuroblastoma SK-N-DZ 357 3 670 23 7 44 0 TMTC1
SE_02_017700209 chr12:29999104-30031517 Sample_02_0177 Urinary bladder J82 209 2 856 24 9 47 0 TMTC1
SE_02_003000309 chr12:29999607-30012012 Sample_02_0030 Kidney human kidney proximal tubule cells 309 3 307 20 3 19 0 TMTC1
SE_02_059000515 chr12:30010306-30028020 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 515 5 485 5 4 37 0 TMTC1
SE_02_075201169 chr12:30056317-30077629 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1169 4 724 8 3 1 0 TMTC1
SE_02_037000121 chr12:30105339-30128931 Sample_02_0370 Skeletal muscle RH4 121 7 748 22 2 24 0 TMTC1
SE_02_074100451 chr12:30105427-30113099 Sample_02_0741 Muscle RH30 451 3 276 12 0 9 0 TMTC1
Genomic distribution of SEs associated with TMTC1
Genome Browser

The strength of the tissue affected by the gene

Expression of TMTC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)