SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000170537
Gene: TMC7 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:18983934-19063942 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077502170 chr16:18944121-19010491 Sample_02_0775 Pancreas EndoC-BH1_SE 2170 12 1994 171 3 25 269 TMC7,SMG1
SE_02_103501079 chr16:18979140-19029976 Sample_02_1035 Mammary gland HCC70_Vehicle 1079 21 1497 136 4 23 407 TMC7,LOC102723385,COQ7
SE_02_136500090 chr16:18979953-19014851 Sample_02_1365 Pancreas AsPC1-untreated 90 10 1047 91 3 14 269 TMC7
SE_02_105500135 chr16:18983314-19008592 Sample_02_1055 Esophagus KYAE1 135 7 769 71 2 14 211 TMC7
SE_02_059401147 chr16:18983383-19010465 Sample_02_0594 iPSC-derived neural progenitors 1147 4 824 76 2 14 269 TMC7
SE_02_002100647 chr16:18983630-19007494 Sample_02_0021 Colon V429 647 3 743 67 1 12 211 TMC7
SE_02_085700769 chr16:18983829-19009058 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 769 3 768 68 1 14 201 TMC7
SE_04_001000684 chr16:18983855-19006866 Sample_04_0010 Lung A549 TGFb 684 5 721 65 1 12 191 TMC7
SE_02_094800813 chr16:18983868-19009469 Sample_02_0948 Pharyng Detroit562 813 6 784 69 1 14 235 TMC7
SE_02_151400092 chr16:18984138-19002186 Sample_02_1514 Lung Differentiated AT1-like cells 92 6 582 54 0 5 109 TMC7,ITPRIPL2
SE_02_151300181 chr16:18984189-19001711 Sample_02_1513 Lung Transitional AT2->1 cells 181 6 571 54 0 3 92 TMC7,ITPRIPL2
SE_02_117300659 chr16:18985729-19016684 Sample_02_1173 Brain GBM01 659 24 921 79 2 13 114 TMC7
SE_02_105000403 chr16:18985778-19019946 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 403 13 992 90 3 13 122 TMC7,LOC102723385,COQ7
SE_02_132200517 chr16:18985852-19008735 Sample_02_1322 Connective Tissue HT1080_WT 517 8 690 63 1 12 0 TMC7
SE_02_136200655 chr16:18985939-19011409 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 655 11 767 70 2 12 58 TMC7
SE_02_132000576 chr16:18985955-19011281 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 576 9 764 70 2 12 58 TMC7
SE_02_136100636 chr16:18985960-19010605 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 636 11 742 68 1 12 58 TMC7
SE_02_070500122 chr16:18985971-19011887 Sample_02_0705 Pancreas AsPC1 WT 122 8 774 71 2 12 58 TMC7
SE_02_127600349 chr16:18985978-19019808 Sample_02_1276 Prostate PC3_GSK126 349 18 984 90 3 13 122 TMC7,LOC102723385,COQ7
SE_02_127500372 chr16:18986004-19020785 Sample_02_1275 Prostate PC3_Vorinostat 372 27 1008 91 3 13 122 TMC7,LOC102723385,COQ7
SE_02_074100939 chr16:18986022-19011276 Sample_02_0741 Muscle RH30 939 7 760 70 2 12 58 TMC7
SE_02_119800719 chr16:18986022-19014783 Sample_02_1198 Brain GBM34 719 16 856 73 2 12 58 TMC7
SE_02_151200643 chr16:18986069-19001881 Sample_02_1512 Lung Purified AT2 cells 643 6 509 49 0 3 0 TMC7,ITPRIPL2
SE_02_126800722 chr16:18986103-19008635 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 722 7 680 63 1 12 0 TMC7
SE_02_102400208 chr16:18986193-19019851 Sample_02_1024 Prostate PC3 cells 208 11 977 90 3 13 122 TMC7,LOC102723385,COQ7
SE_02_064700378 chr16:18986357-19009797 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 378 9 709 63 1 12 58 TMC7
SE_02_070900195 chr16:18986385-19014560 Sample_02_0709 Pancreas hT85_organoid 195 14 839 72 2 12 58 TMC7
SE_02_082601225 chr16:18986399-19007619 Sample_02_0826 Stomach gastric tumor 1225 16 656 60 1 10 0 TMC7
SE_02_097600413 chr16:18986533-19008421 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 413 7 666 62 1 12 0 TMC7
SE_02_075700760 chr16:18987893-19008704 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 760 4 617 59 1 12 0 TMC7
SE_02_125300823 chr16:18988088-19015352 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 823 7 804 71 2 12 58 TMC7
SE_02_105400355 chr16:18988188-19008701 Sample_02_1054 Esophagus SKGT4 355 12 612 58 1 12 0 TMC7
SE_02_065200448 chr16:18988306-19009509 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 448 10 638 59 1 12 50 TMC7
SE_02_072400129 chr16:18988343-19011329 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 129 10 687 65 2 12 58 TMC7
SE_02_066000515 chr16:18988409-19009817 Sample_02_0660 Mammary gland MCF10DCIS 515 4 644 60 1 12 58 TMC7
SE_02_137100767 chr16:18988503-19008343 Sample_02_1371 Pancreas Patu899S-untreated 767 9 600 58 1 12 0 TMC7
SE_02_047600809 chr16:18988507-19008711 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 809 12 605 58 1 12 0 TMC7
SE_02_064801027 chr16:18988519-19009495 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1027 10 633 59 1 12 50 TMC7
SE_02_072000365 chr16:18988575-19008092 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 365 12 591 58 1 11 0 TMC7
SE_02_044300456 chr16:18988590-19020797 Sample_02_0443 Bone MG63 456 17 925 86 3 13 122 TMC7,LOC102723385,COQ7
SE_02_071200941 chr16:18988614-19008688 Sample_02_0712 Pancreas BxPC3_sgNEG 941 8 602 58 1 12 0 TMC7
SE_02_066100860 chr16:18988678-19009392 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 860 14 622 59 1 12 40 TMC7
SE_02_072100599 chr16:18988693-19008390 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 599 11 596 58 1 12 0 TMC7
SE_02_071900654 chr16:18988740-19006707 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 654 11 556 55 1 10 0 TMC7
SE_02_044200550 chr16:18988771-19019947 Sample_02_0442 Bone MG63.3 550 17 897 85 3 13 122 TMC7,LOC102723385,COQ7
SE_02_095100320 chr16:18989109-19007810 Sample_02_0951 HMSCs hMSCs 320 11 574 56 1 11 0 TMC7
SE_02_020500371 chr16:18989118-19006882 Sample_02_0205 Stomach Gastric_Primary_Sample_T 371 5 551 54 1 10 0 TMC7
SE_02_071400192 chr16:18989158-19007417 Sample_02_0714 Pancreas SUIT2_MTV 192 6 559 54 1 10 0 TMC7
SE_02_136600753 chr16:18989311-19008557 Sample_02_1366 Pancreas BxPC3-untreated 753 13 578 55 1 12 0 TMC7
SE_02_070700474 chr16:18989442-19008483 Sample_02_0707 Pancreas BxPC3 WT 474 9 577 55 1 12 0 TMC7
SE_02_071500305 chr16:18989457-19008066 Sample_02_0715 Pancreas SUIT2_TP63dN 305 8 568 55 1 11 0 TMC7
SE_02_071600255 chr16:18989461-19008101 Sample_02_0716 Pancreas SUIT2_GFP 255 9 568 55 1 11 0 TMC7
SE_02_070600165 chr16:18989465-19008029 Sample_02_0706 Pancreas SUIT2 WT 165 15 567 55 1 11 0 TMC7
SE_02_071700463 chr16:18989609-19011332 Sample_02_0717 Pancreas HPAFII_GFP_DOX 463 10 649 60 2 11 58 TMC7
SE_02_035400697 chr16:18993413-19008684 Sample_02_0354 Colon Colo205 697 5 449 47 1 11 0 TMC7
SE_02_024200245 chr16:18993984-19009592 Sample_02_0242 Colon V481 245 2 464 48 1 11 56 TMC7
SE_02_121300835 chr16:18994154-19030383 Sample_02_1213 Brain GBM31 835 11 1035 101 3 22 247 TMC7,LOC102723385,COQ7
SE_02_100900342 chr16:18994285-19014749 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 342 7 596 57 2 11 58 TMC7
SE_02_070400118 chr16:18994422-19011290 Sample_02_0704 Pancreas HPAFII WT 118 9 495 54 2 11 58 TMC7
SE_02_125400383 chr16:18994592-19008644 Sample_02_1254 Bladder Bladder tumor Basal1 383 5 415 47 1 11 0 TMC7
SE_02_019500140 chr16:18995066-19007783 Sample_02_0195 Stomach OCUM1 140 2 384 44 1 10 0 TMC7
SE_02_019900073 chr16:18995072-19007777 Sample_02_0199 Stomach KATO3 73 4 384 44 1 10 0 TMC7
SE_02_137000234 chr16:18995216-19008503 Sample_02_1370 Pancreas Patu8902-untreated 234 9 394 45 1 11 0 TMC7
SE_02_120301068 chr16:18995313-19014891 Sample_02_1203 Brain NB1 1068 9 572 57 2 11 58 TMC7
SE_02_024100278 chr16:18995504-19008924 Sample_02_0241 Colon V456 278 5 387 43 1 11 0 TMC7
SE_02_020400213 chr16:18995653-19007359 Sample_02_0204 Stomach IM95 213 6 343 39 1 9 0 TMC7
SE_01_005800553 chr16:18996786-19020214 Sample_01_0058 Prostate PC-3 553 3 653 69 3 12 122 TMC7,COQ7
SE_02_111500651 chr16:18996998-19006993 Sample_02_1115 Liver HepG2 651 6 304 38 1 9 0 TMC7,ITPRIPL2
SE_02_111300825 chr16:18997103-19006340 Sample_02_1113 Bone U2OS 825 5 281 38 1 9 0 TMC7
SE_02_127700332 chr16:18997271-19019980 Sample_02_1277 Prostate PC3_COMBO 332 14 631 67 3 12 122 TMC7,LOC102723385,COQ7
SE_02_126701126 chr16:18997368-19008762 Sample_02_1267 Bone Im-GCT-4072_G34W 1126 7 331 40 1 11 0 TMC7
SE_02_005600907 chr16:18997693-19009794 Sample_02_0056 Mammary gland HMEC 907 5 348 39 1 11 58 TMC7
SE_02_126301757 chr16:18997820-19008430 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1757 3 306 37 1 11 0 TMC7
SE_01_004501174 chr16:18997882-19009646 Sample_01_0045 Mammary gland mammary-epithelial-cell 1174 5 342 38 1 11 58 TMC7
SE_02_019100132 chr16:18997904-19007520 Sample_02_0191 Stomach SNU719 132 6 286 35 1 9 0 TMC7
SE_02_023600663 chr16:18997912-19007644 Sample_02_0236 Colon V206 663 6 291 35 1 9 0 TMC7
Genomic distribution of SEs associated with TMC7
Genome Browser

The strength of the tissue affected by the gene

Expression of TMC7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)