SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000206573
Gene: THUMPD3-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:9349689-9398579 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_075200647 chr3:9377459-9404898 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 647 6 830 66 2 242 1247 SETD5,THUMPD3-AS1,THUMPD3
SE_02_092300913 chr3:9379303-9405065 Sample_02_0923 Heart fetal heart_PCW10_12522 913 7 789 65 2 242 1204 SETD5,THUMPD3-AS1,THUMPD3
SE_02_111200972 chr3:9379988-9402466 Sample_02_1112 T lymphocyte THP-6 T-ALL 972 7 697 59 1 210 1204 SETD5,THUMPD3-AS1,THUMPD3
SE_02_050300294 chr3:9382711-9400139 Sample_02_0503 Esophagus KYSE140_1 294 5 572 49 1 196 1178 SETD5,THUMPD3-AS1,THUMPD3
SE_02_051500296 chr3:9382711-9400139 Sample_02_0515 Esophagus KYSE140 296 5 572 49 1 196 1178 SETD5,THUMPD3-AS1,THUMPD3
SE_02_046600936 chr3:9382758-9402735 Sample_02_0466 Adipose visceral adipocytes 936 15 626 51 1 211 1178 SETD5,THUMPD3-AS1,THUMPD3
SE_02_111100899 chr3:9383119-9402583 Sample_02_1111 Other HGrC1_SMAD2/3KO 899 11 616 50 1 209 1169 SETD5,THUMPD3-AS1,THUMPD3
SE_02_048000811 chr3:9383456-9406363 Sample_02_0480 Gingival epithelial HGEP 811 12 706 52 1 237 1141 SETD5,THUMPD3-AS1,THUMPD3
SE_02_085701005 chr3:9383515-9405144 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1005 5 679 52 1 232 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_138300587 chr3:9383665-9399737 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 587 5 536 46 1 176 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_129900357 chr3:9383686-9403277 Sample_02_1299 Liver liver 357 9 619 50 1 223 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_143200777 chr3:9383693-9403114 Sample_02_1432 Bone A673 STAG2 WT 777 3 616 49 1 220 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_142700426 chr3:9383720-9401001 Sample_02_1427 Shoulder fibroblast_343 426 3 563 49 1 194 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_127901532 chr3:9383785-9402895 Sample_02_1279 Bone Mesenchymal stem cells 1532 5 605 49 1 203 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_046500916 chr3:9383796-9402983 Sample_02_0465 Adipose subcutaneous adipocytes 916 11 608 49 1 210 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_095300397 chr3:9383810-9403397 Sample_02_0953 Brain H3.3K27M_1840 397 4 613 49 1 224 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_138200612 chr3:9383811-9400336 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 612 10 544 47 1 192 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_064900293 chr3:9383832-9405206 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 293 5 669 51 1 232 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_01_009500207 chr3:9383939-9405213 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 207 9 668 51 1 232 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_076000392 chr3:9383941-9403053 Sample_02_0760 Ovary BIN-67_SMARCA4 392 5 606 49 1 217 1138 SETD5,THUMPD3-AS1,THUMPD3
SE_02_064800632 chr3:9384235-9405365 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 632 10 656 49 0 232 1126 SETD5,THUMPD3-AS1,THUMPD3
SE_02_075700305 chr3:9384236-9406417 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 305 3 678 49 0 236 1126 SETD5,THUMPD3-AS1,THUMPD3
SE_02_137400634 chr3:9384258-9403104 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 634 7 591 47 0 218 1121 SETD5,THUMPD3-AS1,THUMPD3
SE_02_065900568 chr3:9384311-9403094 Sample_02_0659 Lung H23 568 3 589 46 0 216 1116 SETD5,THUMPD3-AS1,THUMPD3
SE_02_047401352 chr3:9384332-9402944 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1352 4 583 46 0 200 1114 SETD5,THUMPD3-AS1,THUMPD3
SE_02_074500140 chr3:9384785-9403457 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 140 3 566 45 0 214 1077 SETD5,THUMPD3-AS1,THUMPD3
SE_02_145500264 chr3:9384794-9402739 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 264 6 549 45 0 193 1075 SETD5,THUMPD3-AS1,THUMPD3
SE_00_005300559 chr3:9384878-9402484 Sample_00_0053 Embryo trophoblast cell originated from H1 559 5 539 45 0 191 1069 SETD5,THUMPD3-AS1,THUMPD3
SE_02_076600597 chr3:9386064-9402719 Sample_02_0766 Ovary PEO1 597 9 503 43 0 193 966 SETD5,THUMPD3-AS1,THUMPD3
SE_02_157000896 chr3:9386492-9403543 Sample_02_1570 iPSCs EiPSC 896 4 515 44 0 213 907 SETD5,THUMPD3-AS1,THUMPD3
SE_02_141300404 chr3:9386558-9405043 Sample_02_1413 Muscle RH4_sgBRG1 404 5 562 45 0 221 905 SETD5,THUMPD3-AS1,THUMPD3
SE_02_092201055 chr3:9386720-9405130 Sample_02_0922 Heart fetal heart_PCW10_12434 1055 5 555 43 0 221 885 SETD5,THUMPD3-AS1,THUMPD3
SE_02_086500522 chr3:9386912-9402624 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 522 4 480 41 0 190 869 SETD5,THUMPD3-AS1,THUMPD3
SE_02_112100953 chr3:9386925-9400564 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 953 4 432 40 0 181 867 SETD5,THUMPD3-AS1,THUMPD3
SE_02_064700797 chr3:9387665-9400027 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 797 4 397 36 0 174 859 SETD5,THUMPD3-AS1,THUMPD3
SE_02_084200191 chr3:9389901-9400143 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 191 3 329 30 0 177 760 SETD5,THUMPD3-AS1,THUMPD3
SE_02_082000447 chr3:9390153-9403595 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 447 8 397 31 0 213 749 SETD5,THUMPD3-AS1,THUMPD3
SE_02_087500887 chr3:9390198-9402679 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 887 1 376 30 0 188 746 SETD5,THUMPD3-AS1,THUMPD3
SE_02_149201002 chr3:9390211-9400572 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1002 1 327 29 0 177 745 SETD5,THUMPD3-AS1,THUMPD3
SE_02_109500698 chr3:9390563-9399669 Sample_02_1095 Blood CD34 Erythroid cells_Don002 698 3 296 25 0 156 721 SETD5,THUMPD3-AS1,THUMPD3
SE_02_138100684 chr3:9391365-9400194 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 684 6 279 24 0 172 710 SETD5,THUMPD3-AS1,THUMPD3
SE_02_058000935 chr3:9391970-9401693 Sample_02_0580 Blood HEL_sgSIK3e4 935 4 301 26 0 178 670 SETD5,THUMPD3-AS1,THUMPD3
SE_02_123000369 chr3:9392471-9402421 Sample_02_1230 Lung PC9 369 6 302 25 0 181 667 SETD5,THUMPD3-AS1,THUMPD3
SE_02_062500403 chr3:9394634-9400489 Sample_02_0625 Mammary gland WS8_4OHT 403 1 198 15 0 171 615 SETD5,THUMPD3-AS1,THUMPD3
SE_02_064000387 chr3:9394636-9400133 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 387 3 195 15 0 167 615 SETD5,THUMPD3-AS1,THUMPD3
SE_02_108600671 chr3:9394757-9400268 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 671 1 192 15 0 171 603 SETD5,THUMPD3-AS1,THUMPD3
SE_02_113600974 chr3:9394854-9400285 Sample_02_1136 Bone U2OS-anaphase/telophase 974 1 191 14 0 171 593 SETD5,THUMPD3-AS1,THUMPD3
SE_02_142600375 chr3:9395000-9399946 Sample_02_1426 Shoulder fibroblast_341 375 2 177 12 0 162 579 SETD5,THUMPD3-AS1,THUMPD3
SE_02_125400685 chr3:9395181-9399118 Sample_02_1254 Bladder Bladder tumor Basal1 685 1 146 9 0 142 558 SETD5,THUMPD3-AS1,THUMPD3
SE_01_011700357 chr3:9395273-9399789 Sample_01_0117 Lung fibroblast of lung 357 2 161 11 0 156 545 SETD5,THUMPD3-AS1,THUMPD3
SE_02_050900351 chr3:9395296-9399710 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 351 2 159 11 0 155 544 SETD5,THUMPD3-AS1,THUMPD3
SE_02_051100426 chr3:9395324-9399658 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 426 1 157 10 0 154 541 SETD5,THUMPD3-AS1,THUMPD3
SE_02_140500205 chr3:9395374-9399738 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 205 1 156 10 0 155 538 SETD5,THUMPD3-AS1,THUMPD3
SE_02_130900687 chr3:9395389-9399752 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 687 1 156 10 0 155 538 SETD5,THUMPD3-AS1,THUMPD3
SE_02_126100609 chr3:9395398-9399230 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 609 1 142 8 0 151 537 SETD5,THUMPD3-AS1,THUMPD3
SE_02_068500375 chr3:9395399-9399674 Sample_02_0685 Lung NCI-H1048_no infection 375 1 153 10 0 154 537 SETD5,THUMPD3-AS1,THUMPD3
SE_02_065200752 chr3:9395415-9399751 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 752 2 156 10 0 155 536 SETD5,THUMPD3-AS1,THUMPD3
SE_02_051000358 chr3:9395436-9399709 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 358 2 153 10 0 155 535 SETD5,THUMPD3-AS1,THUMPD3
SE_02_059100561 chr3:9395442-9399134 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 561 1 138 8 0 142 535 SETD5,THUMPD3-AS1,THUMPD3
SE_02_059300459 chr3:9395452-9399078 Sample_02_0593 Fetal spleenocytes fetal naive T cells 459 1 136 8 0 142 534 SETD5,THUMPD3-AS1,THUMPD3
SE_02_142500297 chr3:9395493-9399685 Sample_02_1425 Shoulder fibroblast_384 297 1 151 10 0 154 531 SETD5,THUMPD3-AS1,THUMPD3
Genomic distribution of SEs associated with THUMPD3-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of THUMPD3-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)