SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000218336
Gene: TENM3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:182143987-182803024 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_154800017 chr4:182171154-182264234 Sample_02_1548 Gastrointestinal Stromal GIST-226 17 32 2600 40 21 605 0 TENM3,MIR1305,LOC90768
SE_02_059400331 chr4:182172493-182311484 Sample_02_0594 iPSC-derived neural progenitors 331 35 4017 46 36 849 0 TENM3,MIR1305,LOC90768,MGC45800,ODZ3
SE_02_138700132 chr4:182175450-182249944 Sample_02_1387 Peripheral blood Mac-1_ALK- 132 21 2102 33 20 530 0 TENM3,MIR1305,LOC90768
SE_02_139200104 chr4:182175703-182251357 Sample_02_1392 Peripheral blood Mac-2A_ALK- 104 17 2139 33 20 531 0 TENM3,MIR1305,LOC90768
SE_02_077001154 chr4:182181068-182241518 Sample_02_0770 Ovary OVCA429_shLuc 1154 19 1691 31 14 477 0 MIR1305,TENM3,LOC90768
SE_02_141900206 chr4:182189158-182246279 Sample_02_1419 Brain hNSC 206 10 1651 30 16 434 0 TENM3,MIR1305,LOC90768
SE_02_143400024 chr4:182197124-182265873 Sample_02_1434 Trophoblast trophoblast stem cells 24 10 1960 34 17 391 0 TENM3,MIR1305
SE_02_143500020 chr4:182197384-182247582 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 20 8 1446 30 15 343 0 TENM3,MIR1305
SE_02_092900079 chr4:182197811-182270225 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 79 36 2054 34 17 377 0 TENM3,MIR1305
SE_00_005300291 chr4:182203522-182246499 Sample_00_0053 Embryo trophoblast cell originated from H1 291 22 1236 30 14 301 0 TENM3,MIR1305
SE_02_045200731 chr4:182203681-182253268 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 731 14 1426 30 15 323 0 TENM3,MIR1305
SE_02_093000719 chr4:182203701-182250365 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 719 39 1360 30 15 306 0 TENM3,MIR1305
SE_02_076300991 chr4:182206194-182252150 Sample_02_0763 Podocyte podocyte_DEX 991 7 1339 30 15 295 0 TENM3,MIR1305
SE_02_061000578 chr4:182206244-182243888 Sample_02_0610 Liposarcoma MLS 1765-92 578 9 1103 30 10 267 0 TENM3,MIR1305
SE_02_076201405 chr4:182206297-182252122 Sample_02_0762 Podocyte podocyte_CTL 1405 9 1337 30 15 295 0 TENM3,MIR1305
SE_02_135400174 chr4:182207008-182262667 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 174 12 1573 33 15 333 0 TENM3,MIR1305
SE_02_150100996 chr4:182229521-182247056 Sample_02_1501 Brain SHEP-21N_NOSPIKE 996 6 548 8 5 110 0 TENM3
SE_01_011501269 chr4:182230149-182241536 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1269 5 344 4 0 63 0 TENM3
SE_02_061900680 chr4:182230691-182247645 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 680 5 525 4 5 82 0 TENM3
SE_02_135200123 chr4:182230896-182261983 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 123 5 894 7 6 122 0 TENM3
SE_02_111101124 chr4:182230914-182247212 Sample_02_1111 Other HGrC1_SMAD2/3KO 1124 6 512 4 5 76 0 TENM3
SE_02_135300442 chr4:182230966-182262540 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 442 7 899 7 6 124 0 TENM3
SE_02_135100262 chr4:182234739-182262452 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 262 5 795 7 6 106 0 TENM3
SE_02_152700541 chr4:182238098-182246984 Sample_02_1527 Embryo naive embryonic stem cell 541 6 285 4 5 49 0 TENM3
SE_02_101500940 chr4:182238161-182279170 Sample_02_1015 Embryo H9_ Undifferentiated 940 19 1196 12 11 170 0 TENM3
SE_02_056000857 chr4:182238167-182257725 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 857 4 568 6 6 94 0 TENM3
SE_02_074500840 chr4:182238442-182247526 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 840 4 295 4 5 49 0 TENM3
SE_02_099100869 chr4:182238631-182263123 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 869 8 712 7 6 97 0 TENM3
SE_02_099000676 chr4:182238907-182253430 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 676 5 449 4 6 69 0 TENM3
SE_02_074400741 chr4:182239972-182247206 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 741 3 245 4 5 41 0 TENM3
SE_02_077502104 chr4:182436647-182469781 Sample_02_0775 Pancreas EndoC-BH1_SE 2104 7 836 3 1 182 0 TENM3
SE_02_082500115 chr4:182443434-182620475 Sample_02_0825 Stomach SNU484 115 68 4969 145 8 767 126 TENM3
SE_02_068300015 chr4:182447666-182602030 Sample_02_0683 Lung DMS114 15 77 4306 144 6 641 126 TENM3
SE_02_077600032 chr4:182447725-182574825 Sample_02_0776 Pancreas EndoC-BH1 32 34 3527 112 5 535 62 TENM3
SE_02_127100092 chr4:182479206-182618031 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 92 67 3953 142 7 568 126 TENM3,DCTD
SE_02_118500614 chr4:182479604-182537997 Sample_02_1185 Brain GBM14 614 23 1670 67 4 230 0 TENM3,DCTD
SE_02_127200752 chr4:182494505-182529906 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 752 8 1022 47 1 140 0 TENM3
SE_02_101500366 chr4:182525872-182594535 Sample_02_1015 Embryo H9_ Undifferentiated 366 18 1947 86 2 235 62 TENM3
SE_02_154800385 chr4:182529523-182580097 Sample_02_1548 Gastrointestinal Stromal GIST-226 385 19 1406 59 1 175 62 TENM3
SE_02_157000522 chr4:182529744-182572885 Sample_02_1570 iPSCs EiPSC 522 8 1189 50 1 152 62 TENM3
SE_02_157201071 chr4:182529935-182561156 Sample_02_1572 iPSCs FiPSC 1071 5 869 46 1 114 62 TENM3
SE_02_101700401 chr4:182531302-182624384 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 401 17 2668 88 6 366 126 TENM3
SE_02_101600272 chr4:182531569-182597038 Sample_02_1016 Embryo H9_Mesendoderm_24h 272 14 1826 84 2 228 62 TENM3
SE_02_086100313 chr4:182537304-182561732 Sample_02_0861 iPSCs SAH_WT 313 8 690 36 1 89 62 TENM3
SE_02_083800468 chr4:182549213-182561178 Sample_02_0838 Embryo hNPCs_WT 468 6 329 16 1 77 0 TENM3,DCTD
SE_02_086000535 chr4:182553859-182561640 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 535 4 215 11 1 58 0 TENM3
SE_02_156700960 chr4:182554349-182561547 Sample_02_1567 iPSCs CiPSC 960 5 198 10 1 58 0 TENM3
Genomic distribution of SEs associated with TENM3
Genome Browser

The strength of the tissue affected by the gene

Expression of TENM3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)