SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000157303
Gene: SUSD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:93058688-93085133 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000700014 chr9:92946528-93099866 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 14 19 4385 411 13 217 3377 FGD3,SUSD3,C9ORF89,NINJ1
SE_02_012800126 chr9:93003352-93109231 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 126 29 3111 309 14 164 2664 FGD3,SUSD3,C9ORF89,NINJ1
SE_02_121800186 chr9:93012316-93073101 Sample_02_1218 Bone marrow Daudi 186 22 1812 158 6 77 1452 FGD3,LOC101927954,SUSD3,C9ORF89
SE_02_002600508 chr9:93019915-93043988 Sample_02_0026 Blood CD4donorE 508 8 741 74 2 35 860 FGD3,SUSD3
SE_02_152900435 chr9:93021203-93066889 Sample_02_1529 Peripheral blood neutrophils_0BC75 435 17 1387 116 3 51 877 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_050100311 chr9:93021274-93066447 Sample_02_0501 Blood HL-60_CTRL 311 15 1372 114 3 51 877 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_010400408 chr9:93023960-93065801 Sample_02_0104 Blood neutrophils 408 10 1257 102 3 51 769 FGD3,SUSD3,C9ORF89
SE_02_153100451 chr9:93024015-93065608 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 451 11 1249 102 3 51 769 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_034200690 chr9:93024099-93066370 Sample_02_0342 Liver HSPCs_F0 690 11 1268 102 3 51 769 FGD3,SUSD3,C9ORF89
SE_02_146000667 chr9:93025091-93066143 Sample_02_1460 Blood Mutz-3 667 8 1237 95 3 50 769 FGD3,SUSD3,LOC101927954,C9ORF89
SE_00_005500785 chr9:93025130-93065751 Sample_00_0055 Spleen spleen 34y 785 18 1221 95 3 50 769 FGD3,SUSD3,LOC101927954,C9ORF89,C9orf89
SE_02_131400139 chr9:93025222-93067223 Sample_02_1314 Brain hMGLs_TREM2-KO 139 13 1264 99 3 50 769 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_108300682 chr9:93026647-93062998 Sample_02_1083 Macula macula 682 9 1080 73 2 44 769 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_083600988 chr9:93026915-93083553 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 988 13 1721 153 6 70 1183 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_131200135 chr9:93031615-93066229 Sample_02_1312 Brain hMGLs_WT 135 12 1061 77 2 44 696 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_131500187 chr9:93031620-93066926 Sample_02_1315 Brain hMGLs_INPP5D SNP 187 14 1085 79 2 44 696 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_131800176 chr9:93031642-93066302 Sample_02_1318 Brain hMGLs_SORL1-A528T 176 9 1062 77 2 44 696 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_131600163 chr9:93031643-93066674 Sample_02_1316 Brain hMGLs_TREM2-R47H 163 13 1073 77 2 44 696 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_131300205 chr9:93032706-93066346 Sample_02_1313 Brain hMGLs_CD33_SNP 205 13 1033 73 2 44 665 FGD3,SUSD3,LOC101927954,C9ORF89
SE_02_104900808 chr9:93033579-93042378 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 808 1 285 21 0 18 421 FGD3,LOC101927954,SUSD3
SE_02_075100470 chr9:93042923-93065760 Sample_02_0751 Lymphoma Rec-1_WO 470 4 688 49 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_155300288 chr9:93049297-93099484 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 288 17 1470 154 7 85 929 C9ORF89,SUSD3,LOC101927954,NINJ1
SE_02_156500389 chr9:93050195-93072372 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 389 6 644 55 3 22 215 SUSD3,LOC101927954,C9ORF89
SE_00_002900400 chr9:93050887-93073203 Sample_00_0029 Ovary ovary 400 9 650 58 3 22 215 SUSD3,C9ORF89
SE_01_009100319 chr9:93051247-93099775 Sample_01_0091 Uterus uterus 319 7 1420 153 7 85 929 SUSD3,C9ORF89,NINJ1
SE_01_009200404 chr9:93051558-93100526 Sample_01_0092 Vagina vagina 404 6 1429 154 7 85 929 SUSD3,C9ORF89,NINJ1
SE_02_022600482 chr9:93052382-93099365 Sample_02_0226 Blood KOPTK1 482 5 1374 151 7 85 929 SUSD3,C9ORF89,NINJ1
SE_02_017600851 chr9:93052399-93100878 Sample_02_0176 Peripheral blood LOUCY 851 7 1413 153 7 85 929 SUSD3,C9ORF89,NINJ1
SE_02_025600803 chr9:93055465-93067641 Sample_02_0256 Peripheral blood MV411 803 2 369 37 2 22 170 SUSD3,C9ORF89
SE_02_075000750 chr9:93055471-93065868 Sample_02_0750 Lymphoma Rec-1_GSI 750 3 320 33 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_131700557 chr9:93055488-93066821 Sample_02_1317 Brain hMGLs_SORL1-KO 557 7 348 34 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_078201081 chr9:93055902-93065247 Sample_02_0782 Blood MEC1 1081 3 286 29 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_104400286 chr9:93056158-93066023 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 286 8 306 32 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_104900351 chr9:93056534-93067056 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 351 1 334 32 2 22 170 SUSD3,LOC101927954,C9ORF89
SE_02_078300948 chr9:93057172-93065626 Sample_02_0783 Blood MEC2 948 2 272 29 2 21 170 SUSD3,LOC101927954,C9ORF89
SE_02_021300723 chr9:93057197-93073435 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 723 4 495 52 3 21 215 SUSD3,C9ORF89
SE_02_109800857 chr9:93058096-93067079 Sample_02_1098 Blood THP1_DMSO_noPMA 857 3 286 30 2 21 170 SUSD3,LOC101927954,C9ORF89
SE_02_002600424 chr9:93058221-93084223 Sample_02_0026 Blood CD4donorE 424 3 809 89 6 46 584 SUSD3,C9ORF89
SE_02_059300496 chr9:93058420-93065835 Sample_02_0593 Fetal spleenocytes fetal naive T cells 496 2 243 25 2 21 170 SUSD3,LOC101927954,C9ORF89
SE_02_046100635 chr9:93058685-93067794 Sample_02_0461 Blood MV-4-11-B cells 635 3 288 29 2 20 100 SUSD3,LOC101927954,C9ORF89
SE_02_104301636 chr9:93059277-93063955 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1636 1 147 13 2 12 0 SUSD3,LOC101927954,C9ORF89
SE_02_104700842 chr9:93060873-93064560 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 842 1 141 16 2 13 0 SUSD3,LOC101927954,C9ORF89
SE_02_104801867 chr9:93060936-93064446 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1867 1 136 16 2 11 0 SUSD3,LOC101927954,C9ORF89
Genomic distribution of SEs associated with SUSD3
Genome Browser

The strength of the tissue affected by the gene

Expression of SUSD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)