SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000173898
Gene: SPTBN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:66682497-66729226 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103200087 chr11:66680421-66768055 Sample_02_1032 Head and neck SCC1 JQ1 87 28 2173 88 2 477 4080 C11ORF80,SPTBN2,RBM4,RBM4B
SE_02_104601884 chr11:66680783-66719693 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1884 10 1093 40 0 297 3568 SPTBN2,RBM4,RBM4B,C11ORF80
SE_02_098901017 chr11:66682704-66729948 Sample_02_0989 Kidney kidney cortex_WT 1017 17 1287 49 2 395 3814 SPTBN2,RBM4,RBM4B,C11ORF80,PC,C11orf80
SE_02_039600511 chr11:66684311-66729239 Sample_02_0396 Skin NHEK-D 511 10 1225 41 2 386 3814 SPTBN2,C11ORF80,RBM4,RBM4B
SE_02_021600162 chr11:66685048-66739135 Sample_02_0216 Skin NHEK_scramble 162 13 1422 49 2 411 3814 SPTBN2,C11ORF80,RBM4,RBM4B
SE_02_085300227 chr11:66687295-66729433 Sample_02_0853 Mammary gland MCF7L-TamR 227 7 1131 38 2 352 3411 SPTBN2,RBM4,RBM4B,C11ORF80
SE_02_103500315 chr11:66690116-66774005 Sample_02_1035 Mammary gland HCC70_Vehicle 315 28 2000 71 2 409 3148 C11ORF80,SPTBN2,RBM4B
SE_02_107100348 chr11:66700418-66728826 Sample_02_1071 Blood Jurkat_WT 348 5 753 26 2 222 1769 SPTBN2,RBM4B,C11ORF80
SE_02_087400614 chr11:66700521-66728700 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 614 4 746 26 2 221 1719 SPTBN2,RBM4B,C11ORF80
SE_02_077500574 chr11:66702632-66753857 Sample_02_0775 Pancreas EndoC-BH1_SE 574 15 1233 47 2 281 1669 C11ORF80,SPTBN2,RBM4B,C11orf80
SE_02_093500246 chr11:66707306-66729096 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 246 8 578 21 2 175 1132 SPTBN2,RBM4B,C11ORF80
SE_02_071300855 chr11:66708524-66729079 Sample_02_0713 Pancreas BxPC3_sgTP63 855 7 542 21 2 159 881 SPTBN2,RBM4B,C11ORF80
SE_02_136600285 chr11:66708810-66729023 Sample_02_1366 Pancreas BxPC3-untreated 285 8 537 21 2 159 863 SPTBN2,RBM4B,C11ORF80
SE_02_070700755 chr11:66709049-66728890 Sample_02_0707 Pancreas BxPC3 WT 755 10 534 21 2 155 784 SPTBN2,RBM4B,C11ORF80
SE_02_071201235 chr11:66709336-66729010 Sample_02_0712 Pancreas BxPC3_sgNEG 1235 6 525 20 2 155 794 SPTBN2,RBM4B,C11ORF80
SE_02_094800506 chr11:66709952-66728685 Sample_02_0948 Pharyng Detroit562 506 3 501 19 2 154 725 SPTBN2,RBM4B,C11ORF80,RBM14,RBM4,DPP3,C11orf80
SE_02_093700223 chr11:66713960-66729265 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 223 4 411 15 2 134 551 SPTBN2,RBM4B,C11ORF80
SE_02_146400428 chr11:66715486-66730559 Sample_02_1464 Ovary CAOV4 428 6 398 16 2 135 363 SPTBN2,RBM4B,C11ORF80
SE_02_123900164 chr11:66715728-66732500 Sample_02_1239 Skin Waga_virus_positive 164 7 433 17 2 142 336 SPTBN2,RBM4B,C11ORF80
SE_02_136500807 chr11:66716575-66728985 Sample_02_1365 Pancreas AsPC1-untreated 807 3 320 11 2 109 244 SPTBN2,RBM4B,C11ORF80
SE_02_009600330 chr11:66716619-66729312 Sample_02_0096 Mammary gland ZR-75-1_1 330 3 323 11 2 120 246 SPTBN2,C11ORF80,RBM4B
SE_02_108300598 chr11:66716789-66748148 Sample_02_1083 Macula macula 598 7 731 27 2 183 398 C11ORF80,SPTBN2,RBM4B
SE_02_123400468 chr11:66716790-66728756 Sample_02_1234 Mammary gland T47D_Full 468 4 309 11 2 109 195 SPTBN2,RBM4B,C11ORF80
SE_02_108600831 chr11:66716794-66728828 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 831 2 310 11 2 109 208 SPTBN2,RBM4B,C11ORF80
SE_02_076600913 chr11:66716818-66729020 Sample_02_0766 Ovary PEO1 913 5 312 11 2 109 245 SPTBN2,RBM4B,C11ORF80
SE_02_109200673 chr11:66716903-66728982 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 673 5 310 11 2 109 243 SPTBN2,RBM4B,C11ORF80
SE_02_040400532 chr11:66717273-66728222 Sample_02_0404 Mammary gland ZR-75-1_2 532 1 293 11 2 73 135 SPTBN2,C11ORF80,RBM4B
SE_02_085200555 chr11:66717355-66729002 Sample_02_0852 Mammary gland MCF7L-P 555 5 297 11 2 108 244 SPTBN2,RBM4B,C11ORF80
SE_02_115900555 chr11:66717355-66729002 Sample_02_1159 Mammary gland MCF7 555 5 297 11 2 108 244 SPTBN2,RBM4B,C11ORF80
SE_02_077700231 chr11:66717372-66728709 Sample_02_0777 Mammary gland MCF7_TAMR 231 4 292 11 2 107 184 SPTBN2,RBM4B,C11ORF80
SE_02_056700279 chr11:66717409-66728765 Sample_02_0567 Mammary gland MCF7L-P_TAMR 279 5 292 11 2 107 197 SPTBN2,RBM4B,C11ORF80
SE_02_108200640 chr11:66717481-66747901 Sample_02_1082 Retina retina 640 5 703 27 2 179 398 C11ORF80,SPTBN2,RBM4B,RBM14,RBM4,C11orf80
SE_02_068600334 chr11:66717637-66729205 Sample_02_0686 Lung NCI-H128_no infection 334 7 289 11 2 110 246 SPTBN2,RBM4B,C11ORF80
SE_02_137000410 chr11:66717675-66728966 Sample_02_1370 Pancreas Patu8902-untreated 410 5 286 11 2 105 239 SPTBN2,RBM4B,C11ORF80
SE_02_102700240 chr11:66717876-66728824 Sample_02_1027 Esophagus KYSE180_1 240 3 281 11 2 102 208 SPTBN2,RBM4B,C11ORF80
SE_02_049600250 chr11:66718022-66728775 Sample_02_0496 Mammary gland C49R 250 4 276 11 2 101 199 SPTBN2,RBM4B,C11ORF80
SE_02_123700343 chr11:66718114-66731851 Sample_02_1237 Skin MKL2_virus_positive 343 5 333 14 2 122 246 SPTBN2,RBM4B,C11ORF80
SE_02_147000940 chr11:66718192-66728031 Sample_02_1470 Umbilical Vein H441 940 2 268 11 2 63 135 SPTBN2,RBM4B,C11ORF80
SE_02_128300550 chr11:66718309-66729090 Sample_02_1283 Lung NCI-H2107_p8-15 550 4 272 11 2 102 246 SPTBN2,RBM4B,C11ORF80
SE_02_129200424 chr11:66718475-66729080 Sample_02_1292 Lung JHU-LX110-SCLC PDX 424 4 265 11 2 95 246 SPTBN2,RBM4B,C11ORF80
SE_02_123600279 chr11:66718598-66732458 Sample_02_1236 Skin MKL1_virus_positive 279 6 327 14 2 114 246 SPTBN2,RBM4B,C11ORF80
SE_02_011200882 chr11:66719337-66741554 Sample_02_0112 Connective tissue HT1080_untreated 882 3 517 21 2 143 246 SPTBN2,C11ORF80,RBM4B
SE_02_103600896 chr11:66727355-66728755 Sample_02_1036 Mammary gland HCC70_XY018 896 1 16 0 0 39 60 RBM4B,C11ORF80,SPTBN2
Genomic distribution of SEs associated with SPTBN2
Genome Browser

The strength of the tissue affected by the gene

Expression of SPTBN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)