SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000178996
Gene: SNX18 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:54517759-54546586 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143200736 chr5:54492628-54542181 Sample_02_1432 Bone A673 STAG2 WT 736 9 1382 226 11 114 612 SNX18,HSPB3
SE_02_105800797 chr5:54501272-54525131 Sample_02_1058 Bone A673_SA2 Rescue 797 6 663 114 7 92 612 SNX18,HSPB3
SE_02_105900831 chr5:54502719-54534796 Sample_02_1059 Bone A673_WT 831 9 860 140 11 107 612 SNX18,HSPB3
SE_02_147300833 chr5:54502719-54534796 Sample_02_1473 Bone A-673 833 9 860 140 11 107 612 SNX18,HSPB3
SE_02_148000715 chr5:54502933-54534332 Sample_02_1480 Bone MHH-ES-1 715 7 840 137 11 107 612 SNX18,HSPB3
SE_02_148200427 chr5:54503098-54534856 Sample_02_1482 Bone POE 427 7 850 135 11 107 612 SNX18,HSPB3
SE_02_128000537 chr5:54503113-54534462 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 537 8 834 134 11 107 612 SNX18,HSPB3
SE_02_044600294 chr5:54503171-54548555 Sample_02_0446 Bone osteosarcoma tumor P2 294 10 1174 188 12 153 883 SNX18,HSPB3
SE_02_044700361 chr5:54503191-54534777 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 361 10 844 134 11 107 612 SNX18,HSPB3
SE_02_143301351 chr5:54503196-54536046 Sample_02_1433 Bone A673 STAG2 null 1351 9 877 137 11 108 612 SNX18,HSPB3
SE_02_148300373 chr5:54503213-54532246 Sample_02_1483 Bone RD-ES 373 8 782 124 11 104 612 SNX18,HSPB3
SE_01_009300647 chr5:54503241-54542944 Sample_01_0093 Aorta ascending aorta 647 8 1056 165 11 113 612 SNX18,HSPB3
SE_02_044500927 chr5:54503244-54539386 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 927 13 970 153 11 110 612 SNX18,HSPB3
SE_02_148900076 chr5:54503308-54534731 Sample_02_1489 Bone TC-106 76 10 842 133 11 107 612 SNX18,HSPB3
SE_02_132801285 chr5:54503347-54534144 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1285 7 822 131 11 106 612 SNX18,HSPB3
SE_02_059401151 chr5:54514170-54538465 Sample_02_0594 iPSC-derived neural progenitors 1151 8 632 108 10 107 612 SNX18
SE_01_008700657 chr5:54514195-54549090 Sample_01_0087 Thyroid gland thyroid-gland 657 6 876 147 11 152 883 SNX18
SE_01_006400604 chr5:54514299-54539089 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 604 5 652 109 10 108 612 SNX18
SE_01_007300699 chr5:54514325-54548887 Sample_01_0073 Coronary artery coronary-artery 699 7 871 146 11 152 883 SNX18
SE_02_127901336 chr5:54514343-54525617 Sample_02_1279 Bone Mesenchymal stem cells 1336 3 298 53 6 91 612 SNX18
SE_02_028400117 chr5:54514346-54546420 Sample_02_0284 Pelvis patient 119 117 6 810 132 10 145 867 SNX18
SE_00_001500552 chr5:54514357-54534821 Sample_00_0015 Lung IMR-90 552 3 533 91 10 106 612 SNX18
SE_02_141000574 chr5:54514369-54538780 Sample_02_1410 Brain GSC6 574 7 643 108 10 107 612 SNX18
SE_02_148600353 chr5:54514399-54524549 Sample_02_1486 Bone SK-N-MC 353 4 267 46 5 90 612 SNX18
SE_02_108300677 chr5:54514418-54534554 Sample_02_1083 Macula macula 677 7 523 90 10 106 612 SNX18
SE_02_118600889 chr5:54514421-54538094 Sample_02_1186 Brain GBM15 889 7 621 107 10 107 612 SNX18
SE_02_021101221 chr5:54514448-54546270 Sample_02_0211 Lung MRC-5_NFD_1DPT 1221 6 807 131 10 145 861 SNX18
SE_02_014600260 chr5:54514504-54543219 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 260 9 746 121 10 113 630 SNX18
SE_02_147600275 chr5:54514517-54534691 Sample_02_1476 Bone EW-1 275 9 526 89 10 103 612 SNX18
SE_02_147800471 chr5:54514664-54529423 Sample_02_1478 Bone EW-3 471 3 393 68 9 95 612 SNX18
SE_02_132500637 chr5:54514712-54520873 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 637 3 152 21 3 80 588 SNX18
SE_02_070200305 chr5:54514714-54524425 Sample_02_0702 Bone David_TC71 305 5 257 41 4 85 612 SNX18
SE_02_053300374 chr5:54514775-54583441 Sample_02_0533 Blood vessel Circle of Willis_54y 374 19 1754 251 27 191 883 SNX18
SE_01_008801175 chr5:54515039-54554795 Sample_01_0088 Tibial nerve tibial-nerve 1175 7 1020 156 11 161 883 SNX18
SE_02_118900484 chr5:54515049-54555423 Sample_02_1189 Brain GBM22 484 11 1036 159 12 161 883 SNX18
SE_02_148100839 chr5:54515155-54527618 Sample_02_1481 Bone MIC 839 4 327 55 7 91 612 SNX18
SE_02_106100473 chr5:54515205-54534611 Sample_02_1061 Bone TC71_WT 473 8 510 86 10 101 612 SNX18
SE_02_148800473 chr5:54515205-54534611 Sample_02_1488 Bone TC-71 473 8 510 86 10 101 612 SNX18
SE_02_144500615 chr5:54515245-54549831 Sample_02_1445 Adipose SW872_TAZ4SA 615 9 872 142 11 147 883 SNX18
SE_02_058600424 chr5:54515253-54552943 Sample_02_0586 Chordal patient-derived chordoma MGH_4 424 16 962 149 11 154 883 SNX18
SE_02_084900448 chr5:54515261-54521865 Sample_02_0849 iPSCs iPSC_CBP-30 448 4 173 23 4 81 612 SNX18
SE_02_121900306 chr5:54515322-54542462 Sample_02_1219 Bone marrow H929 306 8 717 115 10 107 612 SNX18
SE_02_090801369 chr5:54515425-54538737 Sample_02_0908 Heart left ventricle_DCM_LV1262 1369 14 619 102 10 102 612 SNX18
SE_01_008600644 chr5:54516716-54548947 Sample_01_0086 Thoracic aorta thoracic-aorta 644 4 818 136 11 142 883 SNX18
SE_01_007000855 chr5:54516739-54539121 Sample_01_0070 Ascending aorta ascending-aorta 855 2 599 99 10 98 612 SNX18
SE_02_156000704 chr5:54517138-54548560 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 704 10 791 136 10 142 883 SNX18
SE_02_032100430 chr5:54517479-54542631 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 430 3 663 111 8 102 612 SNX18
SE_02_090300948 chr5:54517556-54548621 Sample_02_0903 Heart left ventricle_DCM_LV1009 948 9 787 135 9 142 883 SNX18
SE_02_136400309 chr5:54517593-54534602 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 309 5 448 80 8 96 604 SNX18
SE_02_126000806 chr5:54517650-54531631 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 806 4 371 67 8 92 588 SNX18
SE_02_125900513 chr5:54517662-54532966 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 513 6 403 73 8 92 585 SNX18
SE_00_002900547 chr5:54517664-54535748 Sample_00_0029 Ovary ovary 547 11 480 80 8 95 585 SNX18
SE_02_032000659 chr5:54517675-54542768 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 659 3 663 110 8 101 584 SNX18
SE_02_122000271 chr5:54517682-54534829 Sample_02_1220 Bone marrow JJN3 271 7 452 79 8 95 583 SNX18
SE_02_061300670 chr5:54517686-54547967 Sample_02_0613 Liposarcoma MLPS_T1 670 12 764 128 9 134 852 SNX18
SE_02_117400816 chr5:54517687-54537823 Sample_02_1174 Brain GBM02 816 8 534 95 8 96 580 SNX18
SE_01_011000573 chr5:54517690-54542842 Sample_01_0110 Aorta thoracic aorta_37y 573 10 663 110 8 101 580 SNX18
SE_02_112900572 chr5:54517692-54548535 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 572 11 781 133 9 139 851 SNX18
SE_02_153000523 chr5:54517692-54626933 Sample_02_1530 Peripheral blood neutrophils_0BA0X 523 26 2857 345 31 245 851 SNX18
SE_02_123500406 chr5:54517704-54534612 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 406 10 446 78 8 91 578 SNX18
SE_02_061400593 chr5:54517710-54548607 Sample_02_0614 Liposarcoma MLPS_T2 593 12 782 133 9 137 847 SNX18
SE_02_122700121 chr5:54517711-54543390 Sample_02_1227 Bone marrow U266 121 6 670 110 8 110 606 SNX18
SE_02_090500892 chr5:54517723-54548641 Sample_02_0905 Heart left ventricle_DCM_LV1033 892 12 783 133 9 137 839 SNX18
SE_02_090401279 chr5:54517726-54583030 Sample_02_0904 Heart left ventricle_DCM_LV1028 1279 19 1671 241 25 181 836 SNX18
SE_02_091501159 chr5:54517727-54538619 Sample_02_0915 Heart left ventricle_DCM_LV1371 1159 8 558 96 8 92 565 SNX18
SE_02_091301435 chr5:54517729-54548519 Sample_02_0913 Heart left ventricle_DCM_LV1304 1435 13 779 133 9 135 835 SNX18
SE_02_157300946 chr5:54517735-54534563 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 946 2 443 78 8 91 563 SNX18
SE_02_130800723 chr5:54517736-54534976 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 723 4 459 80 8 91 563 SNX18
SE_02_122300097 chr5:54517739-54534833 Sample_02_1223 Bone marrow KMS28BM 97 1 451 78 8 91 563 SNX18
SE_02_092800307 chr5:54517745-54626780 Sample_02_0928 Peripheral blood neutrophils_Ecoli 307 25 2848 342 31 241 833 SNX18
SE_02_107500168 chr5:54517750-54542860 Sample_02_1075 Lymphoma BC-3 168 10 659 109 8 97 560 SNX18
SE_02_091801055 chr5:54517751-54535768 Sample_02_0918 Heart left ventricle_DCM_LV1437 1055 8 477 79 8 91 560 SNX18
SE_01_010200230 chr5:54517756-54542421 Sample_01_0102 Artery tibial artery 230 4 652 108 8 97 559 SNX18
SE_02_152500348 chr5:54517764-54535698 Sample_02_1525 Stomach N87 DMSO 348 6 476 79 8 91 558 SNX18
SE_02_143400746 chr5:54517769-54540895 Sample_02_1434 Trophoblast trophoblast stem cells 746 8 609 107 8 96 558 SNX18
SE_02_094900361 chr5:54517774-54562581 Sample_02_0949 Umbilical artery HUAEC_WT 361 25 1148 181 13 155 828 SNX18
SE_02_098901126 chr5:54517779-54571272 Sample_02_0989 Kidney kidney cortex_WT 1126 14 1353 197 13 165 828 SNX18
SE_02_107400218 chr5:54517786-54542700 Sample_02_1074 Lymphoma BC-1 218 13 658 109 8 97 554 SNX18
SE_02_143500757 chr5:54517791-54540022 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 757 7 593 101 8 96 554 SNX18
SE_00_000400337 chr5:54517888-54534106 Sample_00_0004 Aorta aorta 337 12 423 76 8 90 528 SNX18
SE_02_092901134 chr5:54518368-54539781 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1134 12 570 97 8 85 399 SNX18
SE_02_090701253 chr5:54519020-54558965 Sample_02_0907 Heart left ventricle_DCM_LV1223 1253 21 1008 165 12 115 526 SNX18
SE_02_053400673 chr5:54519118-54542869 Sample_02_0534 Blood vessel Circle of Willis_60y 673 12 622 106 8 49 238 SNX18
SE_02_122100501 chr5:54519373-54535002 Sample_02_1221 Bone marrow KMS11 501 3 414 75 8 31 196 SNX18
SE_02_118100871 chr5:54519837-54555075 Sample_02_1181 Brain GBM10 871 12 902 142 8 82 401 SNX18
SE_01_010500727 chr5:54520031-54554569 Sample_01_0105 Thyroid gland thyroid gland_54y 727 9 882 139 8 80 385 SNX18
SE_01_004200431 chr5:54521604-54535480 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 431 2 372 65 6 20 0 SNX18
SE_02_152400680 chr5:54526225-54541644 Sample_02_1524 Lung H3122 DMSO 680 5 403 68 4 17 0 SNX18
SE_02_092700307 chr5:54539396-54626669 Sample_02_0927 Peripheral blood neutrophils_US 307 17 2272 245 23 147 271 SNX18
SE_01_005200509 chr5:54573889-54627307 Sample_01_0052 Blood neutrophil 509 9 1431 139 16 69 0 SNX18
SE_02_152900814 chr5:54577488-54628979 Sample_02_1529 Peripheral blood neutrophils_0BC75 814 13 1388 135 14 72 0 SNX18
SE_02_010400577 chr5:54581202-54626872 Sample_02_0104 Blood neutrophils 577 9 1231 107 8 68 0 SNX18
SE_01_008600135 chr5:54600906-54721724 Sample_01_0086 Thoracic aorta thoracic-aorta 135 13 3464 237 14 222 0 SNX18
SE_01_007000135 chr5:54601490-54721433 Sample_01_0070 Ascending aorta ascending-aorta 135 18 3437 237 14 221 0 SNX18
SE_02_020900853 chr5:54610450-54681911 Sample_02_0209 Lung MRC-5_MRC5_1DPT 853 13 2085 156 5 147 0 SNX18
SE_02_026100410 chr5:54614878-54703791 Sample_02_0261 Osteoblastic hFOB_differentiated 410 12 2589 168 9 192 0 SNX18
SE_00_001500227 chr5:54614996-54681702 Sample_00_0015 Lung IMR-90 227 14 1951 145 5 143 0 SNX18
SE_02_021000190 chr5:54618265-54679090 Sample_02_0210 Lung MRC-5_N_1DPT 190 11 1805 134 5 125 0 SNX18
SE_01_007300440 chr5:54619391-54721066 Sample_01_0073 Coronary artery coronary-artery 440 19 2964 191 11 200 0 SNX18
SE_00_002900853 chr5:54620240-54656549 Sample_00_0029 Ovary ovary 853 10 1088 83 1 93 0 SNX18
SE_02_038700471 chr5:54642849-54676318 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 471 12 1015 75 5 72 0 SNX18
SE_02_026300901 chr5:54643818-54704822 Sample_02_0263 Osteoblastic hFOB_undifferentiated 901 10 1791 100 9 134 0 SNX18
SE_02_034100480 chr5:54650439-54705281 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 480 6 1547 88 9 116 0 SNX18
SE_02_030200185 chr5:54669068-54712580 Sample_02_0302 Neuroblastoma IMR32 185 5 1213 48 7 89 0 SNX18
SE_00_000400394 chr5:54689469-54703977 Sample_00_0004 Aorta aorta 394 7 405 9 4 37 0 SNX18
SE_00_001500073 chr5:54696711-54762992 Sample_00_0015 Lung IMR-90 73 10 1978 89 13 72 0 SNX18
SE_02_020900107 chr5:54696845-54765027 Sample_02_0209 Lung MRC-5_MRC5_1DPT 107 15 2025 91 13 72 0 SNX18
SE_02_038200798 chr5:54697808-54746645 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 798 6 1433 70 7 59 0 SNX18
SE_02_017200520 chr5:54698460-54763095 Sample_02_0172 Lung IMR-90_quiescent 520 8 1927 88 12 70 0 SNX18
SE_02_005400389 chr5:54700467-54762542 Sample_02_0054 Lung IMR-90_DMSO_1 389 8 1868 87 10 66 0 SNX18
SE_02_021000048 chr5:54702950-54776247 Sample_02_0210 Lung MRC-5_N_1DPT 48 16 2161 95 11 82 0 SNX18
SE_01_001700227 chr5:54717875-54728968 Sample_01_0017 Muscle A673 227 2 320 20 0 22 0 SNX18
SE_01_006400052 chr5:54718162-54746433 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 52 4 843 44 2 37 0 SNX18
SE_02_021100803 chr5:54725508-54765180 Sample_02_0211 Lung MRC-5_NFD_1DPT 803 12 1196 45 8 32 0 SNX18
SE_02_026300597 chr5:54737787-54763523 Sample_02_0263 Osteoblastic hFOB_undifferentiated 597 3 806 32 6 25 0 SNX18
SE_02_005500493 chr5:54737851-54762770 Sample_02_0055 Lung IMR-90_Nutlin-3a 493 4 789 32 6 25 0 SNX18
SE_02_028200437 chr5:54740782-54762415 Sample_02_0282 Lung IMR-90 437 5 677 20 6 25 0 SNX18
Genomic distribution of SEs associated with SNX18
Genome Browser

The strength of the tissue affected by the gene

Expression of SNX18

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)