SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000108055
Gene: SMC3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:110567695-110606048 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_049400042 chr10:110520510-110571334 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 42 11 1396 39 10 135 148 SMC3,DUSP5
SE_02_130400816 chr10:110524846-110574526 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 816 19 1353 38 10 99 176 SMC3,DUSP5
SE_02_115400318 chr10:110527667-110575194 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 318 11 1291 39 9 78 179 SMC3,DUSP5
SE_00_002001309 chr10:110543893-110572057 Sample_00_0020 Large intestine large-intestine_108d 1309 3 768 20 5 33 148 SMC3,DUSP5
SE_02_075400031 chr10:110548463-110571752 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 31 4 649 17 5 30 148 SMC3
SE_02_075700136 chr10:110550430-110570682 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 136 4 569 15 5 29 148 SMC3
SE_02_020700306 chr10:110551977-110571062 Sample_02_0207 Stomach FU97 306 7 537 15 5 30 148 SMC3
SE_02_003801823 chr10:110552185-110571807 Sample_02_0038 Embryo DE 1823 4 552 17 4 30 148 SMC3
SE_02_049500389 chr10:110552318-110559028 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 389 4 193 6 4 0 0 SMC3
Genomic distribution of SEs associated with SMC3
Genome Browser

The strength of the tissue affected by the gene

Expression of SMC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)