SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000234855
Gene: SLIT1-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr10:97102756-97104355 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600393 chr10:96997212-97098663 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 393 44 2837 75 8 338 4017 SLIT1,C10ORF12,SLIT1-AS1
SE_02_110200111 chr10:97037779-97196755 Sample_02_1102 Brain LA-N-5 111 73 4438 268 20 371 2489 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_085700066 chr10:97060070-97191385 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 66 36 3648 246 17 293 1307 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_110500287 chr10:97073285-97183368 Sample_02_1105 Brain NBL-S 287 33 3072 234 16 239 532 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_066300143 chr10:97094935-97140200 Sample_02_0663 Thyroid TT 143 15 1277 128 8 152 203 SLIT1,SLIT1-AS1
SE_02_096800096 chr10:97095551-97166061 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 96 16 1966 168 12 211 532 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_118700506 chr10:97096276-97163880 Sample_02_1187 Brain GBM16 506 22 1868 163 11 211 428 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_123900268 chr10:97106815-97142055 Sample_02_1239 Skin Waga_virus_positive 268 12 992 97 5 141 0 SLIT1,SLIT1-AS1
SE_02_123700606 chr10:97109091-97141554 Sample_02_1237 Skin MKL2_virus_positive 606 13 905 85 5 140 0 SLIT1,SLIT1-AS1
SE_02_106300265 chr10:97116205-97164061 Sample_02_1063 Brain CLB-GA-control 265 12 1309 96 7 156 225 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_097600213 chr10:97116392-97150424 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 213 10 972 75 5 128 0 SLIT1,SLIT1-AS1
SE_02_098400253 chr10:97116392-97150441 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 253 9 972 75 5 129 0 SLIT1,SLIT1-AS1
SE_02_106400358 chr10:97116491-97164556 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 358 11 1325 97 7 156 225 ARHGAP19-SLIT1,SLIT1,SLIT1-AS1
SE_02_097300337 chr10:97123573-97142224 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 337 4 553 44 3 74 0 SLIT1,SLIT1-AS1
SE_02_141700198 chr10:97123903-97141553 Sample_02_1417 Brain SF7761 198 7 512 42 3 74 0 SLIT1,SLIT1-AS1
Genomic distribution of SEs associated with SLIT1-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of SLIT1-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)