SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000180638
Gene: SLC47A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:19678288-19718979 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_133100591 chr17:19691870-19728832 Sample_02_1331 Blood Molm13_CTRL 591 12 1100 116 2 21 1598 SLC47A2,ALDH3A1,ALDH3A2
SE_02_098901601 chr17:19700283-19729445 Sample_02_0989 Kidney kidney cortex_WT 1601 6 916 78 2 22 1598 SLC47A2,ALDH3A1
SE_01_008700874 chr17:19701974-19731838 Sample_01_0087 Thyroid gland thyroid-gland 874 4 956 82 2 22 1598 SLC47A2,ALDH3A1
SE_01_010500551 chr17:19701984-19731452 Sample_01_0105 Thyroid gland thyroid gland_54y 551 5 938 80 2 22 1598 SLC47A2,ALDH3A1
SE_02_001101082 chr17:19702375-19729679 Sample_02_0011 Kidney A-498_wtVHL 1082 9 867 74 2 22 1598 SLC47A2,ALDH3A1
SE_02_049100820 chr17:19702384-19730158 Sample_02_0491 Pharyng Detroit 562-Control 820 7 886 77 2 22 1598 SLC47A2,ALDH3A1
SE_02_051700461 chr17:19702492-19710383 Sample_02_0517 Esophagus TE5 461 1 227 16 1 4 804 SLC47A2,ALDH3A1
SE_02_050600468 chr17:19702496-19710379 Sample_02_0506 Esophagus TE5_1 468 1 227 16 1 4 803 SLC47A2,ALDH3A1
SE_02_074501316 chr17:19702579-19705559 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1316 1 77 3 0 2 335 SLC47A2,ALDH3A1
SE_02_074400697 chr17:19702771-19705451 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 697 1 69 2 0 2 291 SLC47A2,ALDH3A1
SE_02_119200361 chr17:19703431-19731653 Sample_02_1192 Brain GBM26 361 8 908 79 2 21 1465 SLC47A2,ALDH3A1
SE_02_102700295 chr17:19703434-19731837 Sample_02_1027 Esophagus KYSE180_1 295 10 919 80 2 21 1465 SLC47A2,ALDH3A1
SE_02_138400675 chr17:19703480-19738575 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 675 9 1114 97 2 23 1638 SLC47A2,ALDH3A1
SE_02_102500402 chr17:19703525-19731634 Sample_02_1025 Esophagus KYSE150 402 7 905 79 2 21 1465 SLC47A2,ALDH3A1
SE_02_005701203 chr17:19703650-19728902 Sample_02_0057 Mammary gland vHMEC 1203 7 816 73 2 21 1465 SLC47A2,ALDH3A1
SE_02_050400056 chr17:19703657-19756428 Sample_02_0504 Esophagus KYSE510_1 56 27 1670 135 3 84 3061 SLC47A2,ALDH3A1
SE_02_154100516 chr17:19703814-19729362 Sample_02_1541 Nasopharyngeal HNE1 516 8 827 73 2 21 1465 SLC47A2,ALDH3A1
SE_02_093500478 chr17:19703881-19729361 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 478 7 827 73 2 21 1464 SLC47A2,ALDH3A1
SE_02_029300072 chr17:19704896-19756557 Sample_02_0293 Pancreatic L3-6_4SC-202 72 9 1646 135 3 83 2905 ALDH3A1,SLC47A2
SE_02_022800052 chr17:19705200-19756656 Sample_02_0228 Oesophagus KYSE510 52 8 1635 135 3 83 2905 ALDH3A1,SLC47A2
SE_02_029400146 chr17:19705233-19756188 Sample_02_0294 Pancreatic L3-6_DMSO 146 5 1621 134 3 83 2905 ALDH3A1,SLC47A2
SE_02_005600757 chr17:19705599-19729007 Sample_02_0056 Mammary gland HMEC 757 5 766 71 2 20 1226 SLC47A2,ALDH3A1
SE_02_113200506 chr17:19705784-19730332 Sample_02_1132 Pancreas KLM1 wt 506 10 800 72 2 20 1218 SLC47A2,ALDH3A1
SE_02_006300670 chr17:19705865-19729303 Sample_02_0063 Skin Keratinocytes 670 3 766 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_113100018 chr17:19705994-19754954 Sample_02_1131 Pancreas T3M4 wt 18 18 1542 128 3 83 2814 SLC47A2,ALDH3A1
SE_00_001100826 chr17:19706188-19729029 Sample_00_0011 Esophagus esophagus 826 5 745 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_094500035 chr17:19706269-19729664 Sample_02_0945 Brain SF767 35 6 759 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_060100070 chr17:19706271-19729484 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 70 5 756 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_049201093 chr17:19706285-19729984 Sample_02_0492 Pharyng Detroit 562_LPS 1093 6 769 71 2 20 1218 SLC47A2,ALDH3A1
SE_02_103700613 chr17:19706320-19728834 Sample_02_1037 Pharynx FaDu Control 613 7 734 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_066100784 chr17:19706401-19729025 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 784 8 738 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_094800915 chr17:19706409-19729349 Sample_02_0948 Pharyng Detroit562 915 4 748 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_060000081 chr17:19706426-19729599 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 81 5 752 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_072500086 chr17:19706445-19729444 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 86 15 747 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_133800322 chr17:19706450-19729272 Sample_02_1338 Esophagus KYSE180 322 8 746 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_060400075 chr17:19706451-19729672 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 75 4 752 69 2 20 1218 SLC47A2,ALDH3A1
SE_02_022700056 chr17:19706508-19728935 Sample_02_0227 Oesophagus TE7 56 11 732 69 2 20 1199 SLC47A2,ALDH3A1
SE_02_050700063 chr17:19706520-19730149 Sample_02_0507 Esophagus TE7_1 63 14 767 72 2 20 1199 SLC47A2,ALDH3A1
SE_02_059500060 chr17:19706548-19729580 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 60 5 749 69 2 20 1186 SLC47A2,ALDH3A1
SE_02_060300245 chr17:19706581-19729465 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 245 6 745 69 2 20 1172 SLC47A2,ALDH3A1
SE_02_053000470 chr17:19706619-19729957 Sample_02_0530 Mammary gland MCF10A 470 9 754 71 2 20 1168 SLC47A2,ALDH3A1
SE_02_130500014 chr17:19706628-19754010 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 14 14 1486 126 3 83 2761 SLC47A2,ALDH3A1
SE_02_059600240 chr17:19706642-19730149 Sample_02_0596 Mammary gland MCF10A_ DMSO 240 6 755 71 2 20 1160 SLC47A2,ALDH3A1
SE_02_048001225 chr17:19706677-19729054 Sample_02_0480 Gingival epithelial HGEP 1225 9 721 68 2 20 1153 SLC47A2,ALDH3A1,ALDH3A2
SE_02_060200184 chr17:19706694-19729502 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 184 5 732 68 2 19 1149 SLC47A2,ALDH3A1
SE_02_135700627 chr17:19706868-19728840 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 627 10 708 67 2 18 1103 SLC47A2,ALDH3A1
SE_02_059700284 chr17:19707409-19729351 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 284 5 709 66 2 18 1088 SLC47A2,ALDH3A1
SE_02_112100778 chr17:19707502-19728845 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 778 9 687 66 2 18 1088 SLC47A2,ALDH3A1
SE_02_118200509 chr17:19714218-19731601 Sample_02_1182 Brain GBM11 509 7 575 57 0 15 589 SLC47A2,ALDH3A1
SE_02_051700422 chr17:19715778-19723636 Sample_02_0517 Esophagus TE5 422 1 275 25 0 0 392 SLC47A2,ALDH3A1
SE_02_050600132 chr17:19715791-19730757 Sample_02_0506 Esophagus TE5_1 132 1 484 52 0 15 392 SLC47A2,ALDH3A1
SE_02_072600541 chr17:19719072-19728946 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 541 7 334 41 0 15 9 ALDH3A1,SLC47A2
SE_02_107800509 chr17:19720494-19731343 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 509 6 336 34 0 15 0 ALDH3A1,SLC47A2
SE_00_002900778 chr17:19721269-19736559 Sample_00_0029 Ovary ovary 778 7 463 48 0 15 0 ALDH3A1,SLC47A2
SE_02_051700560 chr17:19723693-19730762 Sample_02_0517 Esophagus TE5 560 1 207 27 0 15 0 ALDH3A1,SLC47A2
SE_02_037600409 chr17:19723722-19729583 Sample_02_0376 Skeletal muscle RMS237 409 2 172 22 0 15 0 ALDH3A1,SLC47A2
SE_02_142600876 chr17:19724335-19731719 Sample_02_1426 Shoulder fibroblast_341 876 4 222 25 0 15 0 ALDH3A1,SLC47A2
SE_02_142500753 chr17:19724352-19731522 Sample_02_1425 Shoulder fibroblast_384 753 4 214 24 0 15 0 ALDH3A1,SLC47A2
SE_02_037000708 chr17:19725929-19730519 Sample_02_0370 Skeletal muscle RH4 708 1 133 17 0 15 0 ALDH3A1,SLC47A2
SE_00_002600830 chr17:19726254-19729239 Sample_00_0026 Muscle of trunk muscle-of-trunk 830 1 90 14 0 15 0 ALDH3A1,SLC47A2
Genomic distribution of SEs associated with SLC47A2
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC47A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)