Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000145604 |
| Gene: | SKP2 | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr5:36151989-36196849 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_017700616 | chr5:36144917-36160139 |
Sample_02_0177 | Urinary bladder | J82 | 616 | 1 | 401 | 34 | 3 | 57 | 321 | SKP2,MIR580,LMBRD2 |
| SE_02_032200470 | chr5:36148919-36164754 |
Sample_02_0322 | Colon | Caco-2 | 470 | 1 | 433 | 35 | 1 | 63 | 346 | SKP2,LMBRD2,MIR580 |
| SE_02_030800367 | chr5:36148998-36161989 |
Sample_02_0308 | Neuroblastoma | SJNB1 | 367 | 2 | 352 | 29 | 1 | 62 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_031500343 | chr5:36149549-36161032 |
Sample_02_0315 | Neuroblastoma | TR14 | 343 | 2 | 315 | 26 | 1 | 57 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_148000637 | chr5:36149669-36161681 |
Sample_02_1480 | Bone | MHH-ES-1 | 637 | 3 | 325 | 26 | 0 | 62 | 296 | LMBRD2,SKP2,MIR580 |
| SE_02_147600418 | chr5:36149775-36158223 |
Sample_02_1476 | Bone | EW-1 | 418 | 1 | 225 | 20 | 0 | 54 | 296 | LMBRD2,SKP2,MIR580 |
| SE_02_031300389 | chr5:36149992-36165247 |
Sample_02_0313 | Neuroblastoma | SK-N-DZ | 389 | 2 | 413 | 34 | 0 | 66 | 346 | SKP2,LMBRD2,MIR580 |
| SE_02_147800217 | chr5:36150134-36174838 |
Sample_02_1478 | Bone | EW-3 | 217 | 5 | 641 | 61 | 0 | 86 | 533 | LMBRD2,SKP2,MIR580 |
| SE_02_031900515 | chr5:36150135-36163583 |
Sample_02_0319 | Neuroblastoma | NB-EBc1 | 515 | 2 | 374 | 32 | 0 | 63 | 299 | SKP2,LMBRD2,MIR580 |
| SE_02_031000531 | chr5:36150239-36161297 |
Sample_02_0310 | Neuroblastoma | SJNB8 | 531 | 1 | 307 | 26 | 0 | 57 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_042100581 | chr5:36150373-36162650 |
Sample_02_0421 | Brain | BE2C_3 | 581 | 2 | 338 | 29 | 0 | 63 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_110400714 | chr5:36150488-36171844 |
Sample_02_1104 | Brain | NB-69 | 714 | 3 | 565 | 53 | 0 | 84 | 524 | LMBRD2,SKP2,MIR580 |
| SE_02_148100432 | chr5:36150500-36169229 |
Sample_02_1481 | Bone | MIC | 432 | 5 | 501 | 41 | 0 | 80 | 453 | LMBRD2,SKP2,MIR580 |
| SE_02_110900567 | chr5:36150564-36164912 |
Sample_02_1109 | Brain | SK-N-FI | 567 | 3 | 395 | 33 | 0 | 65 | 346 | LMBRD2,SKP2,MIR580 |
| SE_02_147500574 | chr5:36150653-36178117 |
Sample_02_1475 | Bone | CHLA-25 | 574 | 4 | 700 | 72 | 0 | 94 | 575 | LMBRD2,SKP2,MIR580 |
| SE_02_061000450 | chr5:36150680-36159694 |
Sample_02_0610 | Liposarcoma | MLS 1765-92 | 450 | 1 | 250 | 22 | 0 | 56 | 296 | LMBRD2,SKP2,MIR580 |
| SE_02_143400467 | chr5:36150720-36169478 |
Sample_02_1434 | Trophoblast | trophoblast stem cells | 467 | 3 | 502 | 41 | 0 | 79 | 453 | LMBRD2,SKP2,MIR580 |
| SE_02_037800350 | chr5:36150770-36162680 |
Sample_02_0378 | Skeletal muscle | SCMC | 350 | 2 | 329 | 29 | 0 | 62 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_037000566 | chr5:36150816-36161998 |
Sample_02_0370 | Skeletal muscle | RH4 | 566 | 2 | 309 | 27 | 0 | 60 | 296 | SKP2,LMBRD2,MIR580 |
| SE_02_114900486 | chr5:36150874-36159046 |
Sample_02_1149 | Kidney | WT 9-12_control_Nrf2_SFN | 486 | 1 | 219 | 21 | 0 | 54 | 296 | LMBRD2,SKP2,MIR580 |
| SE_02_143500316 | chr5:36151213-36169349 |
Sample_02_1435 | Trophoblast | trophoblast stem cells_MSX2_KD | 316 | 6 | 487 | 41 | 0 | 77 | 453 | LMBRD2,SKP2,MIR580 |
| SE_02_124600560 | chr5:36152044-36175011 |
Sample_02_1246 | Brain | LAN5_ATRA | 560 | 7 | 596 | 60 | 0 | 74 | 385 | SKP2,MIR580,LMBRD2 |
| SE_02_074100284 | chr5:36152106-36162373 |
Sample_02_0741 | Muscle | RH30 | 284 | 2 | 290 | 26 | 0 | 50 | 135 | SKP2,MIR580,LMBRD2 |
| SE_02_141300499 | chr5:36152106-36174481 |
Sample_02_1413 | Muscle | RH4_sgBRG1 | 499 | 2 | 585 | 59 | 0 | 72 | 372 | SKP2,MIR580,LMBRD2 |
| SE_02_074000328 | chr5:36152122-36162400 |
Sample_02_0740 | Muscle | RH3 | 328 | 1 | 290 | 26 | 0 | 50 | 132 | SKP2,MIR580,LMBRD2 |
| SE_02_003000241 | chr5:36152241-36158487 |
Sample_02_0030 | Kidney | human kidney proximal tubule cells | 241 | 3 | 165 | 19 | 0 | 42 | 113 | SKP2,MIR580,LMBRD2 |
| SE_02_106400772 | chr5:36153986-36161295 |
Sample_02_1064 | Brain | CLB-GA-Dinaciclib_8h | 772 | 4 | 208 | 19 | 0 | 17 | 0 | SKP2,MIR580,LMBRD2 |
| SE_02_084001055 | chr5:36154070-36178691 |
Sample_02_0840 | Embryo | hNPCs_R1159Q/+ | 1055 | 8 | 619 | 68 | 0 | 55 | 279 | SKP2,MIR580,LMBRD2 |
| SE_02_122300756 | chr5:36158061-36179278 |
Sample_02_1223 | Bone marrow | KMS28BM | 756 | 5 | 524 | 58 | 0 | 41 | 279 | SKP2,MIR580,LMBRD2 |
Genomic distribution of SEs associated with SKP2