SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196470
Gene: SIAH1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:48356364-48448402 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600013 chr16:48282101-48520700 Sample_02_1036 Mammary gland HCC70_XY018 13 97 5921 307 20 279 1784 SIAH1,LONP2,LOC100507577,ABCC11
SE_02_017200859 chr16:48316671-48395007 Sample_02_0172 Lung IMR-90_quiescent 859 11 1820 104 7 175 1344 LONP2,SIAH1
SE_02_044500840 chr16:48353200-48394071 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 840 14 972 57 0 125 889 SIAH1,LONP2,LOC100507577
SE_02_101700491 chr16:48353276-48406189 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 491 9 1289 77 0 132 941 SIAH1,LONP2,LOC100507577
SE_02_046500492 chr16:48353295-48394917 Sample_02_0465 Adipose subcutaneous adipocytes 492 17 989 58 0 126 886 SIAH1,LONP2,LOC100507577
SE_02_032000574 chr16:48354225-48386144 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 574 8 754 44 0 108 628 SIAH1
SE_02_032100652 chr16:48354243-48386290 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 652 7 758 44 0 108 628 SIAH1
SE_00_003100157 chr16:48356644-48413391 Sample_00_0031 Placenta placenta 157 9 1386 77 0 144 799 SIAH1
SE_01_008200451 chr16:48356968-48411875 Sample_01_0082 Right lobe of liver right-lobe-of-liver 451 10 1336 75 0 144 786 SIAH1
SE_02_142900835 chr16:48357818-48384744 Sample_02_1429 Blood GM12878_WT 835 11 661 34 0 99 366 SIAH1,LOC100507577,LONP2
SE_02_092900114 chr16:48358568-48412611 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 114 33 1325 73 0 144 786 SIAH1,LOC100507577
SE_02_093000258 chr16:48358600-48414148 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 258 34 1357 73 0 146 786 SIAH1,LOC100507577
SE_02_006500329 chr16:48360478-48384827 Sample_02_0065 Embryo KO2-Late_G1 329 5 591 30 0 97 355 SIAH1
SE_02_076100341 chr16:48360622-48386563 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 341 12 623 32 0 101 522 SIAH1,LOC100507577
SE_02_017000315 chr16:48363087-48397655 Sample_02_0170 Prostate LNCaP_R1881_DOX 315 5 843 45 0 57 535 SIAH1
SE_01_008501306 chr16:48363200-48411404 Sample_01_0085 Stomach stomach 1306 7 1176 64 0 73 573 SIAH1
SE_02_055500174 chr16:48363207-48386501 Sample_02_0555 Other HAP1_WT 174 4 567 29 0 37 318 SIAH1,LOC100507577
SE_02_075400818 chr16:48363295-48384775 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 818 5 534 27 0 28 153 SIAH1,LOC100507577
SE_02_054900103 chr16:48363426-48368444 Sample_02_0549 Other Aska shCt 103 2 119 5 0 5 153 SIAH1,LOC100507577
SE_02_093700355 chr16:48363596-48387520 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 355 8 580 29 0 43 432 SIAH1,LOC100507577
SE_02_032700411 chr16:48364037-48411282 Sample_02_0327 Liver hepatocytes_d6 411 8 1164 64 0 73 573 SIAH1
SE_02_012400188 chr16:48364098-48433337 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 188 10 1716 95 1 82 573 SIAH1
SE_02_122300366 chr16:48364138-48386195 Sample_02_1223 Bone marrow KMS28BM 366 5 542 29 0 37 310 SIAH1,LOC100507577
SE_02_032500543 chr16:48364145-48411279 Sample_02_0325 Liver hepatocytes_d1 543 6 1161 64 0 73 573 SIAH1
SE_02_032600868 chr16:48364270-48384880 Sample_02_0326 Liver hepatocytes_d3 868 3 516 26 0 29 153 SIAH1
SE_02_006300824 chr16:48364380-48411300 Sample_02_0063 Skin Keratinocytes 824 7 1156 63 0 73 573 SIAH1
SE_02_003900507 chr16:48364386-48386476 Sample_02_0039 Embryo AFG 507 5 545 28 0 37 314 SIAH1
SE_02_009900507 chr16:48364588-48411167 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 507 6 1153 63 0 73 573 SIAH1
SE_02_006700601 chr16:48364751-48384534 Sample_02_0067 Embryo AzH-G2/M 601 4 500 26 0 22 153 SIAH1
SE_00_003300505 chr16:48364823-48394877 Sample_00_0033 Psoas muscle psoas-muscle_3y 505 4 731 39 0 55 521 SIAH1
SE_02_004200475 chr16:48364973-48386562 Sample_02_0042 Embryo endodermal CyT49_ES_D0 475 3 532 28 0 37 322 SIAH1
SE_02_009700759 chr16:48365170-48368336 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 759 1 79 4 0 5 153 SIAH1
SE_02_103500054 chr16:48368334-48444113 Sample_02_1035 Mammary gland HCC70_Vehicle 54 35 1906 109 2 81 420 SIAH1,LOC100507577
SE_02_096500692 chr16:48373194-48395178 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 692 4 534 25 0 50 368 SIAH1,LOC100507577
SE_02_047600288 chr16:48373580-48411089 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 288 12 924 47 0 68 420 SIAH1,LOC100507577
SE_02_061400679 chr16:48376629-48395541 Sample_02_0614 Liposarcoma MLPS_T2 679 5 468 22 0 50 368 SIAH1,LOC100507577
SE_02_109400297 chr16:48377973-48394402 Sample_02_1094 Embryo H9_0Dox 297 6 401 17 0 50 368 SIAH1,LOC100507577
SE_02_074600454 chr16:48379225-48386321 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 454 3 188 6 0 29 157 SIAH1,LOC100507577
SE_02_093500383 chr16:48381968-48387336 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 383 2 123 2 0 34 258 SIAH1,LOC100507577
SE_02_009300404 chr16:48382537-48395518 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 404 2 312 15 0 46 368 SIAH1
SE_01_003700901 chr16:48382647-48411306 Sample_01_0037 Liver hepatocyte 901 4 700 37 0 64 420 SIAH1
SE_02_144000070 chr16:48382855-48411371 Sample_02_1440 Cytotrophoblast Cytotrophoblast 70 4 696 37 0 60 420 SIAH1,LOC100507577
SE_02_101600542 chr16:48382869-48404533 Sample_02_1016 Embryo H9_Mesendoderm_24h 542 4 539 29 0 48 420 SIAH1,LOC100507577
SE_02_049400535 chr16:48382873-48386328 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 535 2 80 2 0 23 157 SIAH1,LOC100507577
SE_02_049500593 chr16:48382874-48386503 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 593 1 87 2 0 23 165 SIAH1,LOC100507577
SE_02_025700449 chr16:48382904-48414651 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 449 4 785 41 1 61 420 SIAH1
SE_02_004900524 chr16:48383228-48386652 Sample_02_0049 Embryo endodermal CyT49_GTtoH 524 1 80 2 0 22 173 SIAH1
SE_02_004800434 chr16:48383239-48410724 Sample_02_0048 Embryo endodermal CyT49_HE 434 6 675 37 0 58 420 SIAH1
SE_02_081601339 chr16:48383240-48413949 Sample_02_0816 Ovary Clear cell ovarian cancer 1339 6 753 39 0 60 420 SIAH1,LOC100507577
SE_02_003801456 chr16:48383320-48386470 Sample_02_0038 Embryo DE 1456 1 75 2 0 21 161 SIAH1
SE_00_002400948 chr16:48383645-48386562 Sample_00_0024 Embryo mesendoderm 948 1 69 2 0 20 169 SIAH1
SE_00_001001240 chr16:48383650-48386371 Sample_00_0010 Embryo endodermal-cell 1240 1 62 2 0 20 157 SIAH1
SE_02_047500754 chr16:48405433-48458528 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 754 14 1382 73 3 60 249 LOC100507577,SIAH1
SE_02_121800472 chr16:48419570-48458534 Sample_02_1218 Bone marrow Daudi 472 9 1036 50 2 45 249 SIAH1
SE_02_133000469 chr16:48426709-48471945 Sample_02_1330 Blood AMU-AML1 469 16 1192 55 3 39 249 SIAH1
SE_02_131700600 chr16:48426770-48459104 Sample_02_1317 Brain hMGLs_SORL1-KO 600 8 870 46 2 39 249 SIAH1
SE_02_131600618 chr16:48426775-48459308 Sample_02_1316 Brain hMGLs_TREM2-R47H 618 7 873 46 2 39 249 SIAH1
SE_02_104603381 chr16:48432966-48458396 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3381 7 712 36 2 39 249 SIAH1
SE_02_009300684 chr16:48478399-48512393 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 684 4 956 44 7 7 0 SIAH1
Genomic distribution of SEs associated with SIAH1
Genome Browser

The strength of the tissue affected by the gene

Expression of SIAH1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)