SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000160999
Gene: SH2B2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:102285091-102321711 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103200459 chr7:102029960-102082461 Sample_02_1032 Head and neck SCC1 JQ1 459 12 1498 111 3 80 64 CUX1,SH2B2
SE_02_026700184 chr7:102041325-102081018 Sample_02_0267 Kidney 786-O 184 9 1164 100 2 77 64 CUX1,SH2B2
SE_02_103600748 chr7:102045279-102177410 Sample_02_1036 Mammary gland HCC70_XY018 748 56 3852 338 8 241 450 CUX1,SH2B2
SE_02_127300411 chr7:102049428-102102805 Sample_02_1273 Cervix HeLa 411 9 1556 169 3 91 140 CUX1,SH2B2
SE_02_153900728 chr7:102050384-102102140 Sample_02_1539 Nasopharyngeal C666-1 728 19 1508 161 3 91 140 CUX1,SH2B2
SE_02_093001232 chr7:102050774-102101152 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1232 18 1459 160 3 91 140 CUX1,SH2B2
SE_02_154100531 chr7:102050792-102101876 Sample_02_1541 Nasopharyngeal HNE1 531 14 1491 160 3 91 140 CUX1,SH2B2
SE_02_032400063 chr7:102058160-102105738 Sample_02_0324 Colon SW48 63 5 1389 149 4 102 189 CUX1,SH2B2
SE_02_026800536 chr7:102060062-102080981 Sample_02_0268 Kidney A-498 536 4 596 51 2 43 64 CUX1,SH2B2
SE_02_001000601 chr7:102060369-102081343 Sample_02_0010 Kidney A-498_emptyvector 601 3 611 49 2 43 64 CUX1,SH2B2
SE_02_105500052 chr7:102060544-102102281 Sample_02_1055 Esophagus KYAE1 52 6 1200 124 3 91 140 CUX1,SH2B2
SE_02_103501277 chr7:102060662-102154182 Sample_02_1035 Mammary gland HCC70_Vehicle 1277 33 2649 254 7 185 314 CUX1,SH2B2
SE_02_008500076 chr7:102060928-102102438 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 76 5 1197 123 3 91 140 CUX1,SH2B2
SE_02_092900622 chr7:102060979-102102226 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 622 19 1190 122 3 91 140 CUX1,SH2B2
SE_02_008400065 chr7:102061025-102103190 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 65 5 1218 128 4 91 140 CUX1,SH2B2
SE_02_008200111 chr7:102061054-102102294 Sample_02_0082 Oral cavity KB_IL-1alpha 111 4 1190 123 3 91 140 CUX1,SH2B2
SE_02_046900521 chr7:102061287-102065222 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 521 5 125 7 0 4 0 CUX1,SH2B2
SE_02_135500972 chr7:102061536-102079881 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 972 3 515 42 1 22 64 CUX1,SH2B2
SE_01_003600232 chr7:102061588-102102014 Sample_01_0036 Cervix HeLa-S3 232 5 1167 121 3 91 140 CUX1,SH2B2
SE_02_058800139 chr7:102061907-102101585 Sample_02_0588 Cervix HeLa Kyoto_untreated 139 21 1139 120 3 91 140 CUX1,SH2B2
SE_02_008300053 chr7:102062798-102103140 Sample_02_0083 Oral cavity KB_untreat 53 3 1166 125 4 91 140 CUX1,SH2B2
SE_02_058900089 chr7:102064053-102101701 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 89 16 1077 116 3 88 140 CUX1,SH2B2
SE_02_120500330 chr7:102064057-102176901 Sample_02_1205 Brain NB3 330 47 3279 285 8 213 450 CUX1,SH2B2
SE_02_059000250 chr7:102078979-102101646 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 250 16 664 83 2 70 76 CUX1,SH2B2
SE_02_088400378 chr7:102090384-102102776 Sample_02_0884 Colon LoVo 378 2 378 63 1 48 76 CUX1,SH2B2
SE_02_032200768 chr7:102091664-102101830 Sample_02_0322 Colon Caco-2 768 1 317 57 1 48 76 CUX1,SH2B2
SE_02_023700633 chr7:102091851-102105230 Sample_02_0237 Colon V389 633 3 428 70 2 57 125 CUX1,SH2B2
SE_02_142100039 chr7:102091973-102099852 Sample_02_1421 Brain NHA 39 2 243 49 1 48 76 CUX1,SH2B2
SE_02_088601261 chr7:102093270-102153810 Sample_02_0886 Skin foreskin_ p63KLF4 1261 20 1731 180 5 142 250 CUX1,SH2B2,SPDYE6
SE_02_020200362 chr7:102093680-102100812 Sample_02_0202 Stomach YCC7 362 4 229 46 1 48 76 CUX1,SH2B2
SE_02_041500200 chr7:102093680-102101851 Sample_02_0415 Stomach YCC22 200 4 265 48 1 48 76 CUX1,SH2B2
SE_02_020400310 chr7:102093747-102098681 Sample_02_0204 Stomach IM95 310 2 157 37 1 43 76 CUX1,SH2B2
SE_01_009500254 chr7:102094797-102154202 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 254 11 1696 172 5 118 250 CUX1,SH2B2
SE_04_000900569 chr7:102097121-102137084 Sample_04_0009 Lung A549 569 7 1160 118 5 90 250 CUX1,SH2B2
SE_02_074000531 chr7:102098038-102130128 Sample_02_0740 Muscle RH3 531 7 972 102 5 66 174 CUX1,SH2B2
SE_02_103200144 chr7:102101637-102188210 Sample_02_1032 Head and neck SCC1 JQ1 144 35 2533 184 5 161 406 CUX1,SH2B2
SE_02_096300418 chr7:102106331-102130047 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 418 4 693 65 3 48 125 CUX1,SH2B2
SE_02_108000086 chr7:102111321-102130072 Sample_02_1080 Muscle JR1 shCtrl 86 6 588 54 3 49 125 CUX1,SH2B2
SE_02_104600099 chr7:102115979-102353382 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 99 69 6666 489 14 775 6090 MIR4285,SPDYE6,SH2B2,CUX1,LOC100289561,PRKRIP1
SE_02_085800355 chr7:102116269-102126311 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 355 1 291 28 2 22 0 CUX1,SH2B2
SE_02_149300531 chr7:102116589-102135471 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 531 4 537 46 3 47 0 CUX1,SH2B2
SE_02_006800678 chr7:102116753-102125759 Sample_02_0068 Skin A375_DMSO 678 6 259 22 2 22 0 CUX1,SH2B2
SE_02_057200750 chr7:102117236-102125344 Sample_02_0572 Brain LN229_1_mM_glucose 750 4 233 18 0 22 0 CUX1,SH2B2
SE_02_094200147 chr7:102117369-102123363 Sample_02_0942 Brain LN229 147 4 153 13 0 22 0 CUX1,SH2B2,SPDYE6
SE_02_057100693 chr7:102117427-102125308 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 693 6 226 18 0 22 0 CUX1,SH2B2
SE_02_117400944 chr7:102117448-102147396 Sample_02_1174 Brain GBM02 944 10 800 67 3 56 0 CUX1,SH2B2
SE_02_001000456 chr7:102117463-102136457 Sample_02_0010 Kidney A-498_emptyvector 456 6 529 44 3 47 0 CUX1,SH2B2
SE_02_057000521 chr7:102117465-102126010 Sample_02_0570 Brain LN229_10_mM_glucose 521 5 248 22 2 22 0 CUX1,SH2B2
SE_02_028600471 chr7:102119406-102136170 Sample_02_0286 Liver HuH7_IL-1alpha_1h 471 3 472 38 3 46 0 CUX1,SH2B2
SE_02_010300440 chr7:102119504-102142579 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 440 4 624 49 3 47 0 CUX1,SH2B2
SE_02_026800431 chr7:102121311-102135998 Sample_02_0268 Kidney A-498 431 4 417 35 3 32 0 CUX1,SH2B2
SE_02_001100085 chr7:102121413-102171132 Sample_02_0011 Kidney A-498_wtVHL 85 8 1429 100 4 73 136 CUX1,SH2B2
SE_02_041500327 chr7:102121634-102135842 Sample_02_0415 Stomach YCC22 327 6 408 35 3 32 0 CUX1,SH2B2
SE_02_058900407 chr7:102121695-102136185 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 407 14 416 35 3 32 0 CUX1,SH2B2,SPDYE6
SE_02_092900504 chr7:102121703-102157686 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 504 15 1002 76 3 47 0 CUX1,SH2B2
SE_02_058800545 chr7:102121799-102135966 Sample_02_0588 Cervix HeLa Kyoto_untreated 545 17 404 34 3 32 0 CUX1,SH2B2,SPDYE6
SE_02_059000589 chr7:102121819-102135574 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 589 10 397 34 3 32 0 CUX1,SH2B2
SE_02_000400063 chr7:102143293-102239910 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 63 23 2878 146 4 359 1554 CUX1,SH2B2
SE_02_001000608 chr7:102150041-102154866 Sample_02_0010 Kidney A-498_emptyvector 608 1 135 12 0 6 0 CUX1,SH2B2
SE_02_026800491 chr7:102150042-102154866 Sample_02_0268 Kidney A-498 491 1 135 12 0 6 0 CUX1,SH2B2
SE_02_041500158 chr7:102150223-102154571 Sample_02_0415 Stomach YCC22 158 1 124 12 0 6 0 CUX1,SH2B2
SE_02_077501909 chr7:102151235-102157860 Sample_02_0775 Pancreas EndoC-BH1_SE 1909 2 200 10 0 2 0 CUX1,SH2B2
SE_02_125500442 chr7:102151239-102156276 Sample_02_1255 Bladder Bladder tumor Luminal2 442 2 148 9 0 2 0 CUX1,SH2B2
SE_02_041800248 chr7:102152170-102164878 Sample_02_0418 Embryo H9_Null+EZH2 248 2 383 24 0 4 69 CUX1,SH2B2,PRKRIP1
SE_02_120500980 chr7:102192795-102237887 Sample_02_1205 Brain NB3 980 34 1337 60 2 272 1114 CUX1,SH2B2
SE_02_103602778 chr7:102218419-102259500 Sample_02_1036 Mammary gland HCC70_XY018 2778 14 1126 56 2 240 1857 CUX1,SH2B2,MIR4285
SE_02_115100263 chr7:102236948-102320306 Sample_02_1151 Mammary gland MCF-7_UNTR 263 22 2331 189 5 346 3744 MIR4285,SH2B2,CUX1,LOC100289561,SPDYE6,POLR2J,ALKBH4,PRKRIP1
SE_02_141300547 chr7:102247910-102265108 Sample_02_1413 Muscle RH4_sgBRG1 547 8 463 39 0 162 1535 CUX1,SH2B2,MIR4285
SE_02_037700107 chr7:102248174-102256400 Sample_02_0377 Skeletal muscle RMS238 107 4 202 11 0 139 1245 CUX1,SH2B2,MIR4285
SE_02_138400467 chr7:102248215-102287466 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 467 14 1165 84 3 226 2871 CUX1,SH2B2,MIR4285
SE_02_107800247 chr7:102250305-102262686 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 247 7 323 22 0 107 1105 CUX1,SH2B2,MIR4285
SE_02_107900366 chr7:102251522-102270368 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 366 6 545 45 1 66 980 CUX1,SH2B2,MIR4285
SE_02_108000912 chr7:102252134-102255301 Sample_02_1080 Muscle JR1 shCtrl 912 1 91 6 0 14 533 CUX1,SH2B2,MIR4285
SE_02_118400168 chr7:102260706-102310994 Sample_02_1184 Brain GBM13 168 18 1501 112 4 157 1907 MIR4285,SH2B2,CUX1,SPDYE6
SE_02_114200228 chr7:102270972-102301222 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 228 8 926 57 2 122 1637 MIR4285,SH2B2,CUX1
SE_02_104801270 chr7:102271466-102289918 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1270 8 594 40 1 77 1339 SH2B2,CUX1,MIR4285
SE_02_021600622 chr7:102272567-102301174 Sample_02_0216 Skin NHEK_scramble 622 4 883 56 2 122 1625 CUX1,SH2B2,MIR4285
SE_02_103501213 chr7:102278163-102287868 Sample_02_1035 Mammary gland HCC70_Vehicle 1213 2 323 16 0 60 899 SH2B2,CUX1,MIR4285
SE_02_104902049 chr7:102279412-102289939 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2049 7 342 20 0 65 876 SH2B2,CUX1,MIR4285
SE_02_124400302 chr7:102280074-102287861 Sample_02_1244 Brain KCNR_ATRA 302 2 263 11 0 56 819 SH2B2,CUX1,MIR4285
SE_02_103601077 chr7:102285793-102287871 Sample_02_1036 Mammary gland HCC70_XY018 1077 1 43 3 0 32 0 SH2B2,MIR4285
SE_02_133600146 chr7:102286161-102287845 Sample_02_1336 Lung NCI-H1299_mutSMARCA4_Dox 146 1 31 1 0 31 0 SH2B2,MIR4285
Genomic distribution of SEs associated with SH2B2
Genome Browser

The strength of the tissue affected by the gene

Expression of SH2B2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)