Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000144040 |
| Gene: | SFXN5 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr2:72942036-73075619 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_120500107 | chr2:72915130-73092819 |
Sample_02_1205 | Brain | NB3 | 107 | 69 | 4539 | 260 | 1 | 791 | 4830 | SFXN5,EMX1,RAB11FIP5,SPR |
| SE_02_098901163 | chr2:72961998-73033116 |
Sample_02_0989 | Kidney | kidney cortex_WT | 1163 | 18 | 1820 | 115 | 0 | 272 | 1235 | SFXN5,EMX1 |
| SE_02_059400170 | chr2:72962682-73072741 |
Sample_02_0594 | iPSC-derived | neural progenitors | 170 | 22 | 2850 | 193 | 0 | 339 | 1701 | SFXN5,EMX1,RAB11FIP5 |
| SE_01_008200286 | chr2:72981416-73045139 |
Sample_01_0082 | Right lobe of liver | right-lobe-of-liver | 286 | 12 | 1654 | 122 | 0 | 179 | 1063 | SFXN5 |
| SE_02_032500245 | chr2:72982085-73045382 |
Sample_02_0325 | Liver | hepatocytes_d1 | 245 | 13 | 1640 | 121 | 0 | 179 | 1063 | SFXN5 |
| SE_02_143300307 | chr2:72982813-73116826 |
Sample_02_1433 | Bone | A673 STAG2 null | 307 | 45 | 3464 | 243 | 0 | 404 | 3058 | SFXN5,RAB11FIP5 |
| SE_02_143200767 | chr2:72982874-73089110 |
Sample_02_1432 | Bone | A673 STAG2 WT | 767 | 26 | 2759 | 194 | 0 | 340 | 2621 | SFXN5,RAB11FIP5 |
| SE_02_047600521 | chr2:72999733-73034570 |
Sample_02_0476 | iPSCs | hiPSC derived hepatocyte-like cells | 521 | 12 | 876 | 55 | 0 | 73 | 370 | SFXN5 |
| SE_02_028500150 | chr2:73019811-73037622 |
Sample_02_0285 | Liver | HuH7_untreat | 150 | 3 | 428 | 27 | 0 | 15 | 224 | SFXN5 |
| SE_02_028600296 | chr2:73019891-73055738 |
Sample_02_0286 | Liver | HuH7_IL-1alpha_1h | 296 | 5 | 896 | 64 | 0 | 33 | 356 | SFXN5 |
| SE_01_003800332 | chr2:73020113-73045162 |
Sample_01_0038 | Liver | HepG2 | 332 | 4 | 636 | 46 | 0 | 21 | 352 | SFXN5,RAB11FIP5 |
| SE_02_032700661 | chr2:73021082-73072609 |
Sample_02_0327 | Liver | hepatocytes_d6 | 661 | 10 | 1341 | 95 | 0 | 80 | 637 | SFXN5,RAB11FIP5 |
| SE_02_118500478 | chr2:73028672-73076337 |
Sample_02_1185 | Brain | GBM14 | 478 | 13 | 1249 | 91 | 0 | 96 | 1102 | SFXN5,RAB11FIP5 |
| SE_02_117400268 | chr2:73028826-73076236 |
Sample_02_1174 | Brain | GBM02 | 268 | 22 | 1244 | 90 | 0 | 96 | 1078 | SFXN5,RAB11FIP5 |
| SE_02_117700208 | chr2:73028858-73076261 |
Sample_02_1177 | Brain | GBM05 | 208 | 13 | 1244 | 90 | 0 | 96 | 1083 | SFXN5,RAB11FIP5 |
| SE_02_096500186 | chr2:73029604-73072168 |
Sample_02_0965 | Brain | H3.3K27M_HSJ031-C3-Rx_cells | 186 | 10 | 1113 | 82 | 0 | 79 | 466 | SFXN5,RAB11FIP5 |
| SE_02_119500309 | chr2:73032514-73076580 |
Sample_02_1195 | Brain | GBM29 | 309 | 21 | 1166 | 88 | 0 | 96 | 1110 | SFXN5,RAB11FIP5 |
| SE_02_119200355 | chr2:73033469-73076296 |
Sample_02_1192 | Brain | GBM26 | 355 | 14 | 1144 | 87 | 0 | 84 | 1091 | SFXN5,RAB11FIP5 |
| SE_02_118300255 | chr2:73034043-73085727 |
Sample_02_1183 | Brain | GBM12 | 255 | 15 | 1367 | 100 | 0 | 152 | 1396 | SFXN5,RAB11FIP5 |
| SE_02_119700505 | chr2:73034063-73076218 |
Sample_02_1197 | Brain | GBM33 | 505 | 14 | 1127 | 85 | 0 | 84 | 1073 | SFXN5,RAB11FIP5 |
| SE_02_119300322 | chr2:73034065-73076262 |
Sample_02_1193 | Brain | GBM27 | 322 | 14 | 1130 | 85 | 0 | 84 | 1083 | SFXN5,RAB11FIP5 |
| SE_02_119400416 | chr2:73034119-73076223 |
Sample_02_1194 | Brain | GBM28 | 416 | 13 | 1124 | 85 | 0 | 84 | 1075 | SFXN5,RAB11FIP5 |
| SE_02_119100390 | chr2:73034164-73076400 |
Sample_02_1191 | Brain | GBM25 | 390 | 18 | 1129 | 86 | 0 | 84 | 1110 | SFXN5,RAB11FIP5 |
| SE_02_118100325 | chr2:73035786-73072232 |
Sample_02_1181 | Brain | GBM10 | 325 | 10 | 980 | 73 | 0 | 67 | 466 | SFXN5,RAB11FIP5 |
| SE_02_118700679 | chr2:73035999-73076213 |
Sample_02_1187 | Brain | GBM16 | 679 | 12 | 1085 | 81 | 0 | 84 | 1073 | SFXN5,RAB11FIP5 |
| SE_02_097700246 | chr2:73036000-73085674 |
Sample_02_0977 | Brain | 2089_H3.3K27WT | 246 | 20 | 1323 | 95 | 0 | 152 | 1396 | SFXN5,RAB11FIP5 |
| SE_02_119600926 | chr2:73036029-73081312 |
Sample_02_1196 | Brain | GBM32 | 926 | 13 | 1219 | 88 | 0 | 140 | 1396 | SFXN5,RAB11FIP5 |
| SE_02_096800222 | chr2:73036260-73076366 |
Sample_02_0968 | Brain | H3.3K27M_pcGBM2p18_cells | 222 | 9 | 1082 | 82 | 0 | 84 | 1105 | SFXN5,RAB11FIP5 |
| SE_02_121100535 | chr2:73036266-73076022 |
Sample_02_1211 | Brain | GBM21 | 535 | 11 | 1073 | 81 | 0 | 82 | 1028 | SFXN5,RAB11FIP5 |
| SE_02_095300234 | chr2:73036295-73076169 |
Sample_02_0953 | Brain | H3.3K27M_1840 | 234 | 15 | 1074 | 81 | 0 | 82 | 1065 | SFXN5,RAB11FIP5 |
| SE_02_097900779 | chr2:73036394-73071290 |
Sample_02_0979 | Brain | JN14-BS1_H3.3K27M | 779 | 11 | 934 | 73 | 0 | 51 | 328 | SFXN5,RAB11FIP5 |
| SE_02_078800183 | chr2:73036443-73072465 |
Sample_02_0788 | Brain | 3565 | 183 | 8 | 969 | 73 | 0 | 67 | 466 | SFXN5,RAB11FIP5 |
| SE_02_097400277 | chr2:73036529-73072361 |
Sample_02_0974 | Brain | H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells | 277 | 7 | 963 | 73 | 0 | 67 | 466 | SFXN5,RAB11FIP5 |
| SE_02_118800422 | chr2:73036601-73076368 |
Sample_02_1188 | Brain | GBM18 | 422 | 11 | 1076 | 82 | 0 | 84 | 1105 | SFXN5,RAB11FIP5 |
| SE_02_119800623 | chr2:73036608-73076183 |
Sample_02_1198 | Brain | GBM34 | 623 | 14 | 1070 | 81 | 0 | 83 | 1071 | SFXN5,RAB11FIP5 |
| SE_02_095600751 | chr2:73036730-73071350 |
Sample_02_0956 | Brain | IDH1_2658 | 751 | 8 | 932 | 72 | 0 | 51 | 328 | SFXN5,RAB11FIP5 |
| SE_02_030100389 | chr2:73037612-73114230 |
Sample_02_0301 | Neuroblastoma | GIMEN | 389 | 10 | 2010 | 141 | 0 | 231 | 2127 | SFXN5,RAB11FIP5 |
| SE_02_085700551 | chr2:73042410-73072416 |
Sample_02_0857 | Glioblastoma | Glioblastoma neurosphere cell_HF-3035 | 551 | 5 | 812 | 57 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_097100572 | chr2:73042460-73072696 |
Sample_02_0971 | Brain | H3.3K27M_XPS124018_xenograft | 572 | 9 | 812 | 56 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_118600612 | chr2:73042561-73072773 |
Sample_02_1186 | Brain | GBM15 | 612 | 10 | 811 | 56 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_097200499 | chr2:73042722-73072146 |
Sample_02_0972 | Brain | H3.3K27M-KO_BT245-D2p8-Rx_R1_cells | 499 | 7 | 794 | 56 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_120000789 | chr2:73042950-73076426 |
Sample_02_1200 | Brain | GBM36 | 789 | 10 | 906 | 65 | 0 | 84 | 978 | SFXN5,RAB11FIP5 |
| SE_02_104300638 | chr2:73042971-73121033 |
Sample_02_1043 | Peripheral blood | Peripheral blood cells_CTCL1200 | 638 | 22 | 2048 | 140 | 0 | 233 | 1995 | SFXN5,RAB11FIP5 |
| SE_02_117500699 | chr2:73043108-73076177 |
Sample_02_1175 | Brain | GBM03 | 699 | 6 | 893 | 63 | 0 | 82 | 936 | SFXN5,RAB11FIP5 |
| SE_02_141001214 | chr2:73043130-73071274 |
Sample_02_1410 | Brain | GSC6 | 1214 | 7 | 753 | 55 | 0 | 51 | 196 | SFXN5,RAB11FIP5 |
| SE_02_097800308 | chr2:73043230-73072305 |
Sample_02_0978 | Brain | 2168_IDH1 | 308 | 6 | 781 | 55 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_132500410 | chr2:73043308-73069974 |
Sample_02_1325 | Hindbrain | Hindbrain derived neural stem cells_NS19_H3.3K27M_WT | 410 | 10 | 715 | 53 | 0 | 47 | 196 | SFXN5,RAB11FIP5 |
| SE_02_086600345 | chr2:73043692-73072196 |
Sample_02_0866 | Malignant rhaboid tumor | TTC1240_SMARCB1_delCC | 345 | 6 | 768 | 54 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_086200372 | chr2:73043947-73072456 |
Sample_02_0862 | Malignant rhaboid tumor | TTC1240_SMARCB1 FL | 372 | 6 | 764 | 53 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_079900236 | chr2:73044223-73072135 |
Sample_02_0799 | Brain | MESMN1 | 236 | 6 | 746 | 53 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_096700504 | chr2:73044300-73076431 |
Sample_02_0967 | Brain | H3.3K27M_JN57 | 504 | 9 | 861 | 62 | 0 | 84 | 978 | SFXN5,RAB11FIP5 |
| SE_02_086500317 | chr2:73044310-73072436 |
Sample_02_0865 | Malignant rhaboid tumor | TTC1240_SMARCB1_R377H | 317 | 9 | 750 | 53 | 0 | 67 | 334 | SFXN5,RAB11FIP5 |
| SE_02_086400369 | chr2:73052881-73072146 |
Sample_02_0864 | Malignant rhaboid tumor | TTC1240_SMARCB1_K364del | 369 | 5 | 548 | 37 | 0 | 60 | 334 | SFXN5,RAB11FIP5 |
| SE_02_138800870 | chr2:73061796-73072427 |
Sample_02_1388 | Peripheral blood | JB6_ALK+ | 870 | 3 | 287 | 19 | 0 | 32 | 138 | SFXN5,RAB11FIP5 |
| SE_02_143701033 | chr2:73061829-73114576 |
Sample_02_1437 | Liver | LSEC-TNF | 1033 | 13 | 1361 | 90 | 0 | 196 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_095100081 | chr2:73061968-73115208 |
Sample_02_0951 | HMSCs | hMSCs | 81 | 22 | 1374 | 91 | 0 | 196 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_016500522 | chr2:73062014-73072356 |
Sample_02_0165 | Lung | H2087_LCC2 | 522 | 2 | 279 | 19 | 0 | 32 | 138 | SFXN5,RAB11FIP5 |
| SE_02_061001580 | chr2:73062110-73072215 |
Sample_02_0610 | Liposarcoma | MLS 1765-92 | 1580 | 2 | 272 | 19 | 0 | 32 | 138 | SFXN5,RAB11FIP5 |
| SE_02_142800496 | chr2:73062166-73114498 |
Sample_02_1428 | Shoulder | fibroblast_316 | 496 | 10 | 1348 | 90 | 0 | 196 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_158400642 | chr2:73062190-73076268 |
Sample_02_1584 | Brain | U87 GBM_Mock | 642 | 3 | 383 | 27 | 0 | 49 | 755 | SFXN5,RAB11FIP5 |
| SE_02_088600229 | chr2:73062530-73118266 |
Sample_02_0886 | Skin | foreskin_ p63KLF4 | 229 | 14 | 1435 | 95 | 0 | 197 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_157900481 | chr2:73062572-73112950 |
Sample_02_1579 | Renal | 786-M1A | 481 | 14 | 1304 | 88 | 0 | 195 | 1710 | SFXN5,RAB11FIP5 |
| SE_02_045200284 | chr2:73062915-73112661 |
Sample_02_0452 | Skin | hTERT immortalised human skin fibroblasts_Non-tumourigenic | 284 | 15 | 1293 | 86 | 0 | 190 | 1627 | SFXN5,RAB11FIP5 |
| SE_02_076300562 | chr2:73063125-73114281 |
Sample_02_0763 | Podocyte | podocyte_DEX | 562 | 10 | 1312 | 87 | 0 | 195 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_046601012 | chr2:73063218-73112977 |
Sample_02_0466 | Adipose | visceral adipocytes | 1012 | 17 | 1288 | 85 | 0 | 195 | 1719 | SFXN5,RAB11FIP5 |
| SE_02_076200904 | chr2:73063346-73118244 |
Sample_02_0762 | Podocyte | podocyte_CTL | 904 | 15 | 1412 | 91 | 0 | 196 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_158000229 | chr2:73063485-73113738 |
Sample_02_1580 | Renal | 786-O | 229 | 18 | 1300 | 85 | 0 | 194 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_098900429 | chr2:73063534-73112937 |
Sample_02_0989 | Kidney | kidney cortex_WT | 429 | 18 | 1282 | 84 | 0 | 194 | 1703 | SFXN5,RAB11FIP5 |
| SE_02_077001363 | chr2:73063571-73112847 |
Sample_02_0770 | Ovary | OVCA429_shLuc | 1363 | 16 | 1278 | 83 | 0 | 194 | 1681 | SFXN5,RAB11FIP5 |
| SE_02_039600230 | chr2:73063835-73113843 |
Sample_02_0396 | Skin | NHEK-D | 230 | 10 | 1290 | 85 | 0 | 194 | 1799 | SFXN5,RAB11FIP5 |
| SE_02_114500609 | chr2:73063994-73093826 |
Sample_02_1145 | Peripheral nerve | SNF02.2_PRC2 WT | 609 | 11 | 771 | 51 | 0 | 136 | 1516 | SFXN5,RAB11FIP5 |
Genomic distribution of SEs associated with SFXN5