Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000203706 |
| Gene: | SERTAD4-AS1 | Gene type: | lncRNA |
| Strand: | - | External links: |
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| Genomic region: | chr1:210231456-210234047 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_076201760 | chr1:210221790-210272681 |
Sample_02_0762 | Podocyte | podocyte_CTL | 1760 | 9 | 1378 | 72 | 0 | 316 | 769 | SERTAD4,SERTAD4-AS1 |
| SE_02_156000203 | chr1:210221827-210266779 |
Sample_02_1560 | Gastrointestinal Stromal | GIST-9_PDGFRA e18 | 203 | 9 | 1203 | 65 | 0 | 314 | 769 | SERTAD4,SERTAD4-AS1 |
| SE_02_125300486 | chr1:210222226-210311811 |
Sample_02_1253 | Mammary gland | CAMA1 ER+/FGFR1-amplified | 486 | 19 | 2455 | 188 | 8 | 428 | 769 | SERTAD4,SERTAD4-AS1,HHAT |
| SE_02_063400016 | chr1:210222247-210312204 |
Sample_02_0634 | Gastrointestinal Stromal | GIST-48B_JQ1 | 16 | 21 | 2466 | 189 | 8 | 428 | 769 | SERTAD4,SERTAD4-AS1,HHAT |
| SE_02_055300092 | chr1:210222388-210273424 |
Sample_02_0553 | Other | HSSY2 shCt | 92 | 23 | 1378 | 73 | 0 | 316 | 769 | SERTAD4,SERTAD4-AS1 |
| SE_02_155400100 | chr1:210222441-210275861 |
Sample_02_1554 | Gastrointestinal Stromal | GIST-3_KIT e11 | 100 | 14 | 1437 | 76 | 0 | 316 | 769 | SERTAD4,SERTAD4-AS1 |
| SE_02_154700019 | chr1:210222458-210311039 |
Sample_02_1547 | Gastrointestinal Stromal | GIST-48B | 19 | 30 | 2436 | 185 | 7 | 427 | 769 | SERTAD4,SERTAD4-AS1,HHAT |
| SE_02_063200008 | chr1:210222487-210311832 |
Sample_02_0632 | Gastrointestinal Stromal | GIST-48B_DMSO | 8 | 16 | 2448 | 188 | 8 | 428 | 769 | SERTAD4,SERTAD4-AS1,HHAT |
| SE_02_154300013 | chr1:210222493-210276100 |
Sample_02_1543 | Gastrointestinal Stromal | GIST-48 | 13 | 16 | 1440 | 76 | 0 | 316 | 769 | SERTAD4,SERTAD4-AS1 |
| SE_02_063300007 | chr1:210222663-210311908 |
Sample_02_0633 | Gastrointestinal Stromal | GIST-48B_Imatinib | 7 | 17 | 2444 | 188 | 8 | 418 | 769 | SERTAD4,SERTAD4-AS1,HHAT |
| SE_02_155900089 | chr1:210231484-210273143 |
Sample_02_1559 | Gastrointestinal Stromal | GIST-8_PDGFRA e18 | 89 | 13 | 1093 | 53 | 0 | 271 | 748 | SERTAD4,SERTAD4-AS1 |
| SE_02_083900112 | chr1:210231609-210273007 |
Sample_02_0839 | Embryo | hNPCs_K755R/+ | 112 | 14 | 1088 | 53 | 0 | 262 | 744 | SERTAD4,SERTAD4-AS1,C1ORF133,HHAT |
| SE_02_113600146 | chr1:210231632-210267198 |
Sample_02_1136 | Bone | U2OS-anaphase/telophase | 146 | 9 | 908 | 45 | 0 | 252 | 744 | SERTAD4,SERTAD4-AS1 |
| SE_02_153800571 | chr1:210231745-210266605 |
Sample_02_1538 | Mammary gland | MDA-MB-231 | 571 | 7 | 890 | 44 | 0 | 251 | 728 | SERTAD4,SERTAD4-AS1 |
| SE_02_063500057 | chr1:210231983-210253477 |
Sample_02_0635 | Synovial sarcoma | HSSYII_Untreated | 57 | 3 | 495 | 29 | 0 | 187 | 708 | SERTAD4,SERTAD4-AS1 |
| SE_02_116200647 | chr1:210235973-210275651 |
Sample_02_1162 | Stomach | YCC11 | 647 | 15 | 1053 | 48 | 0 | 202 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_141500346 | chr1:210235983-210265441 |
Sample_02_1415 | Brain | DIPGIV | 346 | 9 | 749 | 34 | 0 | 200 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_124100451 | chr1:210236144-210266239 |
Sample_02_1241 | Skin | MCC26_virus_negative | 451 | 10 | 774 | 36 | 0 | 199 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_155800153 | chr1:210236146-210266388 |
Sample_02_1558 | Gastrointestinal Stromal | GIST-7_PDGFRA e18 | 153 | 8 | 780 | 36 | 0 | 199 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_086701244 | chr1:210236222-210272645 |
Sample_02_0867 | Bone marrow | Bone marrow derived hMSC_d0 | 1244 | 13 | 973 | 44 | 0 | 201 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_044200711 | chr1:210236292-210274370 |
Sample_02_0442 | Bone | MG63.3 | 711 | 19 | 1012 | 45 | 0 | 201 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_055700645 | chr1:210236373-210273173 |
Sample_02_0557 | iPSCs | WT hiPSC#1 | 645 | 6 | 985 | 45 | 0 | 201 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_055600414 | chr1:210236382-210273330 |
Sample_02_0556 | iPSCs | BOFS hiPSC cl1 | 414 | 10 | 989 | 45 | 0 | 201 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_155300789 | chr1:210236437-210266469 |
Sample_02_1553 | Gastrointestinal Stromal | GIST-2_KIT e11 | 789 | 11 | 779 | 36 | 0 | 199 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_062900635 | chr1:210236540-210263823 |
Sample_02_0629 | Gastrointestinal Stromal | GIST-T1_DMSO | 635 | 7 | 684 | 33 | 0 | 197 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_055200026 | chr1:210236614-210310922 |
Sample_02_0552 | Other | SYO1 shCt | 26 | 24 | 2041 | 157 | 7 | 312 | 354 | SERTAD4,HHAT,SERTAD4-AS1 |
| SE_02_084000511 | chr1:210236639-210273094 |
Sample_02_0840 | Embryo | hNPCs_R1159Q/+ | 511 | 10 | 977 | 45 | 0 | 201 | 354 | SERTAD4,SERTAD4-AS1,C1ORF133,HHAT |
| SE_02_105800152 | chr1:210236749-210312020 |
Sample_02_1058 | Bone | A673_SA2 Rescue | 152 | 26 | 2059 | 161 | 8 | 309 | 354 | SERTAD4,HHAT,SERTAD4-AS1 |
| SE_02_156500147 | chr1:210236794-210266399 |
Sample_02_1565 | Gastrointestinal Stromal | Gastrointestinal stromal tumor | 147 | 14 | 767 | 36 | 0 | 195 | 354 | SERTAD4,SERTAD4-AS1 |
| SE_02_066300481 | chr1:210244899-210259457 |
Sample_02_0663 | Thyroid | TT | 481 | 6 | 383 | 22 | 0 | 68 | 0 | SERTAD4,SERTAD4-AS1 |
| SE_02_094300117 | chr1:210244983-210273185 |
Sample_02_0943 | Brain | LNZ308 | 117 | 9 | 802 | 39 | 0 | 110 | 0 | SERTAD4,SERTAD4-AS1 |
| SE_02_143200735 | chr1:210250294-210296633 |
Sample_02_1432 | Bone | A673 STAG2 WT | 735 | 9 | 1329 | 126 | 6 | 154 | 0 | HHAT,SERTAD4-AS1,SERTAD4 |
Genomic distribution of SEs associated with SERTAD4-AS1